BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02468.1
Length=1876
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477481 jgi|Araly1|477481|fgenesh2_kg.3__182__AT3G02468.1 2817 0.0
Ahg488445 jgi|Araly1|488445|fgenesh2_kg.6__1579__AT5G15948.1 804 0.0
> Ahg477481 jgi|Araly1|477481|fgenesh2_kg.3__182__AT3G02468.1
Length=1691
Score = 2817 bits (1525), Expect = 0.0
Identities = 1652/1710 (97%), Gaps = 22/1710 (1%)
Strand=Plus/Plus
Query 1 ACGAACGCATCTCATTGCTTCATCATTACCAAATCATCAACT-TAATCGTTTCTCTCAAA 59
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1 ACGAACGCATCTCATTGCTTCATCATTACCAAATCATCATTTATAATCGTTTCTCTCAAA 60
Query 60 TTTAGGGTTTTCTCTTTTCTCGAAAGTCTTGCGGTTTTCTGAA-TCATCTCTATCTGGTT 118
||||||| | | ||||||| ||||||||| |||||| |||||||||
Sbjct 61 TTTAGGG----------T-T------TCTTGCGTTTTTCTGAATTCATCTTTATCTGGTT 103
Query 119 TGAGGGTTTCGTTTGATATCTGGAGAAAGGGGTTTCTGGAAACAAGGAGTTCATAATTCG 178
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 104 TGAGGGTTTCGTTTGATATCTGGAAAAAGGGGTTTCTGGAAACAAGGAGTTCATAGTTCG 163
Query 179 CGATCTTGATCTATCGATCTTCATTTATATATAAAAGCGTGAATGAGATTATGATGGAGT 238
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 164 CGATCTAGATCTATCGATCTTCATTTATATGTAAAAGCGTGAATGAGATTATGATGGAGT 223
Query 239 CGAAAGGTGGTAAAAAGAAGTCCAGCAGTAGTAGTTCCTTATTTTACGAAGCTCCCCTCG 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 224 CGAAAGGTGGTAAAAAGAAGTCCAGCAGTAGTAGTTCCTTATTTTACGAAGCTCCCCTCG 283
Query 299 GTTACAGCATTGAAGACGTTCGTCCAAACGGTGGAATCAAGAAATTCAAATCTTCTGTCT 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 GTTACAGCATTGAAGACGTTCGTCCAAACGGTGGAATCAAGAAATTCAAATCTTCTGTCT 343
Query 359 ACTCAAACTGCTCCAAGAGGCCATCCTGAGTACCAGCGTGCACCGATCTTCATAATATAG 418
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 344 ACTCTAACTGCTCCAAGAGGCCATCCTGAGTACCAGCGTGCACCGATCTTCTTAATATAG 403
Query 419 TTATAGCTTTCTTTACTTTCCAGTTTATAATTTTCTTCTTTCAAAGCTCCTTTTCTGCTG 478
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 404 TTATAGCTTTCTTTACTTTCCAGTTTATAATTTTCTTCTTTCAAAGCTCCCTTTCTGCTG 463
Query 479 GTTCCCGGATCCAATCGTTCTCTCCTCCTACTACAAGTCCTGTCGCTCACACAACAAGGC 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 GTTCCCGGATCCAATCGTTCTCTCCTCCTACTACAAGTCCTGTCGCTCACACAACAAGGC 523
Query 539 GAGATGGCCTTATCTGCAATCGGTTTCGAAGGTTACGAGAAACGGCTCGAGGTGACTTTC 598
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 524 GAGATGGCCTTATCTGCAATCGGTTTCGAAGGTTACGAGAAACGGCTCGAGGTTACTTTC 583
Query 599 TTTGAGCCAAGCATCTTTCAAGACTCCAAGGGACTGGGACTCCGTGCTCTGACCAAGTCC 658
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 584 TTTGAGCCAAGCATCTTTCAAGACTCCAAGGGACTGGGACTCCGTGCTCTTACCAAGTCC 643
Query 659 CAGCTTGATGAAATTCTTACACCTGCTGCATGCACGATCGTTTCATCTCTCTCCAACGAT 718
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 644 CAGCTTGATGAAATTCTTACACCTGCTGCATGCACGATCGTTTCTTCTCTCTCCAACGAT 703
