BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02560.1
Length=910
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477492 jgi|Araly1|477492|fgenesh2_kg.3__193__AT3G02560.1 1066 0.0
Ahg488462 jgi|Araly1|488462|fgenesh2_kg.6__1596__AT5G16130.1 627 6e-179
> Ahg477492 jgi|Araly1|477492|fgenesh2_kg.3__193__AT3G02560.1
Length=696
Score = 1066 bits (577), Expect = 0.0
Identities = 660/699 (94%), Gaps = 9/699 (1%)
Strand=Plus/Plus
Query 80 CTTCTAAGGTTCTTCGTCGTTC-TTATTGATCTGTGAAGATGTATTCGGGTCAGAACAAG 138
||| |||||||||| ||||||| ||| |||||||| ||||||||||| ||||||||||||
Sbjct 1 CTTGTAAGGTTCTTGGTCGTTCTTTACTGATCTGTCAAGATGTATTCTGGTCAGAACAAG 60
Query 139 ATCCACAAGGATAAGGGTGTTGCACCAACAGAGTTTGAAGAGCAAGTTACTCAGGCT-TT 197
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||
Sbjct 61 ATCCACAAGGATAAGGGTGTGGAACCAACAGAGTTTGAAGAGCAAGTTACTCAGGCTCTT 120
Query 198 GTTTGACTTGGAGAACACCAACCAGGAGTTGAAAAGCGAGTTGAAAGATCTCTACATTAA 257
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 -TTTGACTTGGAGAACACCAACCAGGAGTTGAAAAGCGAGTTGAAAGATCTCTACATTAA 179
Query 258 CCAAGCTGTTCAGATGGATATTTCTGGCAACCGCAAAGCTGTTGTGATCTACGTTCCATT 317
|||||| ||||| |||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 180 CCAAGCAGTTCATATGGATATTTCTAGCAACCGCAAAGCTGTTGTCATCTACGTTCCATT 239
Query 318 CAGGCTGAGGAAAGCTTTCCGCAAGATTCATCTTCGTCTGGTCAGAGAGCTTGAGAAGAA 377
||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 240 CAGACTGAGGAAAGCTTTCCGCAAGATTCATCTCCGTCTTGTCAGAGAGCTTGAGAAGAA 299
Query 378 GTTCAGTGGAAAAGATGTGATCTTTGTTGCTACCAGAAGAATCATGCG-CCCACCAAAGA 436
|||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||
Sbjct 300 GTTCAGTGGAAAAGATGTTATCTTTGTTGCTACCAGAAGAATCATGCGTCCC-CCAAAGA 358
Query 437 AAGGCTCAGCTGTTCAGAGACCACGCAACAGAACTCTTACTTCTGTCCATGAAGCCATGC 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AAGGCTCAGCTGTTCAGAGACCACGCAACAGAACTCTTACTTCTGTCCATGAAGCCATGC 418
Query 497 TCGAGGATGTCGCTTACCCTGCTGAGATTGTAGGAAAGAGAACCAGATACCGTCTTGATG 556
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 419 TCGAGGATGTCGCTTACCCTGCTGAGATTGTAGGGAAGCGAACCAGATACCGTCTTGATG 478
Query 557 GCACCAAGATCATGAAGGTATTTTTGGATAGTAAGCTA-AAGAACGACACTGAGTACAAG 615
|||||||||||| |||||| | |||||| | ||||| | |||||||||||||||||||||
Sbjct 479 GCACCAAGATCACGAAGGTCTATTTGGACACTAAGC-AGAAGAACGACACTGAGTACAAG 537
Query 616 CTGGAGACAATGGTGGGTGTGTACAGGAAACTTACAGGGAAAGATGTAGTTTTCGAGTAC 675
|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 538 CTTGAGACAATGGTGGGTGTGTACAGGAAACTTACAGGGAGGGATGTAGTTTTCGAGTAC 597
Query 676 CCAGTCATAGAAGCTTGAAGAGATGAATGTTTGTTTCATTCTTTTTTGTCGGATAGAGAG 735
||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||
Sbjct 598 CCAGTCATAGAAGCTTGAAGAGATGGATGGTTGTTTTATTCTTTTTTGTCGGATAGAGAG 657
