BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02540.1
Length=1738
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477488 jgi|Araly1|477488|fgenesh2_kg.3__189__AT3G02540.1 2643 0.0
Ahg494129 jgi|Araly1|494129|fgenesh2_kg.7__3562__AT5G38470.1 375 4e-103
> Ahg477488 jgi|Araly1|477488|fgenesh2_kg.3__189__AT3G02540.1
Length=1670
Score = 2643 bits (1431), Expect = 0.0
Identities = 1571/1639 (96%), Gaps = 7/1639 (0%)
Strand=Plus/Plus
Query 31 GGAGATATCGAGGGAACGCAAAGGTAGGGGCCAGATTCTGTAGTACCTTCTTCGCCTACC 90
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 19 GGAGATATCGAGGGAACGCAAAGGTAGGGGCCAGATTCTGTAGTACCCTCTTCACCTACC 78
Query 91 TACTCTCTTTCCCGAATTTATTTGCCGGCGGTGATCAATCAGAACGGGATTTTAGCCTGA 150
||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||| ||
Sbjct 79 TACTCTCTTTCTCGAATTTATTTGCCGGCGGCGATCAATCCGAACGGGATTTTAGCCGGA 138
Query 151 GTAATCGGTCACTGGGAAGAGAATTTCGACGGTGAGAGAAGATGAAGATATTTGTGAAAA 210
||| ||||||||||||||| |||||| | |||||||||||||||||||||||||||||||
Sbjct 139 GTAGTCGGTCACTGGGAAGGGAATTTGGCCGGTGAGAGAAGATGAAGATATTTGTGAAAA 198
Query 211 CTCTCAAGGGGACTCACTTCGAGATCGAAGTAAAACCCGAGGATTCGGTTGTTGATGTGA 270
||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||
Sbjct 199 CTCTCAAGGGGACTCACTTTGAGATCGAAGTAAAACTCGAGGATTCGGTTGCTGATGTGA 258
Query 271 AGAAGAACATAGAGAGTGTGCAGGGCGCAGATGTGTATCCTGCTGCAAAACAGATGCTTA 330
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 259 AGAAGAACATAGAGACTGTGCAGGGCGCAGATGTATATCCTGCTGCAAAACAGATGCTTA 318
Query 331 TTCACCAAGGTAAAGTGCTTAAAGATGAGACAACTATTGAGGAAAACAAAGTTGCTGAGA 390
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 319 TTCACCAAGGTAAAGTTCTTAAAGATGAGACTACTATTGAGGAAAACAAAGTTGCTGAGA 378
Query 391 ACAGTTTTATTGTCATTATGATGAACAAGAGTAAACCTGCTTCAGCTGCAGCATCTAGTG 450
|||||||||||||| | ||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 379 ACAGTTTTATTGTCGTAATGATGAACAAGAGTAAACCTGCTTCAACTGGAGCATCTAGTG 438
Query 451 CATCTGCTGGCACATCGCAGGCCAAGTCGATACCTCCCTCAACATCACAGCCTTCAATTT 510
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 439 CATCTGCTGGCACAGCGCAGGCCAAGTCGACACCTCCCTCAACATCACAGCCTTCAATTT 498
Query 511 CCCCTCAGACTCCAGCTTCTGTATCAgcaccagtggcacctgcaccaacacgtccaccac 570
||||||||||||||||||||||| |||||||||||||||||||||| |||||| | ||||
Sbjct 499 CCCCTCAGACTCCAGCTTCTGTAGCAGCACCAGTGGCACCTGCACCGACACGTGCGCCAC 558
Query 571 cacctgcaccgacaccgacacctgcacctgTAGCTGCAACTGAAACTGTGACTACCCCTA 630
|||||| | | ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 559 CACCTG---C--C-CCGACACCTGCACCTGTAGCTGCAACTGAAACTGTGACTACACCTA 612
Query 631 TACCTGAACCTGTACCTGCTACTATATCATCAAGCACTCCTGCACCAGACTCAGCTCCTG 690
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 613 TACCTGAACCTGTACCTGCTACTATACCATCAAGCACTCCTGCACCAGACTCAGCTCCTG 672
Query 691 TGGGAAGTCAAGGTGATGTTTACGGACAAGCAGCATCAAATCTAGCCGCTGGAAGTAATT 750
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 CGGGAAGTCAAGGTGATGTTTACGGACAAGCAGCATCAAATCTAGCCGCTGGAAGTAATT 732