Query 719 CAATTGGACTCTTACGTACTCTCTGAGTCCAGCTTCTTTGTCTACCCCTACAAAGTCATC 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 CAATTGGACTCTTACGTACTCTCTGAGTCCAGCTTCTTTGTCTACCCCTACAAAGTCATC 763
Query 779 ATCAAGACTTGCGGTACCACTAAGCTCCTCCTCTCTATCCCACCACTTCTAAAGCTGGCT 838
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 764 ATCAAGACTTGCGGTACCACGAAGCTCCTCCTCTCTATCCCACCACTTCTAAAGCTGGCT 823
Query 839 GGTGAGCTCTCTCTGAGTGTCAAGTCTGTGAAGTACACTCGCGGCTCCTTCCTCTGCCCC 898
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 824 GGTGAGCTCTCTTTGAGTGTCAAGTCTGTGAAGTACACTCGTGGCTCCTTCCTCTGCCCC 883
Query 899 GGAGGCCAGCCTTTTCCTCACCGCAGCTTCTCTGAAGAAGTCTCTGTTCTTGATGGGCAC 958
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 GGAGGCCAGCCTTTCCCTCACCGCAGCTTCTCTGAAGAAGTCTCTGTTCTTGATGGGCAC 943
Query 959 TTTACTCAGCTGGGCTTGAACAGCGTAGCCTACTTGATGGGCAATGATGATGAGACTAAG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 TTTACTCAGCTGGGCTTGAACAGCGTAGCCTACTTGATGGGCAATGATGATGAGACTAAG 1003
Query 1019 AAATGGCATGTCTATGCTGCCTCTGCCCAGGACTCCAGCAACTGCAACAACAATGTCTAC 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 AAATGGCATGTCTATGCTGCCTCTGCCCAGGACTCCAGCAACTGCAACAACAATGTCTAC 1063
Query 1079 ACTCTCGAGATGTGCATGACTGGTCTGGACAGAGAGAAAGCTGCTGTCTTCTACAAGGAT 1138
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1064 ACTCTCGAGATGTGCATGACTGGTCTGGACAGAGAGAAAGCTTCTGTCTTCTACAAGAAC 1123
Query 1139 GAAGCTGACAAGACTGGGTCAATGACTGATAACTCTGGAATCAGAAAGATCCTTCCCAAG 1198
||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||| ||
Sbjct 1124 GAAGCTGACAAAACTGGGTCAATGACTGACAACTCTGGAATCCGAAAGATCCTTCCCCAG 1183
Query 1199 TCTGAGATCTGCGACTTTGAATTCGAGCCCTGCGGCTACTCTATGAACTCAATTGAAGGG 1258
|| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1184 TCCCAGATCTGCGACTTTGAATTCGAGCCCTGTGGCTACTCTATGAACTCAATTGAAGGG 1243
Query 1259 GATGCAATCTCCACGATCCATGTGACCCCTGAAGATGGGTTTAGCTACGCTAGCTTCGAA 1318
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1244 GATGCAATCTCCACGATCCATGTGACCCCTGAAGATGGGTTTAGCTACGCTAGCTTTGAA 1303
Query 1319 GCTGTGGGTTACGACTTCAACACCCTTGACCTTAGCCAGCTGGTGACAAGGGTTCTCTCT 1378
||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||
Sbjct 1304 GCTGTGGGTTACGACTTCAACACTATTGACCTGAGCCAGCTGGTGACAAGGGTACTCTCT 1363
Query 1379 TGCTTCGAGCCCAAGCAATTCTCTGTAGCTGTGCACTCGAGCGTTGGAGCGAACTCATAC 1438
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1364 TGCTTCGAGCCCAAGCAATTCTCTGTAGCTGTGCACTCGAGCGTTGGAGCGAACGCGTAC 1423
Query 1439 AAGCCAGAGATTACTGTAGACTTGGAAGACTATGGGTGCAGAGAGAGGACATTTGAGTCT 1498
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1424 AAGCCAGAGATCACTGTAGACTTGGAAGACTATGGGTGCAGAGAGAGGACATTTGAGTCT 1483
Query 1499 CTAGGAGAAGAGAGTGGAACAGTGATGTATCAGACGTTTGAGAAGCTTGGTAAGTACTGT 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1484 CTAGGAGAAGAGAGTGGAACAGTGATGTATCAGACGTTTGAGAAGCTTGGTAAGTACTGT 1543
