BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02490.1
Length=2401
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927732 jgi|Araly1|927732|scaffold_300189.1 3064 0.0
Ahg488448 jgi|Araly1|488448|fgenesh2_kg.6__1582__AT5G15980.1 1430 0.0
Ahg908198 jgi|Araly1|908198|Al_scaffold_0002_1279 438 7e-122
Ahg891288 jgi|Araly1|891288|Al_scaffold_0007_3274 388 8e-107
> Ahg927732 jgi|Araly1|927732|scaffold_300189.1
Length=2044
Score = 3064 bits (1659), Expect = 0.0
Identities = 1918/2041 (94%), Gaps = 26/2041 (1%)
Strand=Plus/Plus
Query 65 CTTAGATAGACATTAAGGATGAGGTATCAATGG-CGA--TCGCTTCTTTTCCGGAGCTAC 121
||||||| || | ||||||||||||||||||| || | ||| ||||| ||||| ||
Sbjct 3 CTTAGATTGAAAGAAAGGATGAGGTATCAATGGAGGAGGTTGCTACTTTTTCGGAGTTAT 62
Query 122 CGTTCGTCTCCTCGTCCATTTCTTTCTCATCACTCGCGGTTCCAGGTAATCTCCAATTCG 181
||||| ||| || |||||||||||||||||||| | || ||||||||||||||||||
Sbjct 63 CGTTCCTCTAGTCAACCATTTCTTTCTCATCACTCCCAGTCCCAGGTAATCTCCAATTCA 122
Query 182 ACTCGATCTTTCTCTTCTTTCCTCCACGAACG--TT----TTGGAG---TGCAACAAAGA 232
|||||||||||||||||||||||||| | ||| || |||||| |||||||||||
Sbjct 123 ACTCGATCTTTCTCTTCTTTCCTCCATGGACGTATTGGAGTTGGAGCTTTGCAACAAAGA 182
Query 233 CAGTGTCTTTTTGCCTTGCGATCGCCATTGGCGAGCTCTGTTAGCCGACGCTTTTCATCT 292
||||| ||| |||||||||||||||| ||| ||||||||||||||||| |||||||||||
Sbjct 183 CAGTGCCTTCTTGCCTTGCGATCGCCGTTGACGAGCTCTGTTAGCCGAAGCTTTTCATCT 242
Query 293 GAGTCTGCGATAGAAGAGAAA-CTTCCTGCTGAGACTGTTGTGATTGATGTTTTTAGCAG 351
||| ||||||| ||||||||| ||| |||||||||| |||||||||||||||||||||||
Sbjct 243 GAGCCTGCGATTGAAGAGAAACCTT-CTGCTGAGACGGTTGTGATTGATGTTTTTAGCAG 301
Query 352 ATTGAATGGTAAGGATGAGATTACGAAAGAGCTGGATTCGAATGATGTTGTGATTAGCCA 411
||||| || ||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 302 ATTGAGTGCTAAGGATGATATTTGGAAAGAGCTGGATTCGAATGATGTTGTGATTAGCCA 361
Query 412 TGAATTAGCATTGAGAGTTCTGAGGGAACTTGAATCAAGCCCTGATGTTGCGGGGAGGTT 471
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 362 TGAATTAGCATTGAGAGTTCTGAGGGAACTTGAATCAAGCCCTGATGTTGCGGGAAGGTT 421
Query 472 TTTCAAATGGGGTTTGGAGGCTTATCCTCAAAAACTTTCTTCCAAGAGTTATAACACGAT 531
|||||| |||| ||||||||||||||||| |||||| || ||||||||||||||||||||
Sbjct 422 TTTCAAGTGGGTTTTGGAGGCTTATCCTCGAAAACTCTCCTCCAAGAGTTATAACACGAT 481
Query 532 GCTGCGTATTTTTGGTGTTAATGGA-TTAGTTGATGAGTTTT-GGAGGTTGGTTGATGAT 589
