BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02580.1
Length=1171
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477495 jgi|Araly1|477495|fgenesh2_kg.3__196__AT3G02580.1 1465 0.0
Ahg477496 jgi|Araly1|477496|fgenesh2_kg.3__197__AT3G02590.1 741 0.0
Ahg927748 jgi|Araly1|927748|scaffold_300205.1 468 5e-131
> Ahg477495 jgi|Araly1|477495|fgenesh2_kg.3__196__AT3G02580.1
Length=1019
Score = 1465 bits (793), Expect = 0.0
Identities = 877/919 (95%), Gaps = 0/919 (0%)
Strand=Plus/Plus
Query 86 ATCAATCCGGCGAATCTTCTTTCGTTTTCCGGCACCGATCTCGGTGGATCTCCGATTCAC 145
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATCAAGCCGGCGAATCTTCTTTCGTTTTCCGGCACCGATCTCGGTGGATCTCCGATTTAA 60
Query 146 ATGGCGGCGGATAATGCTTATCTGATGCAGTTTGTTGACGAAACCTCTTTTTACAACCGA 205
||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 ATGGCAGCGGACAATGCGTATCTGATGCAGTTTGTCGACGAAACCTCTTTTTACAACCGA 120
Query 206 ATCGTTCTGAGTCATCTTTTGCCGGCGAATCTATGGGAACCCTTACCTCATTTTCTCCAG 265
|||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 121 ATCGTTTTGAGTCATCTTTTGCCGGCGAATCTGTGGGATCCCTTACCTCATTTTCTCCAG 180
Query 266 ACATGGCTCCGAAATTACCTCGCCGGAACCCTACTATACTTCATCTCCGGTTTCCTCTGG 325
|||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 181 ACATGGCTTCGAAATTACCTCGCCGGAACCCTACTCTACTTCATCTCCGGCTTCCTCTGG 240
Query 326 TGCTTCTACATCTATTACCTTAAAATCAACGTTTACCTTCCCAAAGATGCAATTCCTACA 385
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 241 TGCTTCTACATCTATTACCTCAAAATCAACGTTTACCTTCCCAAAGATGCCATTCCTACA 300
Query 386 ATAAAGGCTATGCGTTTGCAAATGTTTGTGGCAATGAAGGCTATGCCATGGTACACTCTT 445
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 301 ATAAAGGCTATGCGTTTGCAAATGTTTGTGGCAATGAAGGCTATGCCTTGGTATACTCTT 360
Query 446 CTTCCAACTGTCTCCGAGAGTATGATTGAACGTGGTTGGACCAAATGTTTTGCTAGCATA 505
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 361 CTTCCAACTGTCTCCGAGAGTATGATTGAACGTGGTTGGACCAAGTGTTTCGCTAGCATA 420
Query 506 GGCGAATTCGGCTGGATTCTGTATTTTGTTTACATCGCCATCTATCTTGTTTTCGTTGAG 565
||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 421 GGCGAATTCGGCTGGATCCTCTATTTTGTTTACATTGCCATCTATCTTGTTTTCGTTGAG 480
Query 566 TTTGGTATTTATTGGATGCACAGAGAGCTTCATGACATTAAGCCTCTCTATAAGTATCTC 625
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 481 TTTGGTATTTATTGGATGCACAGAGAGCTTCATGATATCAAGCCTCTCTATAAGTATCTC 540
Query 626 CATGCCACCCATCATATCTACAACAAGCAGAATACACTCTCTCCATTTGCCGGGCTTGCA 685
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 541 CATGCGACCCATCATATCTACAACAAGCAAAATACACTCTCTCCATTTGCCGGGCTTGCG 600
Query 686 TTTCACCCAGTAGACGGGATACTTCAGGCTGTACCGCATGTGATAGCGCTGTTTATAGTG 745
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTTCACCCAGTAGATGGGATACTTCAGGCTGTACCGCATGTGATAGCGCTGTTTATAGTG 660
Query 746 CCAATTCATTTCACAACTCATATAGGTCTTTTGTTCATGGAAGCGATATGGACGGCGAAC 805
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 661 CCAATTCATTTCACAACCCATATAGGTCTTTTGTTCATGGAAGCGATATGGACAGCGAAC 720
Query 806 ATCCATGACTGCATCCATGGCAACATCTGGCCAGTAATGGGTGCAGGATACCATACGATA 865
