BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02510.1
Length=1569
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927738 jgi|Araly1|927738|scaffold_300195.1 2034 0.0
Ahg488454 jgi|Araly1|488454|fgenesh2_kg.6__1588__AT5G16040.1 1315 0.0
> Ahg927738 jgi|Araly1|927738|scaffold_300195.1
Length=1227
Score = 2034 bits (1101), Expect = 0.0
Identities = 1189/1231 (97%), Gaps = 7/1231 (1%)
Strand=Plus/Plus
Query 70 ctctcctctctctttctctGTGTCTAATGGTTACAGCTACTTCAATCATAGCCTGGGGCT 129
|||| |||| ||||||||| | ||| |||||| |||||||||||||||||||||||||||
Sbjct 1 CTCT-CTCTTTCTTTCTCTCTCTCTGATGGTTTCAGCTACTTCAATCATAGCCTGGGGCT 59
Query 130 CTGGAGAAGATGGGCAACTAGGAATTGGTACCAACGAAGAAAAGGAATGGGCTTGCGTCG 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CTGGAGAAGATGGGCAACTAGGAATTGGTACCAACGAAGAAAAGGAATGGGCTTGCGTCG 119
Query 190 TTGAAGCTCTCGAGCCTTACTCTGTTCGCTCCGTTGTCTCTGGTAGCCGTAACTCCCTCG 249
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 120 TTGAAGCTCTCGAGCCTTACTCTGTTCGCTCTGTTGTCTCTGGTAGCCGTAACTCCCTCG 179
Query 250 CCATTTGCGATGATGGCACGATGTTTACATGGGGTTGGAATCAAAGAGGTACATTAGGAC 309
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CCATTTGCGACGATGGCACGATGTTTACATGGGGTTGGAATCAAAGAGGTACATTAGGAC 239
Query 310 ACCAACCAGAAACAAAAACAGAGAACATCCCTAGTCGAGTCAAGGCCCTTGCCAATGTCA 369
||| |||||||||||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 240 ACCCGCCAGAAACAAAAACAGAGAACATCCCCAGTCGAGTTAAGGCCCTTGCCAAAGTCA 299
Query 370 AGATCACTCAGGCAGCAATTGGTGGTTGGCATTGTTTAGCTGTTGATGATCAAGGCCGAG 429
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AGATTACTCAGGCAGCAATTGGTGGTTGGCATTGTTTAGCTGTTGATGATCAAGGCCGAG 359
Query 430 CATATGCGTGGGGTGGGAATGAATATGGACAATGTGGTGAAGAGCCTTTAAAAGACGAGA 489
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 360 CATATGCGTGGGGTGGGAATGAATATGGACAATGTGGTGAAGAGCCTTTAAAGGACGAGA 419
Query 490 TGGGTAGGCCCGTACGAAGAGATATTGTGATCCCTAAGCGTTGTGCCCCCAAACTTACAG 549
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 420 TGGGTAGGCCCGTGCGAAGAGATATTGTGATCCCTAAGCGTTGTGCCCCGAAACTTACAG 479
Query 550 T-CAGACAGGTAGCTGCAGGTGGTACTCACTCGGTGGTTCTT-ACACGCGAAGGTCATGT 607
| | ||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 480 TTC-GACAGGTAGCTGCAGGTGGTACTCACTCGGTGGTT-TTGACACGCGAAGGTCATGT 537
Query 608 GTGGACTTGGGGTCAACCGTGGCCTCCCGGTGACATAAAACAAATATCTGTTCCTGTAAG 667
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 538 GTGGACTTGGGGTCAACCGTGGCCCCCCGGTGACATAAAACAAATATTTGTTCCTGTAAG 597
Query 668 AGTTCAAGGTCTTGAAAATGTCCGTCTTATTGCTGTTGGAGCATTTCATAATCTGGCTCT 727
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 598 AGTTCAAGGTCTTGAAAATGTCTGTCTTATCGCTGTTGGAGCATTTCATAATCTGGCTCT 657
Query 728 TGAAGAAGATGGGAGATTATTGGCATGGGGTAATAACGAATACGGACAACTTGGAACCGG 787
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 658 TGAAGAAGATGGCAGATTATTGGCATGGGGTAATAACGAATACGGGCAACTTGGAACCGG 717
Query 788 TGACACCCAGCCAACATCTCATCCTGTTCCAGTCCAAGGCCTCGATGATCTCACTTTGGT 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TGACACCCAGCCAACATCTCATCCTGTTCCAGTCCAAGGCCTCGATGATCTCACTTTGGT 777