|||||||||| |||||||||||||| || |||||||| |||| ||| ||||||||||| |
Sbjct 482 GCTGCGTATTCTTGGTGTTAATGGACTT-GTTGATGAATTTTGGGA-GTTGGTTGATGCT 539
Query 590 ATGAAGAAGAAAGGGCATGGTGTTTCAGCTAATGTTAGGGACAGAGTCGGTGACAAGTTT 649
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 540 ATGAAGAAGAAAGGGCATGGTGTTTCAGCTAATGTTAGGGACAAAGTGGGTGACAAGTTT 599
Query 650 AAGAAAGATGGACTAGAAAATGATTTGGAGAGGCTGAAAGAGCTATTTGCTTCAGGTTCT 709
|||||||||||| |||| ||||||||||||||| |||||| | |||||||||||||||
Sbjct 600 CTGAAAGATGGACTGGAAAGTGATTTGGAGAGGCTTAAAGAGATTTTTGCTTCAGGTTCT 659
Query 710 ATGGATAACTCTGTTGACAAGGTTTGCAATAGGGTGTGTAAGATTGTGATGAAGGAAGTG 769
|||||||| || || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ATGGATAATTCGGTGGATAAGGTTTGCAATAGGGTGTGTAAGATTGTGATGAAGGAAGTG 719
Query 770 TGGGGTGCTGATGTAGAGAAACAGCTAAGGGATTTGAAGCTCGAGTTTAAAAGTGATGTG 829
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 TGGAGTGCTGATGTGGAGAAACAGCTAAGGGATTTGAAGCTCGAGTTTAAAAGTGATCTG 779
Query 830 GTAAAGATGGTTTTGGAAAAACTTGACGTGGATCCGAGGAAAGCTTTGTTGTTCTTTAGG 889
|| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 780 GTGAAGATGGTATTGGAAAAACTTGACGTGGATCCGAGGAAAGCTTTATTGTTCTTTAGG 839
Query 890 TGGATTGATGAGTCTGGAAGTTTTAAACATGATGAGAAGACGTATAATGCTATGGCCAGG 949
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 840 TGGATTGATGAGTCTGGCAGTTTTAAGCATGATGAGAAGACGTATAATGCTATGGCCAGG 899
Query 950 GTTTTAGGGAAAGAGAAGTTTCTTGATAGGTTTCAGCACATGATAGAAGAAATTAGGAGT 1009
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 900 GTTTTAGGGAAAGAGAAGTTTCTTGATAGGTTTCAGCACATCATAGAGGAAATTAGGAGT 959
Query 1010 GCTGGTTACGAGATGGAAATGGAGACTTATGTTAGGGTTTCAGCAAGGTTCTGTCAGACT 1069
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GCTGGCTACGAGATGGAAATGGAGACTTATGTTAGGGTTTCAGCAAGGTTCTGTCAGACT 1019
Query 1070 AAAATGATTAAAGAAGCTGTTGAGTTGTTTGAGTTTGCAATGGCAGGTAGCATTAGCAAC 1129
||||||||||||||||||||||| ||||| |||||||||||||| || | |||||||
Sbjct 1020 AAAATGATTAAAGAAGCTGTTGAATTGTTCGAGTTTGCAATGGC-GG--G---TAGCAAC 1073
Query 1130 ACACCCACCCCACACTGCTGCAGTTTACTGCTCAAGAAAATTGTCACTGCAAAGAAATTG 1189
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1074 ACACCCACCCCACACTGCTGTAGTTTACTGCTCAAGAAAATTGTCACTGCCAAGAAATTG 1133
Query 1190 GACATGGACTTATTTACAAGAACTTTGAAAGCTTATACTGGGAATGGCAACGTTGTGCCG 1249