Query 1559 GGATCGCCTAGATCTACCTTGAAGTGTGAATGGAGCAGCAACAATAGCTGCAGCAGCGAG 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1544 GGATCGCCTAGATCTACCTTGAAGTGTGAATGGAGCAGCAACAATAGCTGCAGCAGCGAG 1603
Query 1619 GACGAGAAGGACGAGGGAATCTAGCAGAAtttttcttcctaataactattttcgagcttt 1678
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1604 GACGAGAAGGACGAGGGAATCTAGCAGAATTTT-CTTCCTAATAACTATTTTCGAGCTTT 1662
Query 1679 ctgtttttg-ttctttctttttAAAAAACT 1707
||||||||| || |||||||||||||||||
Sbjct 1663 CTGTTTTTGCTT-TTTCTTTTTAAAAAACT 1691
> Ahg488445 jgi|Araly1|488445|fgenesh2_kg.6__1579__AT5G15948.1
Length=1645
Score = 804 bits (435), Expect = 0.0
Identities = 908/1130 (80%), Gaps = 58/1130 (5%)
Strand=Plus/Plus
Query 541 GATGGCCTTATCTGCAATCGGTTTCGAAGGTTACGAGAAACGGCTCGAGGTGACTTTCTT 600
|||| || | ||||| || || |||||||| |||||||| || || || || ||||||||
Sbjct 426 GATGACCATGTCTGCTATTGGCTTCGAAGGCTACGAGAAGCGTCTTGAAGTTACTTTCTT 485
Query 601 TGAGCCAAG-CATCTTTCAAGACTC-CAAGGGACTGGGACTCCGTG-CTCTGACCAAGTC 657
|||||| | | |||||| ||| | ||||| | || || |||| || ||||||| ||
Sbjct 486 TGAGCCTGGTC-TCTTTCTTGACACTCAAGGTA-AAGGTCTACGTGCCT-TGACCAAATC 542
Query 658 CCAGCTTGATGAAATTCTTAC-ACCTGCTGCA-TGCACGATCGTTTCATCTCTCTCCAAC 715
||| | ||||| |||||| | ||| |||| | ||||| ||||||||||||||||| |||
Sbjct 543 TCAGATCGATGAGATTCTT-CAACCAGCTG-AGTGCACTATCGTTTCATCTCTCTCGAAC 600
Query 716 GATCAATTGGACTCTTACGTACTCTCTGAGTCCAGCT-TCTTTGTCTACCCCTACAAAG- 773
||||| | |||||||| || |||||||||||||| | ||||| ||| ||| ||| |||
Sbjct 601 GATCAGCTCGACTCTTATGTTCTCTCTGAGTCCAG-TCTCTTTATCTTCCCTTAC-AAGA 658
Query 774 TCATCATCAAGACTTGCGGTACCACTAAGCTCCTCCTCTCTATCCCA-CCACTTC-TAAA 831
| ||||||| |||||||| || |||||||||||||||||||| | |||| || | |
Sbjct 659 TTGTCATCAAAACTTGCGGGACTACTAAGCTCCTCCTCTCTAT-TGAGCCAC-TCTTGAG 716
Query 832 GCTGGCTGGTGAGCTCTCTC-TGAGTGTCAAGTCTGTGAAGTACACTCGCGGCTCCTTCC 890
| | ||| ||||||| |||| ||| |||||| |||||| ||||||||| || |||||
Sbjct 717 GTTAGCTAGTGAGCTTTCTCTTGA-CGTCAAGGCTGTGAGGTACACTCGTGGAAGCTTCC 775
Query 891 TCTGCCCCGGAGGCCAGCCTTTTCCTCACCGCAGCTTCTCTGAAGAAGTCTCTGTTCTTG 950
|||| || ||||| || || || |||||||||| ||||||||||||||||||||| ||||
Sbjct 776 TCTGTCCTGGAGGACAACCATTCCCTCACCGCAACTTCTCTGAAGAAGTCTCTGTGCTTG 835
Query 951 ATGGGCACTTTACTCAGCTGGGCTTGAACAGCGTAGCCTACTTGATGGGCAATGATGATG 1010
|||| |||||| || || |||| |||| ||| || || ||||||||||||||||| ||||
Sbjct 836 ATGGTCACTTTGCTAAGTTGGGTTTGAGCAGTGTTGCGTACTTGATGGGCAATGACGATG 895
Query 1011 AGACTAAGAAATGGCATGTCTA-TGCTGCCTCTGCCCAGGACT-CCAGCAACTGCAACAA 1068
| || |||||||||||||| || | |||| ||| | || | || |||| ||||||
Sbjct 896 AAACCAAGAAATGGCATGTTTACT-CTGCTTCT--TC-TGA-TAACAACAACAACAACAA 950
Query 1069 CAATGTCTACACTCTCGAGATGTGCATGACTGGTCTGGACAGAGAGAAAGC-TGCTGTCT 1127
|||||||||||||||||||||||| |||||||||||||||| ||| || || | ||||||
Sbjct 951 CAATGTCTACACTCTCGAGATGTGTATGACTGGTCTGGACAAAGACAAGGCAT-CTGTCT 1009
Query 1128 TCTACAAG---GA-TGAAGCTGACAAGACTGGGTCAATGACTGATAACTCTGGAATCAGA 1183