Query 848 CGATATTGCTGCGGGTGGATGGCATTCAACGGCTCTAACTGATAAAGGAGAGGTGTATGG 907
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 778 TGATATTGCTGCGGGTGGATGGCATTCAACGGCTTTAACTGATAAAGGAGAGGTGTATGG 837
Query 908 TTGGGGAAGAGGAGAACATGGAAGACTCGGGCTTGGTGACAATGACAAGAGCAGCAAAAT 967
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 838 GTGGGGAAGAGGAGAACACGGAAGACTCGGGTTTGGTGACAATGACAAGAGCAGCAAAAT 897
Query 968 GGTTCCACAGAAAGTTAATCTTCTAGCTGAAGAAGATATAATTCAGGTTTCTTGTGGCGG 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 898 GGTTCCACAGAAAGTTAATCTTCTAGCTGAAGAAGATATAATTCAGGTTTCTTGTGGTGG 957
Query 1028 AACACATTCAGTTGCTTTGACAAGAGATGGCAGAATCTTCTCGTTTGGTAGAGGAGATCA 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AACACATTCAGTTGCTTTGACAAGAGATGGCAGAATCTTCTCGTTTGGTAGAGGAGATCA 1017
Query 1088 TGGTAGACTTGGTTATGGAAGGAAAGTAACAACAGGACAGCCATTGGAGTTGCCTATAAA 1147
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1018 TGGTAGACTTGGTTATGGAAGGAAAGTAACCACAGGACAGCCATTGGAGTTACCTATAAT 1077
Query 1148 GATTCCTCCGCCTGAAGGAAGCTTTAATCACACAGACGAAGAAGAAGAAGGAAAATGGTC 1207
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1078 GATTCCTCCGCCTGAAGGAAGCTTTAATCACGCAGACGAAGAAGAAGAAGGAAAATGGTC 1137
Query 1208 AGCTAAATCGATTGCTTGCGGTGGCCGCCACACTCTTGCCATTGTAGAATGGAAGTCCGA 1267
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1138 AGCTAAATCGATTGCTTGCGGTGGCCGACACACTCTTGCCATTGTAGAATGGAAGTCCGA 1197
Query 1268 TGATATTTGA-CACTCAATCTCACTGGTCAC 1297
|||||| ||| | |||||||||||||| |||
Sbjct 1198 TGATATCTGATC-CTCAATCTCACTGGGCAC 1227
> Ahg488454 jgi|Araly1|488454|fgenesh2_kg.6__1588__AT5G16040.1
Length=1397
Score = 1315 bits (712), Expect = 0.0
Identities = 1027/1179 (87%), Gaps = 22/1179 (2%)
Strand=Plus/Plus
Query 96 ATGG-TTACAGCTACTTCAATCATAGCCTGGGGCTCTGGAGAAGATGGGCAACTAGGAAT 154
|||| || |||||||||| ||||||||||||| ||||||||||| |||||||||||| |
Sbjct 22 ATGGCTT-CAGCTACTTCCGTCATAGCCTGGGGTTCTGGAGAAGACGGGCAACTAGGACT 80
Query 155 TGGTACCAACGAAGAAAAGGAATGGGCTTGCGTCGTTGAAGCTCTCGAGCCTTAC-TCTG 213
||| ||| | ||||||||||||| ||||| |||||| |||||||| ||||||| | | |
Sbjct 81 TGGAACCGATGAAGAAAAGGAATTGGCTTCCGTCGTCGAAGCTCTTGAGCCTTTCAAC-G 139
Query 214 TTCGCTCCGTTGTCTCTGGTAGCCGTAACTCCCTCGCCATTTGCGATGATGGCACGATGT 273
|||||||||| ||| ||||||||| || ||||||||||||||||||||||||| | |||
Sbjct 140 TTCGCTCCGTCGTCGGTGGTAGCCGCAATTCCCTCGCCATTTGCGATGATGGCAAGCTGT 199
Query 274 TTACATGGGGTTGGAATCAAAGAGGTACATTAGGACACCAACCAGAAACAAAAACAGAGA 333
|||||||||||||||||||||| |||||||||||||||| ||||| || |||||||| |
Sbjct 200 TTACATGGGGTTGGAATCAAAGGGGTACATTAGGACACCCTCCAGAGACTAAAACAGA-A 258
Query 334 A-CATCCCTAGTCGAGTCAAGGCCCTTGCCAATGTCAAGATCACTCAGGCAGCAATTGGT 392
| || |||||||| ||| ||| | |||||||| |||||||| ||||||||| ||||||
Sbjct 259 AGCACCCCTAGTCTAGTTAAGTCTCTTGCCAACGTCAAGATTGTTCAGGCAGCTATTGGT 318
Query 393 GGTTGGCATTGTTTAGCTGTTGATGATCAAGGCCGAGCATATGCGTGGGGTGGGAATGAA 452
|||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 319 GGTTGGCATTGTTTAGCTGTCGATGATCAAGGCCGAGCATATGCTTGGGGTGGAAATGAA 378