||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1134 GACATGGACTTGTTTACAAGAACTGTGAAAGCTTATACTGGTAATGGCAACGTTGTGCCG 1193
Query 1250 GATGT-TATGCTGCAACATGTCCTCAAGTCTTTGAGAAGCGTTGATAGGTTTGGACAGAG 1308
||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1194 GAT-TCAATGCTGCAACATGTGCTCAAGTCTTTGAGAAGCGTTGATAGGTTTGGACAGAG 1252
Query 1309 CAACGAGGTGTTGAAAGCGATGAACGAAGGTGGATATGTTCCTAGCGGTGATTTGCAGAG 1368
||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1253 CAATGAGGTGTTGAAAGCAATGAACGAAGGTGGTTATGTTCCTAGCGGTGATTTGCAGAG 1312
Query 1369 TGTGATTGCATCAGGACTTAGTCGTAAGGGCAAGAAAGATGAAGCAAACGAACTTGTGAA 1428
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1313 TGTGATTGCATCGGGACTTAGTCGTAAGGGGAAGAAAGATGAAGCAAACGAACTTGTGAA 1372
Query 1429 CTTTATGGAAGCTTCTGGAAACCATTTAGATGATAAAGCAATGGCATCTTTAGTTGAAGG 1488
|||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1373 CTTTATGGAAGCCTCTGGAAATCATTTAGATGACAAAGCAATGGCATCTTTAGTTGAAGG 1432
Query 1489 GCACTGTGATGCTAAAGATCTCGAAGAAGCTTCAGAGTGTTTCAAGAAGATGATTGGGAA 1548
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 GCATTGTGATGCTAAAGATCTCGAAGAAGCTTCAGAGTGTTTCAAGAAGATGATTGGGAA 1492
Query 1549 AGAGGGAGTCTCTTATGCAGGTTATGCATTTGAGAAGTTGGTACTTGCTTATTGCAACAG 1608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 AGAGGGAGTCTCTTATGCAGGTTATGCATTTGAGAAGTTGGTACTTGCTTATTGCAACAG 1552
Query 1609 TTTTCAGGCAAGAGATGTATACAAGCTTTTCAGTGAGCTAGTGAAACAAAATCAGTTGAA 1668
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1553 TTTTCAGGCAAGAGATGTATACAAGCTTTTCACCGAGCTAGTGAAACAAAATCAGTTGAA 1612
Query 1669 ACCTTGGCACAGTACATACAAAATTATGGTGAGGAATCTGTTGATGAAGAAGGTAGCAAG 1728
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1613 ACCTTGGCACAGTACATACAAAATCATGGTGAGGAATCTATTGATGAAGAAGGTAGCAAG 1672
Query 1729 AGATGGTGGGTTTGAAGAAGCTTTGAGTCTTCTACCTATGATGAGAAATCACGGGTTCCC 1788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1673 AGATGGTGGGTTTGAAGAAGCTTTGAGTCTTCTACCTATGATGAGAAATCACGGGTTCCC 1732
Query 1789 TCCTTTCGTGGACCCGTTCATGGATTACTTATCGAATAGTGGAACAAGCGCAGAGGCTTT 1848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1733 TCCTTTCGTGGACCCGTTCATGGATTACTTATCGAATAGTGGAACAAGCGCAGAGGCTTT 1792
Query 1849 CGCTTTTCTGAAGGCTGTGACTTCAAAGAAGTTTCCATCTAATTCAATGGTTCTGCGTGT 1908
