BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G02493.1

Length=415
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg927734 jgi|Araly1|927734|scaffold_300191.1                        316    6e-86


> Ahg927734 jgi|Araly1|927734|scaffold_300191.1
Length=317

 Score =  316 bits (171),  Expect = 6e-86
 Identities = 201/215 (93%), Gaps = 3/215 (1%)
 Strand=Plus/Plus

Query  121  ATTTCCGATACAATCATTGTTATATCAACTGGTTTCTTAGGGACACAACTGGATATGGAA  180
            |||| | |||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  103  ATTTGCTATACAAGCATTGTTATATCAACTGGTTTCTTATGGACACAACTGGATATGGAA  162

Query  181  AG---CATCATGAGCTTGAAGAGAAAGGAGAAGAAATCCCAAAGTAGAAGACTCGGGAAA  237
            ||   |||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct  163  AGCATCATCATGAGCTTGAGGAGAAAGGAGAAGAAATCACAAAGTAGAAGACTCGGGAAA  222

Query  238  TATCTGAAAGAACAAAAGGGGAGGATCTACATCATTAGAAGATGTGTGATGATGCTCCTT  297
            ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  223  TATCTCAAAGAACAAAAGGGGAGGATCTACATCATTAGAAGATGTGTGATGATGCTTCTT  282

Query  298  TGTTCGCATGATTAATTTATTTATTACGATACACA  332
            |||||   |||||||||||||||||||||||||||
Sbjct  283  TGTTCATGTGATTAATTTATTTATTACGATACACA  317



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14918835299


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5