BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02520.1
Length=1245
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477486 jgi|Araly1|477486|fgenesh2_kg.3__187__AT3G02520.1 1773 0.0
Ahg893515 jgi|Araly1|893515|Al_scaffold_0006_1511 793 0.0
> Ahg477486 jgi|Araly1|477486|fgenesh2_kg.3__187__AT3G02520.1
Length=1145
Score = 1773 bits (960), Expect = 0.0
Identities = 1091/1152 (95%), Gaps = 18/1152 (2%)
Strand=Plus/Plus
Query 4 TTTCGCGTCTCGACCTTCGAATTCGACAAATCCCTAATTCCAAAATCCTCTCGGATCT-A 62
||||||||||||| |||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 1 TTTCGCGTCTCGAGCTTCGAATTCGACAAATCCCTAATTCCAAAATCCTCTCGG-TTTGA 59
Query 63 AAAGAGTGTGTGATAACATAAGATGTCGTCTTCTCGGGAAGAGAATGTGTACTTAGCCAA 122
|| | | | |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AATGTTTTTTTGATAACAGAAGATGTCGTCTTCTCGGGAAGAGAATGTGTACTTAGCCAA 119
Query 123 GTTAGCTGAGCAAGCTGAACGTTATGAGGAAATGGTTGAGTTCATGGAGAAAGTTGCAAA 182
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 120 GTTAGCTGAGCAAGCTGAACGTTATGAGGAAATGGTTGAATTCATGGAGAAAGTTGCGAA 179
Query 183 GACTGTTGACACCGATGAGCTTACTGTCGAAGAGAGAAACCTCTTGTCTGTTGCTTACAA 242
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 180 GACTGTTGACACCGATGAGCTTACTGTCGAAGAGCGAAACCTCTTGTCTGTTGCGTACAA 239
Query 243 GAACGTCATTGGTGCTAGGAGAGCTTCCTGGAGGATCATATCTTCCATTGAACAGAAGGA 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GAACGTCATTGGTGCTAGGAGAGCTTCCTGGAGGATCATATCTTCCATTGAACAGAAGGA 299
Query 303 AGAAAGCAGAGGAAACGATGATCATGTTTCCATTATCAAGGACTACAGAGGAAAGATCGA 362
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 300 AGAAAGCAGAGGAAACGATGATCATGTTTCCATTATCAAGGACTACAGAGGGAAGATCGA 359
Query 363 AACTGAACTCAGCAAAATCTGTGATGGAATACTCAATCTTCTGGATTCTCACCTTGTTCC 422
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AACCGAACTCAGCAAAATCTGTGATGGAATACTCAATCTTCTGGATTCTCACCTTGTTCC 419
Query 423 CACTGCATCTTTGGCCGAGTCCAAAGTCTTTTACCTCAAAATGAAAGGAGATTACCACAG 482
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CACTGCATCTTTGGCTGAGTCCAAAGTCTTTTACCTCAAAATGAAAGGAGATTACCACAG 479
Query 483 GTACCTTGCTGAGTTTAAGACTGGAGCTGAGAGGAAAGAAGCTGCTGAGAGCACTCTGGT 542
|||||||||||||||||||||||| ||||||||||| ||| |||| ||||||||||||||
Sbjct 480 GTACCTTGCTGAGTTTAAGACTGGTGCTGAGAGGAAGGAATCTGCAGAGAGCACTCTGGT 539
Query 543 TGCTTACAAGTCAGCTCAGGATATTGCACTTGCTGATTTAGCTCCTACTCATCCGATTAG 602
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 TGCTTACAAGTCAGCTCAGGATATTGCACTTGCTGATTTAGCTCCTACTCACCCGATTAG 599