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1793 CGCTTTTCTGAAGGCCGTGACTTCAAAGAAGTTTCCATCTAATTCAATGGTTCTGCGTGT 1852
Query 1909 ATTCGAAGCTATGTTGAAGTCTGCAAGGCATAGTGAAGCTCAGGATTTACTGTCTATGTC 1968
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1853 ATTTGAAGCTATGTTGAAGTCTGCAAGGCATAGTGAAGCTCAGGATTTGCTGTCTATGTC 1912
Query 1969 CCCAAGTTATATCCGTCGCAATGCAGAAGTTCTAGAACTTTTCAATACCATGAAACCTGA 2028
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1913 CCCAAGTTATATCCGTCGCAATGCAGAAGTTCTAGAACTTTTCAATTCCATGAAACCTGA 1972
Query 2029 AAAATGTTCTTTAGAGAAACCTTTGCCTGCTCCTGCTCAAATTGAAGCTTAATTCATTAT 2088
|||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1973 TAAATGTTCCTTAGAGAAACCTTTGCCTGCTCCTGCTCAAATCGAAGCCTAATTCATTAT 2032
Query 2089 A 2089
|
Sbjct 2033 A 2033
> Ahg488448 jgi|Araly1|488448|fgenesh2_kg.6__1582__AT5G15980.1
Length=2420
Score = 1430 bits (774), Expect = 0.0
Identities = 1485/1823 (81%), Gaps = 70/1823 (4%)
Strand=Plus/Plus
Query 278 CGACGCTTTTCATCTGAGTCTGCGATAGAAGAGAAA-CTTCCTGCTGAGACTGTTGTGAT 336
||| |||| || |||||| ||||| | ||||||||| ||| |||||||| | | |||||
Sbjct 369 CGAAGCTTCTCGTCTGAGCCTGCGGTTGAAGAGAAATCTT-CTGCTGAGGTTATCGTGAT 427
Query 337 TGATGTTTTTAGCAGATTGAATGGTAAGGATGAGATTACGAAAGAGCTGGATTCGAATGA 396
|||| | || |||||||||| |||| ||||||| |||| ||||||| |||| |||| |||
Sbjct 428 TGATATCTTCAGCAGATTGAGTGGTGAGGATGATATTAGGAAAGAGTTGGAATCGAGTGA 487
Query 397 TGTTGTGATTAGCCATGAATTAGCATTG-AGAGTTCTGAGGGAA-CTTGAATCAAGCCCT 454
||| ||||||||||| || ||||| ||| || ||| ||| | || || ||||||| |||
Sbjct 488 TGTAGTGATTAGCCAGGACTTAGCTTTGAAG-GTTTTGA-GAAAGCTCGAATCAAACCCC 545
Query 455 GATGTTGCGGGGAGGTTTTTCAAATGGGGTT-TGGAGGCTTATCCTCAAAAACTT-TCTT 512
||||||||| ||||||||| | | || || |||||||| |||| | ||||| | |
Sbjct 546 GATGTTGCGAAAAGGTTTTTCCAGT-GGATTAAGGAGGCTTCTCCTGAGGAACTTAGC-T 603
Query 513 CCAAGAGTTATAACACGATGCTGCGTATTTTTGGTGTTAATGGA-TTAGTTGATGAGTTT 571
| |||| ||||||| ||||||||||||| | |||| ||||||| || || ||||||||
Sbjct 604 CGAAGAACTATAACATGATGCTGCGTATTCTGGGTGGTAATGGACTT-GTCAATGAGTTT 662
Query 572 TGGAGGTTGGTTGATGAT-ATGAAGAAGAAAGGGCATGGTGTT-TCAGCTAATGTTAGGG 629
||| |||||||||||| | |||||||||||||| |||||| || || |||||||||||||
Sbjct 663 TGGGGGTTGGTTGATG-TGATGAAGAAGAAAGGACATGGT-TTATCGGCTAATGTTAGGG 720
Query 630 ACAGAGTCGGTGACAAGTTTAAGAAAGATGGACTAGAAAATGATTTGGAGAGGCTGA-AA 688
