BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02500.1
Length=1001
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903051 jgi|Araly1|903051|Al_scaffold_0003_179 1122 0.0
> Ahg903051 jgi|Araly1|903051|Al_scaffold_0003_179
Length=861
Score = 1122 bits (607), Expect = 0.0
Identities = 807/895 (90%), Gaps = 47/895 (5%)
Strand=Plus/Plus
Query 1 ATGGTTTTGCGTGGCGAAGAGCTTGAGTTTAATCTAAGAGAATGGGCACGACAAGGCCAT 60
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1 ATGGTTTTGCGTGGCGAAGAGCTTGAGTTTAACCTAAGAGAATGGGCACGAAAAGGCCAT 60
Query 61 TTAACTCGCGAAGATCAAAGTTCTAGAAGGTTCTCTGCCTCTTGTATCCGAAGCTTCCGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTAACTCGCGAAGATCAAAGTTCTAGAAGGTTCTCTGCCTCTTGTATCCGAAGCTTCCGA 120
Query 121 GAAGACCAC-A----A-GTCTTGTACAACAAACGTCACCATCTCTAGTACTGCCTCTTCT 174
||||||||| | | |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 GAAGACCACAAGTCGACGTCTTGTACAACAAACTTCACCATCTCTAGTACTGCCTCTTCT 180
Query 175 CCGGGTTACTCCCTCAAA---GATGAGATCGATCCATCAAATTATTCCTTCAGTAGTGCA 231
|| |||||||| |||||| |||||||| || ||||||||||||||||||| |||||||
Sbjct 181 CCCGGTTACTCGCTCAAAGGTGATGAGATTGACCCATCAAATTATTCCTTCACTAGTGCA 240
Query 232 CTCAAGGCATTGCAAGCAAAATCAGTGTACAAGAAGAATTGGGATTGGTTGAAACCAGAA 291
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTCAAGGCATTGCAAGAAAAAACAGTGTACAAGAAGAATTGGGATTGGTTGAAACCAGAA 300
Query 292 GGAGTTGAGCTAAACTCGAAATGGAACGAAGCAGAGAAGTATATATGCAATCCTTTATCT 351
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 301 GGAGTTGAGCTAAACTCGAAATGGAACGAAGCAGAGAAGTATATTTGCAATCCTTTGTCT 360
Query 352 GGTGAAGTTCCTTTGGAGTGTTTGTCTTCTAAAACCCTAAATTCAAGATCTTTCAGAAAC 411
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 GGTGAAGTTCCTTTGGAGTGTTTGTCTTCTAAAACCCTAAATTCAAGATCTTTTAGAAAC 420
Query 412 TTATCCACCAAGCATGCTCCACTCATGATTTTACCTTCTAATTATAATCTCAACATTCCA 471
|||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 421 TTATCCACCATGCATGCTCCACTCATGATTTTACCTTCTAATCCTAATCCCAACATTCCA 480
Query 472 AGAACGGTTAATCCTAAAGTTAGAATCATTCATGAGGATCCTAGATCTCCCGATCCTGTT 531
|||| | | ||| | | || ||| | | | | | | ||||||||||||||
Sbjct 481 AGAA---TCA-TCC-AC-G--AGGATC---C-T-A--A----A-A-CTCCCGATCCTGTT 519
Query 532 CTAATTCAAGATAAGAAAGTTGTGGGGTCTAAACGAGATGTCGTGAGTGCACAGGGAAAT 591
|| |||||||| || |||||||||||||| |||||||||||||| ||||||| || ||||
Sbjct 520 CTTATTCAAGAAAAAAAAGTTGTGGGGTCAAAACGAGATGTCGTTAGTGCACCGGAAAAT 579
Query 592 GTTAGTGCAGCAAAGACGACGCCGATCATGGAGAGATTAACGAAAAGACAGGTGGGAGCT 651
|||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 580 GTTAGTGCAGTGAAGACGACGCCGATCATGGAGAGATCGACGAAAAGACAGGTGGAAGCT 639
Query 652 GATGATTCGCCTGTTGAGTATGCACTAAAGTTGAAAGCTCAACAAGAGGATGtgaagtta 711
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 GATGATTCGCATGTTGAGTATGCACTAAAGTTGAAAGCTCAACAAGAGGATGTGAAGTTA 699
Query 712 gaagaaaatgagcaaaatatgatgacaaaagaaattcaagaagaaaagaaagagaagaag 771
|||||||| |||||||||||||||||||||||||||| || ||| |||| |||| |||
Sbjct 700 GAAGAAAAGGAGCAAAATATGATGACAAAAGAAATTC--GA-GAA--GAAA-AGAA-AAG 752
Query 772 aagagaagaggaagTGGGTTT-TCC-T--CATGGATAAGGAAAATGCAAAGACAACCAAG 827
| | |||| || ||| ||| || | |||||| || ||||||||||| |||||||||
Sbjct 753 A-G-GAAGTGG--GTG--TTTCTCAATGTCATGGAAAAAGAAAATGCAAAAACAACCAAG 806
Query 828 AAAATCCAAATGCATATTTCTCATTTGTCTTCCTCATCTTATCAAAGCTTCTTGA 882
|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 807 AACATCCAAATGCATATTTCTCATTTGTCTTCCTCATCTTTTCAAAGCTTCTTGA 861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37207966992
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5