Query 736 --CTTTTGATTCTGTTTGGGAGTAAAACTCTTTGCAAAG 772
|||||||||||||||||||||| ||||||||| ||||
Sbjct 658 AGCTTTTGATTCTGTTTGGGAGTATAACTCTTTGAAAAG 696
> Ahg488462 jgi|Araly1|488462|fgenesh2_kg.6__1596__AT5G16130.1
Length=914
Score = 627 bits (339), Expect = 6e-179
Identities = 517/602 (86%), Gaps = 15/602 (2%)
Strand=Plus/Plus
Query 107 GATCTGTGAAGATGTAT-TCGGGTCAGAACAAGATCCACAAGGATAAGGGTGTTGCA-CC 164
|||| |||||||||| | || | ||||||||||||| | ||||| ||| || || | ||
Sbjct 119 GATCGGTGAAGATGT-TCTCCGCTCAGAACAAGATCAAGAAGGACAAGAATGCTG-AGCC 176
Query 165 AACAGAGTTTGAAGAGCAAGTTACTCAGGCTTTGTTTGACTTGGAGAACACCAACCAGGA 224
|||||| | ||| ||||||||| |||||||||||||||| ||||||||||| ||||||||
Sbjct 177 AACAGAATGTGAGGAGCAAGTTGCTCAGGCTTTGTTTGATTTGGAGAACACTAACCAGGA 236
Query 225 GTTGAAAAGCGAGTTGAAAGATCTCTACATTAACCAAGCTGTTCAGATGGATATTTCTGG 284
| |||||||||||||||||||||||||||| |||||||||||||| |||||||| || ||
Sbjct 237 GCTGAAAAGCGAGTTGAAAGATCTCTACATCAACCAAGCTGTTCAAATGGATATCTCCGG 296
Query 285 CAACCGCAAAGCTGTTGTGATCTACGTTCCATTCAGGCTGAGGAAAGCTTTCCGCAAGAT 344
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 297 AAACCGCAAAGCTGTTGTGATTTACGTTCCATTCAGATTGAGGAAAGCTTTCCGCAAGAT 356
Query 345 TCATCTTCGTCTGGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAAGATGTGATCTTTGT 404
||||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 357 TCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTTAGTGGAAAGGATGTCATCTTTGT 416
Query 405 TGCTACCAGAAGAATCATGCGCCCACCAAAGAAAGGCT-CAGCTGTTCAGAGACCACGCA 463
| | || ||||| |||||||| || || ||||| || | | ||||||||||| ||||| |
Sbjct 417 TACCACAAGAAGGATCATGCGTCCTCCTAAGAAGGG-TGCTGCTGTTCAGAGGCCACGTA 475
Query 464 ACAGAACTCTTACTTCTGTCCATGAAGCCATGCTCGAGGATGTCGCTTACCCTGCTGAGA 523
||||||||||||| ||||| |||||||| ||||| || ||||| |||| ||| |||||||
Sbjct 476 ACAGAACTCTTACCTCTGTTCATGAAGCTATGCTTGAAGATGTTGCTTTCCCCGCTGAGA 535
Query 524 TTGTAGGAAAGAGAAC-CAGATACCGTCTTGATGGCACCAAGATCATGAAGGTATTTTTG 582
|||| |||||| | || | | |||||||||||||| |||||||||||||||| | ||||
Sbjct 536 TTGTTGGAAAGCGTACTCGG-TACCGTCTTGATGGTTCCAAGATCATGAAGGTCTATTTG 594
Query 583 GATAGT-AAGCTAAAGAACGACACTGAGTACAAGCTGGAGACAATGGTGGGTGTGTACAG 641
||| | ||| ||||||| ||||||| |||||||| ||||| ||||||||||||||| |
Sbjct 595 GAT-GCCAAGGAAAAGAACAACACTGAATACAAGCTCGAGACTATGGTGGGTGTGTACCG 653
Query 642 GAAACTTACAGGGAAAGATGTAGTTTTCGAGTACCCAGTCATAGAAGCTTGAA-GA-GAT 699
|||||||| || |||||||| ||||| |||||||||||| |||||||||| || |||
Sbjct 654 TAAACTTACCGGCAAAGATGTCGTTTTTGAGTACCCAGTC---GAAGCTTGAAAGAAGAT 710
Query 700 GA 701
||
Sbjct 711 GA 712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33738781545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5