| | ||| ||||| || ||| |||||||||| || || | |||||||| | | || | ||
Sbjct 721 ATAAAGTAGGTGAGAAATTTCAGAAAGATGGGCTGGAGAGTGATTTGGTGCGACTTAGAA 780
Query 689 GAGCTATTTGCTTCAGGTTCTATGGATAACTCTGTTGACAAGGTTTGCAATAGGGTGTGT 748
|| | |||||||||| || | | |||| || | || || |||||| |||||||||||
Sbjct 781 -AGTTTTTTGCTTCAGATTGTTTAGATAGTTCGGCGGAGAATGTTTGCGATAGGGTGTGT 839
Query 749 AAGATTGTGATGAAGGAAGTGTGGGGTGCTGATGTAGAGAAACAGCTAAGGGATTTGAA- 807
||||||||||||||||||| ||||||| |||||| ||||||| | | || ||||||||
Sbjct 840 AAGATTGTGATGAAGGAAGAATGGGGTGATGATGTGGAGAAACGGGTGAGAGATTTGAAT 899
Query 808 GCTCGAGTTTAAAAGTGATGTGGTAAAGATGGTTTTGGAAAAACTTGACG-TGGATCCGA 866
| | |||||||| |||||| | || |||||| || |||||| ||||| | || | || |
Sbjct 900 G-TTGAGTTTAAGAGTGATTTAGTGAAGATGATTGTGGAAAGTCTTGATGTTGTA-CCTA 957
Query 867 GGAAAGCTTTGTTGTTCTTTAGGTGGATTGATGAGTCTGGAAGTTTTAAACATGATGAGA 926
|||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||
Sbjct 958 GGAAAGCTTTGTTGTTCTTTCGGTGGATTGATGAGTCTGGTCTTTTTAAGCATGATGAGA 1017
Query 927 AGACGTATAATGCTATGGCCAGGGTTTTAGGG-AAAGAGAAGTTTCTTGATAGGTTTCAG 985
| || |||||||||||||| |||||||| ||| |||||||| ||||| ||||| ||||||
Sbjct 1018 AAACTTATAATGCTATGGCTAGGGTTTT-GGGAAAAGAGAAATTTCTCGATAGATTTCAG 1076
Query 986 CACAT-GATAGAAGAAATTAGGAGTGCTGGTTACG-AGATGGAAATGGAGACTTATGTTA 1043
|||| | | |||||||| ||||||| |||||| | || ||||||| |||||||||||||
Sbjct 1077 AACATCG-TTGAAGAAATGAGGAGTGTTGGTTATGAAG-TGGAAATAGAGACTTATGTTA 1134
Query 1044 GGGTTTCAGCAAGGTTCTGTCAGACTAAAATGATTAAAGAAGCTGTTGAGTTGTTTGAGT 1103
| |||||| |||||||||| ||||||||| |||| || ||||||||||| |||||||||
Sbjct 1135 GAGTTTCAACAAGGTTCTGCCAGACTAAATTGATCAAGGAAGCTGTTGACTTGTTTGAGA 1194
Query 1104 TTGCAATGGCAGGTAGCATTAGCAACACACCCACCCCACACTGCTGCAGTTTACTGCTCA 1163
|||| ||||||||||| | ||| |||| ||||||||||||||||| | |||| ||||||
Sbjct 1195 TTGCTATGGCAGGTAGTAGTAGTAACAAACCCACCCCACACTGCTTCTGTTTGTTGCTCA 1254
Query 1164 AGAAAATTGTCACTGCAAAGAAAT-TGGACATGGACTTATTTACAAGAACTTTGAAAGCT 1222
|||||||||||||||| ||| | | | || ||||| || ||| ||||| || ||||||||
Sbjct 1255 AGAAAATTGTCACTGCCAAG-ATTCTAGATATGGATTTGTTTTCAAGAGCTCTGAAAGCT 1313
Query 1223 TATACTGGGAATGGCAACGTTGTGCCGGA-TGTTATGCTGCAACAT--GTCCTCAAGTCT 1279
||||| | ||||| || | | || |||| | | |||| || || ||| | |||||
Sbjct 1314 TATACCAGAAATGGTAATGCTATGACGGATTCCT-TGCT--AAAATCCGTCTTAAAGTCC 1370
