BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02550.1
Length=1382
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477490 jgi|Araly1|477490|fgenesh2_kg.3__191__AT3G02550.1 1753 0.0
> Ahg477490 jgi|Araly1|477490|fgenesh2_kg.3__191__AT3G02550.1
Length=1346
Score = 1753 bits (949), Expect = 0.0
Identities = 1134/1222 (93%), Gaps = 18/1222 (1%)
Strand=Plus/Plus
Query 1 AAAACAGCGGCGGTTCTGGGAAAATAA-AGGAAGGATTTTGTAATTAAAAGACAAAACAA 59
|||||||||||||||||||||||| || ||||||||||| | ||||||||||||||||||
Sbjct 1 AAAACAGCGGCGGTTCTGGGAAAAAAACAGGAAGGATTTCGCAATTAAAAGACAAAACAA 60
Query 60 CCCTTGTCTTTAGAGAAAAACAGCTCTTCTTATCTTGTTTTCTTTGTCTTCTG-C--C-T 115
||||||||||||||| |||||||||||||| |||||||||||||||||||||| | | |
Sbjct 61 CCCTTGTCTTTAGAGGAAAACAGCTCTTCTCATCTTGTTTTCTTTGTCTTCTGCCTTCTT 120
Query 116 TCTTCCCTTGGTTTTATAATCTCTCTCCGCTTCCCCCAAAAATCCAGGGGCTTCTTACAC 175
||||||||||||||||||| | ||||||| ||||||| |||| |||||||||||||||||
Sbjct 121 TCTTCCCTTGGTTTTATAA-C-CTCTCCGATTCCCCC-AAAACCCAGGGGCTTCTTACAC 177
Query 176 GCACACAATCCTTTAAAGCTATCGTCTTTCTTATATAA-TCAGTGAATCTTCATT-AACA 233
|||||||||||||||||||||| ||||||||||||||| | ||||||||||| || ||
Sbjct 178 GCACACAATCCTTTAAAGCTATTGTCTTTCTTATATAAGT-AGTGAATCTTC-TTCTTCA 235
Query 234 CCTCCCACAAAATCTCAGAAATAACTTTCACAACAGAGTCAAAGAGTTCCAAATCGTTTG 293
||||||||||||||| ||||||||||||| ||||| | |||| |||| ||||||| |||
Sbjct 236 GCTCCCACAAAATCTCCGAAATAACTTTCAAAACAGGGACAAAAAGTTTCAAATCGCTTG 295
Query 294 TTTGTATTTTGTACGATCAAAGTTGTTGGTACTTGTAAGATAATCGAAACCAAAGATGCG 353
||||| |||||||||||| ||||||||| ||||||||||| |||||||| ||||||||||
Sbjct 296 TTTGTGTTTTGTACGATC-AAGTTGTTGTTACTTGTAAGAAAATCGAAATCAAAGATGCG 354
Query 354 GATGAGCTGTAATGGATGCAGAGTTCTTCGGAAAGGGTGTAGTGAGGATTGTAGTATAAG 413
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 355 GATGAGCTGTAATGGATGTAGAGTTCTTCGAAAAGGGTGTAGTGAGGATTGTAGCATAAG 414
Query 414 GCCGTGTTTGGCTTGGATCAAATCGCCTGAAGCGCAAGCTAACGCAACTGTCTTTCTCGC 473
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 415 ACCGTGTTTGGCTTGGATCAAATCGCCTGAAGCGCAAGCTAATGCAACTGTGTTTCTCGC 474
Query 474 CAAGTTCTATGGCCGTGCTGGACTCATGAACCTCATCAACGCCGGTCCCAATCACCTTCG 533
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 475 CAAGTTCTATGGCCGTGCTGGACTCATGAATCTCATCAACGCCGGTCCCGATCACCTTCG 534
Query 534 TCCTGGGATTTTCCGATCGTTGTTGCACGAAGCTTGTGGGAGGATTGTGAATCCGATCTA 593
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TCCTGGAATTTTCCGATCGTTGTTGCACGAAGCTTGTGGGAGGATTGTGAATCCGATCTA 594
Query 594 TGGTTCGGTGGGTTTGTTGTGGTCGGGGAATTGGCAGCTTTGTCAAGACGCCGTGGAGGC 653
||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 595 TGGCTCGGTTGGTTTGTTGTGGTCGGGGAATTGGCAGCTTTGTCAAGACGCCGTTGAGGC 654