Query 603 ACTGGGACTTGCTCTTAACTTCTCTGTCTTCTACTACGAGATTCTCAACTCACCTGATCG 662
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ATTGGGACTTGCTCTTAACTTCTCTGTCTTCTACTACGAGATTCTCAACTCACCTGATCG 659
Query 663 TGCCTGCAGTCTCGCAAAACAGGCTTTTGATGAGGCCATTTCTGAGCTGGATACATTAGG 722
|||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 660 TGCCTGCAGTCTCGCAAAACAGGCTTTTGATGAGGCTATTTCTGAGCTCGACACATTAGG 719
Query 723 AGAAGAATCATACAAAGACAGTACGTTGATAATGCAACTTCTCCGTGACAATCTGACCCT 782
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 720 AGAAGAATCATACAAAGACAGTACACTGATAATGCAACTTCTCCGTGACAATCTGACCCT 779
Query 783 TTGGAACTCTGACATCAATGATGAGGCGGGCGGTGATGAGATCAAGGAGGCGTCAAAACA 842
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 780 ATGGAATTCTGACATCAATGATGAGGCGGGTGGTGATGAGATCAAGGAGGCGTCAAAACA 839
Query 843 TGAGCCGGAAGAGGGGAAACCAGCTGAGACAGGGCAGTGACCagagagagagggagagaC 902
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 840 TGAGCCGGAAGAAGGGAAACCAGCAGAGACAGGGCAGTGACCAGAGAGAGAGGGAGAGAC 899
Query 903 ATTTCTAAGTATGTATGGTATGGATTTTCCAAAAA-CATATGATATGATTAGGGGATTTG 961
|||||| ||||||||||||| |||||||||||||| |||||||| ||||| || |||||
Sbjct 900 ATTTCTGAGTATGTATGGTACGGATTTTCCAAAAAACATATGAT--GATTATGGTATTTG 957
Query 962 TAGAAGCAGAGAGAAAGATCTTTATTTGATTTTCTCCAAAAATCTCTGTTCCCttttttt 1021
|||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||
Sbjct 958 TAGAAGCAGAGAGAAAGATCATTATTTGATTTTCTCCAAAAAACTCTGTTCTCTTTTTTT 1017
Query 1022 tttATTGGGTTATTAAAGCTGTTTGAGTCTTTGGTTCC-TGCTTCGTTGCTTGTTAGTA- 1079
|||| |||||| ||||||||||| ||||||||| |||| | ||||||||||||||||||
Sbjct 1018 TTTACTGGGTT-TTAAAGCTGTT-GAGTCTTTGATTCCGT-CTTCGTTGCTTGTTAGTAA 1074
Query 1080 TT--TA----GGAAGTGAAGAAACAAAACTTTGAATTATTGCTTTCCATTCAACTCGTCA 1133
|| || ||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1075 TTAGTAATTAGGAAGTGAAGAAACAAAACTTAGAATTATTGCTTTGGATTCAACTCGTC- 1133
Query 1134 TAA-ATTATCAT 1144
||| ||||||||
Sbjct 1134 TAAGATTATCAT 1145
> Ahg893515 jgi|Araly1|893515|Al_scaffold_0006_1511
Length=795
Score = 793 bits (429), Expect = 0.0
Identities = 636/737 (86%), Gaps = 9/737 (1%)
Strand=Plus/Plus
Query 97 CGGGAAGAGAATGTGTACTTAGCCAAGTTAGCTGAGCAAGCTGAACGTTATGAGGAAATG 156
|||||||||||||||||||| ||||||||||| ||||| ||||| ||||| |||||||||
Sbjct 7 CGGGAAGAGAATGTGTACTTGGCCAAGTTAGCCGAGCAGGCTGAGCGTTACGAGGAAATG 66
Query 157 GTTGAGTTCATGGAGAAAGTTGCAAAGACTGTTGACACCGATGAGCTTACTGTCGAAGAG 216
||||||||||||||||||||||| ||||| || ||||| || || |||||||| ||||||