Query 1280 TTGAGAAGCGTTGATAGGTTTGGACAGAGCAAC-GAGGTGTTGAAAGCGATGAACG-AAG 1337
||||||||||| |||||| ||| || |||| || ||| ||||||||| ||||| | |||
Sbjct 1371 TTGAGAAGCGTGGATAGGGTTGAACTGAGC-ACTGAGCTGTTGAAAGAAATGAA-GAAAG 1428
Query 1338 GTGGATATGTTCCTAGCGGTGATTTGCAGAGTGTGATTGCATCAGGACTTAGTCGTAAGG 1397
| || ||||||||||| |||||| ||||||| ||||||||||| | |||||||||||||
Sbjct 1429 GAGGTTATGTTCCTAGTGGTGATATGCAGAGCATGATTGCATCAAGTCTTAGTCGTAAGG 1488
Query 1398 GCAAGAAAGATGAAGCAAACGAACTTGTGA-ACTTTATGGAAGCTTCTGGAAACCATTTA 1456
| ||||| |||||||| | ||| |||| | ||||||||||||| || ||||| || ||
Sbjct 1489 GAAAGAAGGATGAAGCTGATGAATTTGT-AGACTTTATGGAAGCATCCGGAAATAATCTA 1547
Query 1457 GATGATAAAGCAATGGCATCT-TTAGTTGAAGGGCACTGTGATGCTAAAGATCTCGAAGA 1515
||||| || |||||||| ||| || ||||||||| | |||||| || ||||| || ||
Sbjct 1548 GATGACAAGGCAATGGCGTCTCTT-GTTGAAGGGTATTGTGATTCTGGGGATCTTGATGA 1606
Query 1516 AGCTTCAGAGTGTTTCAAGAAGATGATTGGGAAA-GAGGGAGTC-TCTTATGCAGGTTAT 1573
||||| || ||||||| |||| ||| || ||||| | || || | || ||||| | ||||
Sbjct 1607 AGCTTTAGTGTGTTTCGAGAAAATGGTT-GGAAACGCGGCAGCCTTC-TATGCCGATTAT 1664
Query 1574 GCATTTGAGAAGTTGGTACTTGCTTATTGCAAC-AGTTTTCAGGCAAGAGATGTATACAA 1632
||||||||||||||||| ||||||||||||||| || ||| | |||||| | ||||||
Sbjct 1665 GCATTTGAGAAGTTGGTTCTTGCTTATTGCAACAAG-AATCAAGTAAGAGACGCATACAA 1723
Query 1633 GCTTTTCAGTG-AGCTAGTGA-A-ACAAAATCAGTTGAAACCTTGGCACAGTACATACAA 1689
|||||| |||| | | ||| | | | |||||||| |||||||| | || || || |||||
Sbjct 1724 GCTTTTGAGTGCA-CAAGT-ACAGA-AAAATCAGCTGAAACCTCGTCATAGCACGTACAA 1780
Query 1690 AAT-TATGGTGAGGAATCTGTTGATGAAGAAGGTAGCAAGAGATGGTGGGTTTGAAGAAG 1748
||| | |||||| |||||||||||| |||||| | ||||| |||||||||||||||||||
Sbjct 1781 AATCT-TGGTGACGAATCTGTTGATAAAGAAGATTGCAAGGGATGGTGGGTTTGAAGAAG 1839
Query 1749 CTTTGAGTCTTCTACCTATGATGAGAA-ATCACGGGTTCCCTCCTTTCGTGGACCCGTTC 1807
|||||||||||||||| || |||| || |||||||||||||||||||| | ||||| |||
Sbjct 1840 CTTTGAGTCTTCTACCGATAATGA-AAGATCACGGGTTCCCTCCTTTCATTGACCCTTTC 1898
Query 1808 ATG-GATTACTTATCGAATAG-TGGAACAAGCGCAGAGGCTTTCGCTTTTCTGAAGGCTG 1865
||| | |||||| || || | ||||| |||| |||| ||| ||| |||| | ||||||
Sbjct 1899 ATGAG-TTACTTCTC-AACAACTGGAAAAAGCACAGAAGCTCTCGGTTTTTTTAAGGCTA 1956
Query 1866 TGACTTCAAAGAAGTTTCCATCTAAT-TCAATGGTTCTGCGTGTATTCGAAGCTATGTTG 1924
|||| || ||||| |||||||||| | ||| |||||||||||||||||||| ||||| ||
