BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02570.1
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477494 jgi|Araly1|477494|fgenesh2_kg.3__195__AT3G02570.1 2283 0.0
> Ahg477494 jgi|Araly1|477494|fgenesh2_kg.3__195__AT3G02570.1
Length=1491
Score = 2283 bits (1236), Expect = 0.0
Identities = 1399/1475 (95%), Gaps = 22/1475 (1%)
Strand=Plus/Plus
Query 1 GTAAAGAGAAAAGCTTTGAGTCTTCC-ATTGACATGGGCGCTTAGCTTA---TGCTTGAG 56
|||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||
Sbjct 1 GTAAAGAGAAAAGCTTTGAGTCTTCCAATTGACATGGGCGCTTAGCTTATTCTACTTGAG 60
Query 57 ATATTTTGTTTTTACCTCCGAGAAACGGATTTAGATTCGTAATCGTGAGTTTTTTGGTGT 116
||| || | ||| ||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 61 ATA--TT-TATTTCCCTCCGAGACACGGATTTAGATTCGTAATCGTGAG--TTTTGGTGT 115
Query 117 AATGGAGATCGCTACTGTCGTAAAGGCTAATGGCGGTTGTGAAGCGGATCGACGACGGCT 176
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 116 AATGGAGATCGCTACTGTCGTTAAGGCTAATGGCGGTTGTGAAGCGGATCGACGACGGCT 175
Query 177 TCGCCGATTGAGATGCTCTGTTAAGGATTACGATTGGGGCAAAATTGGATCGGATTCACT 236
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 176 TCGCCGATTGAGATGCTCCGTTAAGGATTACGATTGGGGCAAAATTGGATCGGATTCACT 235
Query 237 CGTTTACAGGGTTTATGCGGCGAATTCAGATTACGAGATCGATCCTACACGACCTTACGC 296
||||||||||||||||||||| || || ||| || |||||||||||||||||||||||||
Sbjct 236 CGTTTACAGGGTTTATGCGGCTAACTCTGATGACCAGATCGATCCTACACGACCTTACGC 295
Query 297 CGAGCTATGGATGGGGACTCACGAGTCTGGTCCGAGTTACTTGGAGGATGCTGATGGATC 356
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 296 CGAGCTTTGGATGGGGACTCACGAGTCCGGTCCGAGTTACTTGGAGGATGCTGATGGATC 355
Query 357 CAATGGCGTGACCCTTAGATCCTGGATCACCGAAAACCCTAAATCTCTTGGAAATAGGGT 416
||| ||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 356 CAACGGCGTTACCCTTAGATCGTGGATCACCGAAAACCCTAAATCTCTTGGAGATAGGGT 415
Query 417 TTTGGAGAAATGGGGTTGCGATCTCCCCTTTCTGTTCAAGGTGTTGTCGGTGGCAAGGCC 476
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 416 TTTGGAGAAATGGGGTTGCGATCTCCCATTTCTGTTCAAGGTGTTGTCGGTGGCAAGGCC 475
Query 477 GTTGTCGATTCAAGCACATCCAGATAAGAAATTAGCAAAGAAAATGCACAAAGCTCATCC 536
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 476 CTTGTCGATTCAAGCACATCCGGACAAGAAATTAGCAAAGAAAATGCACAAAGCTCATCC 535
Query 537 TAATCTTTATAAAGACGACAATCACAAACCAGAGATGGCTTTGGCCTATACTCAATTCGA 596
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TAATCTTTATAAAGATGACAATCACAAACCAGAGATGGCTTTGGCCTATACTCAATTCGA 595
Query 597 GGCTCTCTGTGGCTTTATACCTCTTCAGGAGCTTAAGAGTGTCATTCGAGCTATTCCGGA 656
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 596 GGCTCTGTGTGGCTTTATACCTCTTCAGGAGCTTAAGAGTGTCATTCAAGCTATTCCGGA 655
Query 657 GATTGAAGAACTTGTTGGGAGTGAAGAAGCAAACCAAGTTTTCTGTATCACTGAACATGA 716
|||||| |||||||||||||||||||||| ||||||||||||||| |||| |||||||||