||| |||| || | ||||| || | |||| || ||||||||||||||||| ||||||
Sbjct 1010 TCTTCAAGAACGAGTCAAGCT--CA-G-CTGGTTCTATGACTGATAACTCTGGCATCAGA 1065
Query 1184 AAGATCCTTCC-CAAGTCTGAGATCTGCGACTTTGAATTCGAGCCCTGCGGCTACTCTAT 1242
||||| ||||| ||| || | ||||| |||||||| || ||||| || |||||||| ||
Sbjct 1066 AAGATACTTCCTCAA-TCCCAAATCTGTGACTTTGAGTTTGAGCCATGTGGCTACTCAAT 1124
Query 1243 GAACT-CAATTGAAGGGGATGCAATCTCCACGATCCATGTGACCCCTGAAGATGGGTTT- 1300
|||| || | ||||| || ||||||||||| ||||||||||| || |||||||| |||
Sbjct 1125 GAACAGCA-TCGAAGGTGACGCAATCTCCACCATCCATGTGACTCCAGAAGATGG-TTTC 1182
Query 1301 AGCTACGCTAGCTTCGAAGCTGTGGGTTACGACTTCAACACCCTTG-ACCTT-AGCCAGC 1358
|||||||||||||| || || ||||| ||||| |||| || || || || || ||||| |
Sbjct 1183 AGCTACGCTAGCTTTGATGCAGTGGGATACGATTTCA-CAACCATGGAC-TTGAGCCATC 1240
Query 1359 TGGTGACAAGGGTTCTCTCTTGCTTCGAGCCCAAGCAATTCTCTGTAGCTGTGCACTCGA 1418
|||| ||| ||| || ||||||||||||| |||||||||||||||||||| ||||| |
Sbjct 1241 TGGTCTCAAAGGTACTAACTTGCTTCGAGCCAAAGCAATTCTCTGTAGCTGTCCACTCTA 1300
Query 1419 GCGTTGGAGCGAACTCA-TA-CAAGCCAGAGAT-TAC-TGTAGACTTGGAAGACTATGGG 1474
|||| | | | || | || || | | | | || ||| ||| | || || || |
Sbjct 1301 GCGTCGCA-CAAAATGGGTATCACTCT-G-G-TCTATGTGTTGACCTAGACGATTACGAA 1356
Query 1475 TGCAGAGAGAGGACATTTGAGTCTCTAGGAGAAGAGAGTGGAACAGTGATGTATCAGACG 1534
|||||||||| ||| | |||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1357 TGCAGAGAGACAACAATGGAGTCTCTAGGAGAAGAGAGAGGAACAGTGATGTATCAGAGG 1416
Query 1535 TTTGAGAAGCTTGGTAAGTACTGTGGATCGCCTAGATCTACCTTGAAGTGTGAATGGAGC 1594
|||||||||||||| ||||| ||||| || || ||||||||||||| ||||| ||||||
Sbjct 1417 TTTGAGAAGCTTGGAAAGTATTGTGGTTCTCCGCGATCTACCTTGAAATGTGAGTGGAGC 1476
Query 1595 AGCAACAATAGCTGCAGCAGCGAGGACGAGAAGGACGA---GGGAATCTA 1641
||||||| |||||||| |||||||||||||||||| || |||||||||
Sbjct 1477 AGCAACAGTAGCTGCAACAGCGAGGACGAGAAGGAGGAATAGGGAATCTA 1526
Score = 259 bits (140), Expect = 5e-68
Identities = 184/205 (90%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 191 ATCGATCTTCATTTATATATAAAAGCGTGAATGAGATTATGATGGAGTCGAAAGGTGGTA 250
||| || ||| |||| ||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct 163 ATCAATATTCCTTTACATA-AAAAGCGTGAATGAGATTATGATGGAATCGAAAGGTGGCA 221
Query 251 AAAAGAAGTCCAGCAGTAGTAGTTCCTTATTTTACGAAGCTCCCCTCGGTTACAGCATTG 310
| |||||||| |||| | |||||||||||||||||||| ||||| |||||||||||||
Sbjct 222 ATAAGAAGTCAAGCA-CA--AGTTCCTTATTTTACGAAGCACCCCTTGGTTACAGCATTG 278
Query 311 AAGACGTTCGTCCAAACGGTGGAATCAAGAAATTCAAATCTTCTGTCTACTCAAACTGCT 370
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 279 AAGACGTTCGTCCTTACGGTGGAATCAAGAAATTCAAATCTTCTGTCTACTCTAACTGCG 338
Query 371 CCAAGAGGCCATCCTGAGTACCAGC 395
| |||||||| ||||||||||||||
Sbjct 339 CTAAGAGGCCTTCCTGAGTACCAGC 363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70466953250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5