Sbjct 1957 TGACCTCGAAGAACTTTCCATCTA-TGTCAGTGGTTCTGCGTGTATTCGAAACTATGATG 2015
Query 1925 AAGTCTGCAAGGCATAGTGAAGCTCAGGATTTACTGTCTATGTCCCCAAGTTATATCCGT 1984
||||||||||| || |||||||| || |||||||| ||| ||| ||||| |||||||||
Sbjct 2016 AAGTCTGCAAGACACAGTGAAGCACAAGATTTACTCTCTCTGTGCCCAAACTATATCCGT 2075
Query 1985 CGCAATGCAGAAGTTCTAGAACTTTTCAATACCATGAAACCTGAAAAATGT-T-CTTTAG 2042
|||| | || ||||||||||| |||||||||||||||||| || | || | || |||
Sbjct 2076 AACAATCCGGATGTTCTAGAACTCTTCAATACCATGAAACCT-AACGA-GTCTACTGTAG 2133
Query 2043 AGAAACCTTTGCCTGCTCCTGCT 2065
| ||||||||| ||||| |||||
Sbjct 2134 AAAAACCTTTGGCTGCTTCTGCT 2156
> Ahg908198 jgi|Araly1|908198|Al_scaffold_0002_1279
Length=537
Score = 438 bits (237), Expect = 7e-122
Identities = 423/512 (83%), Gaps = 16/512 (3%)
Strand=Plus/Plus
Query 487 GGAGGCTTATCCTCAAAAACTT-TCTTCCAAGAGTTATAACACGATGCTGCGTATTTTTG 545
|||||||| |||| | ||||| | || |||| |||||||| |||| |||||||| | |
Sbjct 18 GGAGGCTTCTCCTGAGGAACTTAGC-TCGAAGAATTATAACATGATGTTGCGTATTCTGG 76
Query 546 GTGTTAATGGA-TTAGTTGATGAGTTTTGGAGGTTGGTTGATGAT-ATGAAGAAGAAAGG 603
||||||||||| || || |||||||||||| |||||||||||| | ||||||||||||||
Sbjct 77 GTGTTAATGGACTT-GTCGATGAGTTTTGGGGGTTGGTTGATG-TGATGAAGAAGAAAGG 134
Query 604 GCATGGTGTT-TCAGCTAATGTTAGGGACAGAGTCGGTGACAAGTTTAAGAAAGATGGAC 662
||||| || || ||||||||||| || | ||| ||||| || ||| |||||||||| |
Sbjct 135 ACATGG-CTTATCGGCTAATGTTAGAGATAAAGTAGGTGAGAAATTTCAGAAAGATGGGC 193
Query 663 TAGAAAATGATTTGGAGAGGCTGA-AAGAGCTATTTGCTTCAGGTTCTATGGATAACTCT 721
| || | |||||||| |||||||| || |||| |||||||||| || | | ||||| ||
Sbjct 194 TGGAGAGTGATTTGGTGAGGCTGAGAA-AGCTTTTTGCTTCAGATTGTTTAGATAATTCG 252
Query 722 GTTGACAAGGTTTGCAATAGGGTGTGTAAGATTGTGATGAAGGAAGTGTGGGGTGCTGAT 781
| || || |||||| |||||||||||||||||||||||||||||| |||||| | ||||
Sbjct 253 GCGGAGAATGTTTGCGATAGGGTGTGTAAGATTGTGATGAAGGAAGAGTGGGGCGATGAT 312
Query 782 GTAGAGAAACAGCTAAGGGATTTGAA-GCTCGAGTTTAAAAGTGATGTGGTAAAGATGGT 840
|| ||||||| | | || |||||||| | | |||||||| |||||| | || |||||| |
Sbjct 313 GTGGAGAAACGGGTGAGAGATTTGAATGTT-GAGTTTAAGAGTGATTTAGTGAAGATGAT 371
Query 841 TTTGGAAAAACTTGACGTGGATCCGAGGAAAGCTTTGTTGTTCTTTAGGTGGATTGATGA 900
| |||||| ||||| || || || |||||||||||||||||||| |||||||||||||
Sbjct 372 TGTGGAAAGTCTTGATGTTGAACCTAGGAAAGCTTTGTTGTTCTTCCGGTGGATTGATGA 431