Query 453 TATGGACAATGTGGTGAAGAGCCTTTAAAAGACGAGATGGGTAGGCCCGTACGAAGAGAT 512
|||||||| |||||||||||||||| || || |||| |||||||| || || || |||
Sbjct 379 TATGGACAGTGTGGTGAAGAGCCTTCCAAGGATGAGACAGGTAGGCCTGTGCGGAGGGAT 438
Query 513 ATTGTGATCCCTAAGCGTTGTGCCCC-CAAACTTACAGTCAGACAGGTAGCTGCAGGTGG 571
||||| |||||||||||||||||||| | ||||||||||| |||||||||||||||| ||
Sbjct 439 ATTGTAATCCCTAAGCGTTGTGCCCCGC-AACTTACAGTCCGACAGGTAGCTGCAGGGGG 497
Query 572 TACTCACTCGGTGGTTCTTACACGCGAAGGTCATGTGTGGACTTGGGGTCAACCGTGGCC 631
||||||||| |||||||| || || |||||| |||| |||||||||||||||||||||||
Sbjct 498 TACTCACTCTGTGGTTCTAACCCGTGAAGGTTATGTATGGACTTGGGGTCAACCGTGGCC 557
Query 632 TCCCGGTGACATAAAACAAATATCTGTTCCTGTAAGAGTTCAAGGTCTTGAAAATGTCCG 691
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||
Sbjct 558 TCCCGGTGACATAAAACAAATATCTGTTCCCGTAAGAGTTCAGGGTCTTGAAAACGTTCG 617
Query 692 TCTTATTGCTGTTGGAGCATTTCATAATCTGGCTCTTGAA-GAAGATGGGAGATTATTGG 750
||| |||||||||||||||||||||||| ||||||| ||| |||||||||| || | ||
Sbjct 618 TCTGATTGCTGTTGGAGCATTTCATAATTTGGCTCT-GAAAGAAGATGGGACTTTGTGGG 676
Query 751 CATGGGGTAATAACGAATACGGACAACTTGGAACCGGTGACACCCAGCCAACATCTCATC 810
| ||||||||||| ||||| |||||||||||||| || || || || || | |||| |||
Sbjct 677 CTTGGGGTAATAATGAATATGGACAACTTGGAACTGGAGATACACAACCGAGATCTTATC 736
Query 811 CTGTTCCAGTCCAAGGCCTCGATGATCTCACTTTGGTCGATATTGCTGCGGGTGGATGGC 870
|| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 737 CTATTCCAGTCCAAGGCCTTGATGATCTCACTTTGGTTGATATTGCTGCGGGTGGATGGC 796
Query 871 ATTCAACGGCTCTAACTGATAAAGGAGAGGTGTATGGTTGGGGAAGAGGAGAACATGGAA 930
||||||| ||| |||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 797 ATTCAACAGCTTTAACCAATGAAGGAGAGGTGTATGGTTGGGGAAGAGGAGAACATGGAA 856
Query 931 GACTCGGGCTTGGTGACAATGACAAGAGCAGCAAAATGGTTCCACAGAAAGTTAATCTTC 990
| ||||| |||||||||||||||||||||| |||||| |||| |||||||||||||| |
Sbjct 857 GGCTCGGATTTGGTGACAATGACAAGAGCAGTAAAATGCTTCCGCAGAAAGTTAATCT-C 915
Query 991 T-AGCTGAAGAAGATATAATTCAGGTTTCTTGTGGCGGAACACATTCAGTTGCTTTGACA 1049
| ||||| |||||| || |||||||| |||||||||||||| |||||||| ||||||||
Sbjct 916 TTAGCTGGAGAAGACATCATTCAGGTCTCTTGTGGCGGAACTCATTCAGTCACTTTGACA 975
Query 1050 AGAGATGGCAGAATCTTCTCGTTTGGTAGAGGAGATCATGGTAGACTTGGTTATGGAAGG 1109
||||| || || ||||||||||||||| | ||||| || |||||||| || ||||||||
Sbjct 976 AGAGACGGTAGGATCTTCTCGTTTGGTCGGGGAGACCACGGTAGACTCGGCTATGGAAGA 1035
Query 1110 AAAGTAACAACAGGACAGCCATTGGAG-TTGCCTATAAAGATTCCTCCGCCT-GAAGGAA 1167
||||| || |||||||| ||||||||| || |||||| | ||||| || ||| ||||||
Sbjct 1036 AAAGTGACTACAGGACAACCATTGGAGCTT-CCTATAGACATTCCACC-CCTAGAAGGAC 1093
Query 1168 GCTTTAATCACACAGACGAAGAAGAAGAAGGAAAATGG-TCAGCTAAATCGAT-T-GCTT 1224
| || || ||||| || |||||||| || ||||||||| | ||||||| | || | ||||
Sbjct 1094 GGTTCAACCACACCGATGAAGAAGACGATGGAAAATGGAT-AGCTAAA-C-ATGTAGCTT 1150
Query 1225 GCGGTGGCCGCCACACTCTTGCCATTGTAGAATGGAAGT 1263
| |||||||| |||||||| || ||||| ||||||||||
Sbjct 1151 GTGGTGGCCGACACACTCTAGCAATTGTGGAATGGAAGT 1189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58773248035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5