Sbjct 67 GTTGAGTTCATGGAGAAAGTTGCTAAGACCGTGGACACTGAGGAACTTACTGTTGAAGAG 126
Query 217 AGAAACCTCTTGTCTGTTGCTTACAAGAACGTCATTGGTGCTAGGAGAGCTTCCTGGAGG 276
|| || |||||||||||||| || |||||||| |||||||||||||| ||||| ||||||
Sbjct 127 AGGAATCTCTTGTCTGTTGCGTATAAGAACGTGATTGGTGCTAGGAGGGCTTCTTGGAGG 186
Query 277 ATCATATCTTCCATTGAACAGAAGGAAGAAAGCAGAGGAAAC-GATGATCATGTTTCCAT 335
|| || ||||||||||| ||||||||||| ||||| || ||| | |||||| ||||| ||
Sbjct 187 ATTATCTCTTCCATTGAGCAGAAGGAAGATAGCAGGGGTAACAG-TGATCACGTTTCGAT 245
Query 336 TATCAAGGACTACAGAGGAAAGATCGAAACTGAACTCAGCAAAATCTGTGATGGAATACT 395
||||||||| |||||||| ||||| |||||||| |||||||| || || ||||| || |
Sbjct 246 TATCAAGGATTACAGAGGCAAGATTGAAACTGAGCTCAGCAAGATTTGCGATGGCATTTT 305
Query 396 CAATCTTCTGGATTCTCACCTTGTTCCCACTGCATCTTTGGCCGAGTCCAAAGTCTTTTA 455
|| ||||| || |||| || |||| |||| || ||||| ||||||||||| |||||
Sbjct 306 GAACCTTCTCGAGGCTCATCTCATTCCTGCTGCTTCCTTGGCTGAGTCCAAAGTTTTTTA 365
Query 456 CCTCAAAATGAAAGGAGATTACCA-CAGGTACCTTGCTGAGTTTAAGACTGGAGCTGAGA 514
|||||| ||||| ||||||||||| | ||||||||||||| || |||||||| |||||||
Sbjct 366 CCTCAAGATGAAGGGAGATTACCATC-GGTACCTTGCTGAATTCAAGACTGGTGCTGAGA 424
Query 515 GGAAAGAAGCTGCTGAGAGCACTCTGGTTGCTTACAAGTCAGCTCAGGATATTGCACTTG 574
||||||||||||||||||| ||||| || || |||||||| |||||||||||||| ||||
Sbjct 425 GGAAAGAAGCTGCTGAGAGTACTCTTGTGGCCTACAAGTCTGCTCAGGATATTGCTCTTG 484
Query 575 CTGATTTAGCTCCTACTCATCCGATTAGACTGGGACTTGCTCTTAACTTCTCTGTCTTCT 634
|||| || ||||| ||||| ||||| |||||||| |||||||||||||||||||| ||||
Sbjct 485 CTGACTTGGCTCCCACTCACCCGATCAGACTGGGGCTTGCTCTTAACTTCTCTGTTTTCT 544
Query 635 ACTACGAGATTCTCAACTCACCTGATCGTGCCTGCAGTCTCGCAAAACAGGCTTTTGATG 694
|||| ||||||||||||||| |||||||||| || ||||||||||| |||||||||||||
Sbjct 545 ACTATGAGATTCTCAACTCATCTGATCGTGCATGTAGTCTCGCAAAGCAGGCTTTTGATG 604
Query 695 AGGCCATTTCTGAGCTGGATACATTAGGAGAAGAATCATACAAAGACAGTACGTTGATAA 754
|||| || |||||||| |||||||| ||||| ||||||||||| |||||||| ||||| |
Sbjct 605 AGGCAATCTCTGAGCTAGATACATTGGGAGAGGAATCATACAAGGACAGTACATTGATCA 664
Query 755 TGCAACTTCTCCGTGACAATCTGACCCTTTGGAACT-CTGACATCAATGATGAGGCGGGC 813
|||| ||||||||||| ||||| ||||| |||| || ||||| ||||||| || | ||
Sbjct 665 TGCAGCTTCTCCGTGATAATCTCACCCTCTGGA-CTTCTGACCTCAATGACGAAACTGG- 722
Query 814 GGTGATGAGATCAAGGA 830
|||||| ||||||||
Sbjct 723 --TGATGATATCAAGGA 737
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46509958740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5