Query 901 GTCTGGAAGT-TTTAAACATGATGAGAAGACGTATAATGCTATGGCCAGGGTTTTAGGGA 959
|||||| | ||||| ||||||||||| || |||||||||||||| |||||||| ||||
Sbjct 432 GTCTGGTC-TCTTTAAGCATGATGAGAAAACTTATAATGCTATGGCTAGGGTTTT-GGGA 489
Query 960 AA-GAGAAGTTTCTTGATAGGTTTCAGCACAT 990
|| ||||| ||||| ||||| |||||| ||||
Sbjct 490 AAAGAGAAATTTCTCGATAGATTTCAGAACAT 521
> Ahg891288 jgi|Araly1|891288|Al_scaffold_0007_3274
Length=483
Score = 388 bits (210), Expect = 8e-107
Identities = 383/466 (82%), Gaps = 14/466 (3%)
Strand=Plus/Plus
Query 487 GGAGGCTTATCCTCAAAAACTT-TCTTCCAAGAGTTATAACACGATGCTGCGTATTTTTG 545
|||||||| |||| | ||||| | || |||| |||||||| ||||||||||||| | |
Sbjct 21 GGAGGCTTCTCCTGAGGAACTTAGC-TCGAAGAATTATAACATGATGCTGCGTATTCTGG 79
Query 546 GTGTTAATGGA-TTAGTTGATGAGTTTTGGAGGTTGGTTGATGAT-ATGAAGAAGAAAGG 603
||||||||||| || || |||||||||||| |||||||||||| | ||||||||||||||
Sbjct 80 GTGTTAATGGACTT-GTCGATGAGTTTTGGGGGTTGGTTGATG-TGATGAAGAAGAAAGG 137
Query 604 GCATGGTGTT-TCAGCTAATGTTAGGGACAGAGTCGGTGACAAGTTTAAGAAAGATGGAC 662
||||| || || ||||||||||| || | ||| ||||| || ||| |||||||||| |
Sbjct 138 ACATGG-CTTATCGGCTAATGTTAGAGATAAAGTAGGTGAGAAATTTCAGAAAGATGGGC 196
Query 663 TAGAAAATGATTTGGAGAGGCTGA-AAGAGCTATTTGCTTCAGGTTCTATGGATAACTCT 721
| || | |||||||| |||||||| || |||| |||||||||| || | | ||||| ||
Sbjct 197 TGGAGAGTGATTTGGTGAGGCTGAGAA-AGCTTTTTGCTTCAGATTGTTTAGATAATTCG 255
Query 722 GTTGACAAGGTTTGCAATAGGGTGTGTAAGATTGTGATGAAGGAAGTGTGGGGTGCTGAT 781
| || || ||||| |||||||||||||||||||||||||||||| ||| || | ||||
Sbjct 256 GCGGAGAATGTTTGTGATAGGGTGTGTAAGATTGTGATGAAGGAAGAGTGTGGCGATGAT 315
Query 782 GTAGAGAAACAGCTAAGGGATTTGAA-GCTCGAGTTTAAAAGTGATGTGGTAAAGATGGT 840
|| ||||||| | | || |||||||| | | |||||||| |||||| | || |||||| |
Sbjct 316 GTGGAGAAACGGGTGAGAGATTTGAATGTT-GAGTTTAAGAGTGATTTAGTGAAGATGAT 374
Query 841 TTTGGAAAAACTTGACGTGGATCCGAGGAAAGCTTTGTTGTTCTTTAGGTGGATTGATGA 900
| |||||| ||||| || || || |||||||||||||||||||| |||||||||||||
Sbjct 375 TGTGGAAAGTCTTGATGTTGAACCTAGGAAAGCTTTGTTGTTCTTCCGGTGGATTGATGA 434
Query 901 GTCTGGAAGT-TTTAAACATGATGAGAAGACGTATAATGCTATGGC 945
|||||| | ||||| ||||||||||| || ||||||||||||||
Sbjct 435 GTCTGGTC-TCTTTAAGCATGATGAGAAAACTTATAATGCTATGGC 479
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90464331875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5