Query 751 TAGAGAGTACCATTCAGCAGATTCTTGACATGGGTGGAGGAACCTGGGATCGTGAGACTG 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 733 TAGAGAGTACCATTCAGCAGATTCTTGACATGGGTGGAGGAACCTGGGATCGTGACACTG 792
Query 811 TTGTCCTTGCACTTCGTGCTGCATTTAACAACCCTGAAAGAGCTGTGGAATATCTTTATA 870
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 793 TTGTCCGTGCACTTCGTGCTGCATTTAACAACCCCGAAAGAGCTGTGGAATATCTTTATA 852
Query 871 CTGGGATCCCTGAGCAAGCTGAAGTTCCACCAGTTGCCCGTCCTCCAGCTAGTGCCGGAC 930
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 853 CTGGGATCCCTGAGCAAGCTGAAGTTCCACCAGTTGCCCGTGCTCCAGCTAGTGTCGGAC 912
Query 931 AGCCTGCAAATCCTCCAGCACAGACTCAACAACCTGCAGCAGCACCCGCAAGTGGTCCTA 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 AGCCTGCAAATCCTCCAGCACAGACTCAACAACCTGCAGCAGCACCCGCAAGTGGTCCTA 972
Query 991 ATGCAAATCCGTTAGATCTCTTCCCACAGGGCTTGCCAAATGTTGGAGGAAATCCTGGTG 1050
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 ATGCAAATCCGCTAGACCTCTTCCCACAGGGCTTGCCAAATGTTGGAGGAAATCCTGGTG 1032
Query 1051 CTGGAACACTTGACTTCTTGCGCAACAGCCAACAGTTCCAAGCTCTGCGAGCAATGGTGC 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 CTGGAACACTTGACTTCTTGCGCAACAGCCAACAGTTCCAAGCTCTGCGAGCAATGGTGC 1092
Query 1111 AAGCAAACCCTCAAGTTCTGCAGCCCATGCTTCAGGAACTGGGAAAACAGAACCCAAACT 1170
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1093 AAGCAAACCCTCAAGTTCTGCAGCCCATGCTTCAGGAACTGGGAAAGCAGAACCCAAACT 1152
Query 1171 TGATGCGGTTGATTCAAGACCACCAAGCTGACTTCTTACGCTTAATCAATGAACCCGTTG 1230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 TGATGCGGTTGATTCAAGACCACCAAGCTGACTTCTTACGCTTAATCAATGAACCCGTTG 1212
Query 1231 AAGGAGGGGGAGAAAGTGGCAACCTCCTTGGCCAAATGGCGGCGGGAATGCCACAGCCAC 1290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 AAGGAGGGGGAGAAAGTGGCAACCTCCTTGGCCAAATGGCGGCGGGAATGCCACAGCCAC 1272
Query 1291 AGGCGATTCAAGTCACACATGAGGAACGTGAAGCCATTGAACGGCTTGAAGCGATGGGAT 1350
|||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1273 AGGCGATTCAAGTCACACCTGAGGAACGCGAAGCAATTGAACGGCTTGAAGCGATGGGAT 1332
Query 1351 TTGAGAGAGCATTGGTGTTGGAAGTGTTCTTTGCGTGCAACAAGAATGAAGAGTTGGCTG 1410
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TTGACAGAGCATTGGTGTTGGAAGTGTTCTTTGCGTGCAACAAGAATGAAGAGTTGGCTG 1392
Query 1411 CAAACTATCTTCTAGATCACATGCATGAATTCGAGGAATAAGCTTCTTCAGATTACTTTA 1470
|||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||
Sbjct 1393 CAAACTATCTTCTAGATCACATGCATGAGTTCGAGGAATAACCTTCTTCAGTTTACTTTA 1452
Query 1471 CCTACTCTCTATCTTTCGCATTGGTCCATATGTTTTAGCTATATATGTGTGGGATGCCAA 1530
||||||||||||||||| ||||||||||||||| ||| |||||||| |||||| ||||||
Sbjct 1453 CCTACTCTCTATCTTTCCCATTGGTCCATATGTGTTACCTATATATTTGTGGG-TGCCAA 1511
Query 1531 ATCCATGACCTCGTCACTTTGTCCATGTTCATGGCTCAGTTCTCAGTTTAAAATGAAGTT 1590
||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1512 GTCCATGATCTCGTCACTTTGTCCATGTTCATGGCTCAGTTCTCGGTTTAAAATGGAGTT 1571
Query 1591 TGTCATGTGTTCTTTCTTTGTATTGTCGTTAGTCCTTACAAAATATCTTGTTCCAGTTAT 1650
| |||| || |||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1572 TATCATCTGCTCTTTCTTTGTATTGTCGTTAGTCCTTACAAAATCTCCCGTTCCAGTTAT 1631
Query 1651 TTTTGTTGAATTGGGGACA 1669
|||||| |||||||||||