Sbjct 656 GATTGAGGAACTTGTTGGGAGTGAAGAAGTAAACCAAGTTTTCTGCATCAGTGAACATGA 715
Query 717 TGAGGAAAAAGTGAAATCTGTTGTCCGAACAATCTTCACCCTGCTAATGTCTGCTGACGC 776
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 716 TGAGGAAAAAGTGAAATCTGTTGTCCGAACAATCTTCACCCTGCTAATGTCTGCAGA-TC 774
Query 777 C-GATACAACAAAGAAAATTGTATCCAAATTAAAACGCCGACTGCATATGGAGAGTCAGG 835
| ||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||
Sbjct 775 CAGATACAACAAAGAAAATCGTATCCAAACTAAAACGCCGTCTGCATATGGAGAGTCAGG 834
Query 836 AACGCCAATTGACAGACAAGGAACGGCTGGTTTTGAAGCTAGAGAAGCAATATCCAAATG 895
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 AACGCCAACTGACAGACAAGGAACGGCTGGTTTTGAAGCTAGAGAAGCAATATCCAAATG 894
Query 896 ATATTGGAGTGATATCTGCATTCTTCTTCAACTATGTGAAGCTCAATCCTGGCGAAGCCT 955
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 895 ATATTGGAGTCATATCTGCTTTCTTCTTCAACTATGTGAAGCTCAATCCTGGCGAAGCCT 954
Query 956 TGTATCTTGGTGCAAACGAGCCCCACGCATACTTATTCGGTGAGTGCCTTGAGGTCATGG 1015
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 TGTACCTCGGTGCAAACGAGCCCCACGCATACTTATTCGGTGAGTGCCTTGAGGTCATGG 1014
Query 1016 CGACTTCAGACAATGTAGTACGAGCTGGCCTCACTTCCAAGCC-TCTGGATATTCAAACA 1074
||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||
Sbjct 1015 CGACTTCAGACAATGTAGTACGAGCCGGCCTCACTTCCAAGCCGT-TGGATATTCAAACA 1073
Query 1075 CTTTGTTCAATGCTCTCTTATAAACTGGGATATCCGGAAATCCTGAAGGGAACAAGGATT 1134
|||||||| |||||||| |||| ||||||||||||||||||||| |||||| ||||||||
Sbjct 1074 CTTTGTTCCATGCTCTCATATACACTGGGATATCCGGAAATCCTAAAGGGATCAAGGATT 1133
Query 1135 CGACCATACATAACAAGATACCTGCCGCCTTTCGAAGAGTTTGAAGTTGATCTGTGTGAT 1194
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1134 CGACCATACATCACAAGATACCTCCCGCCTTTCGAAGAGTTTGAAGTTGATCTGTGTGAT 1193
Query 1195 CTTCCCAGTGGAGCCTCGACGGTGTTTCCCTCTGTTCCAGGCCCTTCTCTTCTGCTTGTA 1254
||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1194 CTTCCCAGTGGTGCCTCGACAGTGTTTCCATCTGTTCCAGGCCCTTCTCTTCTGCTTGTA 1253
Query 1255 CTCCAAGGTGAAGGAAGAATGTCTACAGAAGCATCAGCCGATGGGATTTCAATGGGAGAT 1314
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1254 CTCCAAGGTGAAGGAAGAATGTCTACAGAAGCATCAGCAGATGGGATTTCAATGGGAGAT 1313
Query 1315 GTTTTATTTGTTCCTGCAGATACCGAGATTCACTTGAGGTCTTCATCTGACTTGAAGTTG 1374
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1314 GTTTTATTTGTGCCTGCAGATACCGAGATTCACTTGAGGTCATCATCTGACTTGAAGTTG 1373
Query 1375 TACAGAGCAGGAATCAACAGTAGGTTTTTGTTTCCTCTATAGTCAAAACTACACA--GTA 1432
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||
Sbjct 1374 TACAGAGCAGGAATCAACAGTAGGTTTTTGTATCCTCTATAGTCAAA-CTACACACAGTA 1432
Query 1433 CACAA-A--TGTTTGCTTTT-T--CAGTTATTGTA 1461
||||| | |||||| |||| | |||||||||||
Sbjct 1433 CACAACACATGTTTGTTTTTCTTTCAGTTATTGTA 1467
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57401999215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5