Query 654 TGTGATGAAAGGAGAACCGGTCAAAGAGATCGCCACAGACGCTGCGACGATCGGCCAAGG 713
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TGTGATGAAAGGAGAACCGATCAAAGAGATCGCCACAGACGCTGCGACGATCGGCCAAGG 714
Query 714 TCCGCCTCTTAAGATCTACGACATCCGACATATCTCCAAGGATGATAACTCTGCCGCCGC 773
|||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 715 TCCGCCGCTTAAGATCTACGATATCCGACATATCTCCAAGGATGATAACTCCGCCGCCGC 774
Query 774 -G-G-CTACTGGCTCAACCGATTTGAAACTTGCGAAAACTCGCCGTGCTAAGCGGGTCTC 830
| | |||||||||||||||||||||||| |||| ||||||||| ||||||||||| ||
Sbjct 775 TGCGGCTACTGGCTCAACCGATTTGAAACGGGCGAGAACTCGCCGGGCTAAGCGGGTATC 834
Query 831 CACCGTCGCGATACAGGCGGAATCGGAGGGAAAGTCTGACGAGGCTAGTCACGATTCGTC 890
||||||| || |||||||||||||||||||||||| | ||| ||||||||||| |||||
Sbjct 835 TACCGTCGAGAAACAGGCGGAATCGGAGGGAAAGTCCGGCGAAGCTAGTCACGAGTCGTC 894
Query 891 GTTGAGTCATCAGTCTGAAATAGTGGCTGCTCATGAAGGAGAGAGCAAGGAATCCGAGAG 950
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 895 TTTGAGTCATCAGTCTGAAATAGTAGCTGCTCATGAAGGAGAGAGCAAGGAATCGGAGAG 954
Query 951 CAATGTCTCTGAGGTTTTGGCATTCTCGCCTCCGGCTGTGAAGGGCTCCGGCGAGATAAA 1010
||||||||| |||||||||||||| ||||| ||| ||||| |||||||||||||||||||
Sbjct 955 CAATGTCTCGGAGGTTTTGGCATTTTCGCCACCGACTGTGCAGGGCTCCGGCGAGATAAA 1014
Query 1011 GCTTGACCTAACTTTAAGGCTCGAACCGGTGTCACGTGCGTATCATGTGGTACCTGTTAA 1070
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1015 GCTTGACCTAACTTTAGGGCTCGAGCCGGTGTCACGTGCGTATCATGTGGTACCTGTAAA 1074
Query 1071 GAAGAGAAGGATCGGCGTGTTTGGCACGTGTCAGAAGGAGAGCACGTGTAAGACTGAGCT 1130
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 GAAGAGAAGAATCGGCGTGTTTGGCACGTGTCAGAAGGAGAGCACGTGTAAGACTGAGCT 1134
Query 1131 TATGCTCTAAGCTCCGTTTTAGCTATAC-TCAGAAGTTTTGCCCCCATCAGCTCTATTCG 1189
||||| | ||||||||| ||||| | | |||||||||||||||| ||||||||||||||
Sbjct 1135 AATGCTTTGAGCTCCGTTGTAGCT-TGCCTCAGAAGTTTTGCCCCAATCAGCTCTATTCG 1193
Query 1190 GCTCGGCTCTGATGATCTTCAA 1211
|||||||| |||||||| ||||
Sbjct 1194 GCTCGGCTATGATGATCGTCAA 1215
Score = 158 bits (85), Expect = 1e-37
Identities = 118/133 (89%), Gaps = 6/133 (5%)
Strand=Plus/Plus
Query 1249 ATTTCCCCCTTTAATGTTCACTTTCCATTTGTGACAAAAGAATAGAGTATATGTACAAAA 1308
|||||||| |||||| |||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1215 ATTTCCCCTTTTAATTTTCACTTTCC-GTTGTGACCAAAGAATAGAGTATATGTACAAAC 1273
Query 1309 TTATTTACAGAGATTAATTCAAGAATTGGC-T-GA-GATATTA-TCTATTTT-TTAACGA 1363
|||||||||||||||||||||||||||||| | || | ||||| | | |||| || ||||
Sbjct 1274 TTATTTACAGAGATTAATTCAAGAATTGGCCTAGATGTTATTAATTTCTTTTCTTTACGA 1333
Query 1364 ATAAAAGCAAAAA 1376
|||||||||||||
Sbjct 1334 ATAAAAGCAAAAA 1346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51732798369
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5