BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02480.1
Length=449
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477484 jgi|Araly1|477484|fgenesh2_kg.3__185__AT3G02480.1 459 1e-128
> Ahg477484 jgi|Araly1|477484|fgenesh2_kg.3__185__AT3G02480.1
Length=340
Score = 459 bits (248), Expect = 1e-128
Identities = 283/300 (94%), Gaps = 1/300 (0%)
Strand=Plus/Plus
Query 64 CGAGAGAAAATGGACAACAAGCAAAACGCGAGCTACCAAGCCGGTCAAGCCACTGGCCAG 123
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 CGAGAGAAAATGGATAACAAGCAAAACATGAGCTACCAAGCCGGTCAAGCCACTGGCCAG 60
Query 124 ACTAAGGAGAAGGCCGGTGGAATGATGGACAAGGCCAAGGATGCTGCTGCTTCAGCTCAA 183
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACTAAGGAGAAGGCAGGTGGAATGATGGACAAGGCCAAGGATGCTGCTGCTTCAGCTCAG 120
Query 184 GACTCCTTGCAACAGACTGGACAACAAATGAAGGAGAAGGCGCAAGGAGCTGCTGATGTC 243
||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||
Sbjct 121 GACTCCTTGCAACAGACGGGACAACAAATGACGGAGAAGGTACAAGGAGCTGCTGATGTC 180
Query 244 GTCAAGGACAAGACCGGCATGAACAAAAGCCACTAAGCAAGCACCTTGGACTTCTTTTCT 303
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 181 GTCAAGGACAAGACCGGCATGAACAAAAACCACTAAGCAAGCACCTTGGACTTCTTTTCT 240
Query 304 AATTAATTCCCCTCTTCGACTTGTGTTT-AATAAATTTGGGGTTTTAATTCTCATTCCTG 362
||||||| |||||||||||| ||| ||| |||||| | |||||||||||||||||| |||
Sbjct 241 AATTAATGCCCCTCTTCGACATGTCTTTTAATAAACTGGGGGTTTTAATTCTCATTTCTG 300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16216125325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5