Sbjct 1632 TTTTGTCAAATTGGGGACA 1650
> Ahg494129 jgi|Araly1|494129|fgenesh2_kg.7__3562__AT5G38470.1
Length=1382
Score = 375 bits (203), Expect = 4e-103
Identities = 583/761 (77%), Gaps = 48/761 (6%)
Strand=Plus/Plus
Query 705 GATGTTTACGGACAAGCAGCATCAAATCTAGCCGCTGGAAGTAATTTAGAGAGTACCATT 764
||||| || || |||||||| ||||| || | ||||||| || | ||||| || ||
Sbjct 451 GATGTGTATGGTCAAGCAGCGTCAAACCTTGTTGCTGGAACTACTCTAGAGTCCACTGTT 510
Query 765 CAGCAGATTCTTGACATGGGTGGAGGAACCTGGGATCGTGAGACTGTTGTCCTTGCACTT 824
||||| |||||||||||||||||||| | ||||| ||||| |||||||| | ||| ||
Sbjct 511 CAGCAAATTCTTGACATGGGTGGAGGTAGTTGGGACCGTGACACTGTTGTTCGTGCTCTG 570
Query 825 CGTGCTGCATTTAACAACCCTGAAAGAGCTGTGGAATATCTTTA-TACTGGGATCCCTGA 883
| ||||| || ||||| ||||||||||| || |||||||| || | | || |||||||
Sbjct 571 AGAGCTGCCTTCAACAATCCTGAAAGAGCCGTTGAATATCTGTACT-CAGGTATCCCTGC 629
Query 884 GCAAGCTGAAGTTCCACCAGTTGC-C-CGTCCTCCAGCTAGTGCCGGACAGCCTGCAAAT 941
||||||||| | || |||||||| | | || ||| ||| || | |||||| ||||||
Sbjct 630 TCAAGCTGAAATCCCGCCAGTTGCTCAAG-CC-CCATCTACTGGTGAACAGCCAGCAAAT 687
Query 942 CCTCCAGCACAGA-CTCAACAACCTGCAGCAGCACCCGCAA---GTGGTCCTAATGCAAA 997
|||| |||||| | | |||||| | || | | | | |||| ||||||| || |||||
Sbjct 688 CCTCAAGCACA-ACCCCAACAAGCAGCTCCGGTAGCTGCAACTGGTGGTCCAAACGCAAA 746
Query 998 TCCGTTAGATCTCTTCCCACAGGGCTTGCCAAATGTTGGA-GGAAATCCTGGTGCTGG-A 1055
||| ||| | || ||||| |||||| |||| || || | | |||| ||||| |
Sbjct 747 TCCATTAAACCTGTTCCCCCAGGGCATGCCCGCTG-CAGATGCTGCTGCTGGAGCTGGTA 805
Query 1056 ACACTTGACTTCTTGCGCAACAGCCAACAGTTCCAAG-CTCTGCGAGCAATGGTGCAAGC 1114
| ||||| ||| |||| ||||| || |||||||||| || ||||||| ||||| |||||
Sbjct 806 A-TCTTGATTTCCTGCGTAACAGTCAGCAGTTCCAAGCCT-TGCGAGCTATGGTACAAGC 863
Query 1115 AAACCCTCAAGTTCTGCAGCCCATGCTTCAGGAACTGGGAAAACAGAACCC-AAACTTGA 1173
|||||| ||| |||| ||||| ||||||||||| || || ||||| ||||| | ||||
Sbjct 864 AAACCCACAAATTCTACAGCCTATGCTTCAGGAGCTCGGTAAACAAAACCCGCAGCTTG- 922
Query 1174 TGCGGTTGATTCAAGACCACCAAGCTGACTTCTTACGCTTAATCAATGAACCCGTTGAAG 1233
|||| | |||||||| ||||| ||||||||| ||||||| || ||||| ||||| || |
Sbjct 923 TGCGACTAATTCAAGAGCACCAGGCTGACTTCCTACGCTTGATAAATGAGCCCGTCGAGG 982
Query 1234 GAGGGGGAGAAAG---TGGCAACCTCCTTGGCCAAATGGCGGCGGGAATGCCACAGCCAC 1290
|| | ||||| | ||| || | |||| || || || |||| | || ||
Sbjct 983 GA-GAAGAGAATGTTATGG-AA-C-AGTTGG---AA--GCAGC---AATG-C-CA--CA- 1025
Query 1291 AGGC-GATTCA-AGTCACACATGAGGAACGTGAAGCCATTGAACGGCTTGAAGCGATGGG 1348
| || | || | ||| |||| ||| || ||||||||||||||||||||||||||||||||
Sbjct 1026 A-GCTG-TT-ACAGTTACACCTGAAGAGCGTGAAGCCATTGAACGGCTTGAAGCGATGGG 1082
Query 1349 ATTTGAGAGAGC-ATTGGTGTTGGAAGTGTTCTTTGCGTGCAACAAGAATGAAGAG-TTG 1406
||||| | || || ||| || ||||||||||||||||| |||||||||||||| |||
Sbjct 1083 GTTTGATCGTGCGAT-GGTCTTAGAAGTGTTCTTTGCGTGTAACAAGAATGAAGAACTTG 1141
Query 1407 GCTGCAAACTATCTTCTAGATCACATGCATGAATTCGAGGA 1447
| || || || |||||||||||||||||||| || |||||
Sbjct 1142 -CAGCGAATTACCTTCTAGATCACATGCATGAGTTTGAGGA 1181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65210499440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5