BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G02480.1 Length=449 Score E Sequences producing significant alignments: (Bits) Value Ahg477484 jgi|Araly1|477484|fgenesh2_kg.3__185__AT3G02480.1 459 1e-128 > Ahg477484 jgi|Araly1|477484|fgenesh2_kg.3__185__AT3G02480.1 Length=340 Score = 459 bits (248), Expect = 1e-128 Identities = 283/300 (94%), Gaps = 1/300 (0%) Strand=Plus/Plus Query 64 CGAGAGAAAATGGACAACAAGCAAAACGCGAGCTACCAAGCCGGTCAAGCCACTGGCCAG 123 |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1 CGAGAGAAAATGGATAACAAGCAAAACATGAGCTACCAAGCCGGTCAAGCCACTGGCCAG 60 Query 124 ACTAAGGAGAAGGCCGGTGGAATGATGGACAAGGCCAAGGATGCTGCTGCTTCAGCTCAA 183 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ACTAAGGAGAAGGCAGGTGGAATGATGGACAAGGCCAAGGATGCTGCTGCTTCAGCTCAG 120 Query 184 GACTCCTTGCAACAGACTGGACAACAAATGAAGGAGAAGGCGCAAGGAGCTGCTGATGTC 243 ||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||| Sbjct 121 GACTCCTTGCAACAGACGGGACAACAAATGACGGAGAAGGTACAAGGAGCTGCTGATGTC 180 Query 244 GTCAAGGACAAGACCGGCATGAACAAAAGCCACTAAGCAAGCACCTTGGACTTCTTTTCT 303 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 181 GTCAAGGACAAGACCGGCATGAACAAAAACCACTAAGCAAGCACCTTGGACTTCTTTTCT 240 Query 304 AATTAATTCCCCTCTTCGACTTGTGTTT-AATAAATTTGGGGTTTTAATTCTCATTCCTG 362 ||||||| |||||||||||| ||| ||| |||||| | |||||||||||||||||| ||| Sbjct 241 AATTAATGCCCCTCTTCGACATGTCTTTTAATAAACTGGGGGTTTTAATTCTCATTTCTG 300 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16216125325 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5