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||
Sbjct 721 ATCCATGACTGCATCCACGGCAACATCTGGCCTGTAATGGGTGCAGGATACCATACTATA 780
Query 866 CACCACACGACATACAAGCATAACTATGGTCATTATACCATATGGATGGATTGGATGTTT 925
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CACCACACAACATACAAGCATAACTATGGTCATTATACCATATGGATGGATTGGATGTTT 840
Query 926 GGCTCTCTTAGGGATCCTCTCTTAGAAGAAGATGACAACAAAGACAGCTTCAAGAAAGCA 985
||||| |||| ||| ||||| ||||||||||||| ||||||||| |||| |||||||||
Sbjct 841 GGCTCCCTTAAGGACCCTCTTTTAGAAGAAGATGGCAACAAAGATAGCTCCAAGAAAGCT 900
Query 986 GAGTGAGAATGCCCACTTG 1004
|||||||||||||||||||
Sbjct 901 GAGTGAGAATGCCCACTTG 919
> Ahg477496 jgi|Araly1|477496|fgenesh2_kg.3__197__AT3G02590.1
Length=855
Score = 741 bits (401), Expect = 0.0
Identities = 680/807 (84%), Gaps = 49/807 (6%)
Strand=Plus/Plus
Query 188 ACCTCTTTTTACAACCGAATCGTTCTGAGTCATCTTTTGCCGGCGAATCTATGGGAACCC 247
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 43 ACCTCTTTTTACAACCGAATGGTTCTGAGTCACCTTTTGCCGGCGAATCTATGGGAACCT 102
Query 248 TTACCTCATTTTCTCCAGACATGGCTCCGAAATTACCTCGCCGGAACCCTACTATACTTC 307
||||| ||||| || |||||||||||||| || ||||||||||||| | |||| ||||||
Sbjct 103 TTACCACATTTCCTTCAGACATGGCTCCGGAACTACCTCGCCGGAAACATACTCTACTTC 162
Query 308 ATCTCCGG-TTTCCTCTGGTGCTTCTACATCTATTACCTTAAAATCAACGTTTACCTTCC 366
|||||||| ||| || ||||||||||||||||||||||||||| |||||||||| | |||
Sbjct 163 ATCTCCGGCTTT-CTTTGGTGCTTCTACATCTATTACCTTAAACTCAACGTTTA-CGTCC 220
Query 367 C-AAAGATGCAATTCCTACAATAAAGGCTATGCGTTTGCAAATGTTTGTGGCAATGAAGG 425
| |||||| | |||||||||| ||||||||||| ||||||||| | ||||||||||||
Sbjct 221 CAAAAGATTCCATTCCTACAAGAAAGGCTATGCTTTTGCAAATATACATGGCAATGAAGG 280
Query 426 CTATGCCATGGTACACTCTTCTTCCAACTGTCTCCGAG-AGTATGATTGAACGTGGTTGG 484
||||||| |||||||||||||||||| ||||||| ||| | ||||| || | |||||||
Sbjct 281 CTATGCCTTGGTACACTCTTCTTCCAGCTGTCTCTGAGTA-CATGATCGAGCATGGTTGG 339
Query 485 ACCAAATGTT-TTGCTAGCA-TAGGCGAATTCGGCTGGATTCTGTAT-TTTG-TTTACAT 540
|||||||||| | ||| || | | | | ||| |||| ||| || | |||| | |||||
Sbjct 340 ACCAAATGTTACT-CTA-CACTTGACCATTTCAACTGG-TTC-GTCTGTTTGCTCTACAT 395
Query 541 CGC-CATCTATCTTGTTTTCGTTGAGTTTGGT-ATTTATTGGATGCACAGAGAGCTTCAT 598
|| | ||||||||||||| ||||||||| | ||||||||| | |||| ||||||||||
Sbjct 396 AGCTC-TCTATCTTGTTTTGGTTGAGTTT-ATGATTTATTGGGTTCACAAAGAGCTTCAT 453
Query 599 GACATTAAGCCTCTCTATAAGTATCTCCATGCCACCCATCATATCTACAACAAGCAGAAT 658
||| |||| |||||||||| |||||||||| ||||| ||||| |||||||| || ||
Sbjct 454 GACTTTAATTTTCTCTATAAGCATCTCCATGCGACCCACCATATGTACAACAAACAAAAC 513
Query 659 ACACTCTCTCCATTTGCCGGGCTTGCATTTCACCCAG-TAGACGGGATACTTCAGGCTGT 717
|||||||| |||||||||||||| ||||||||||| | | ||||||||||||||||||||
Sbjct 514 ACACTCTCCCCATTTGCCGGGCTCGCATTTCACCC-GTTGGACGGGATACTTCAGGCTGT 572
Query 718 ACCGCA--TG-T---G--A-T----A-G----CGCTGTTTATAGTGCCAATTCAT-TTCA 758
|||||| || | | | | | | |||||||||||||||| |||||| | |
Sbjct 573 ACCGCACGTGATAGCGCCAGTGCCGATGATATCGCTGTTTATAGTGCCGATTCATCAT-A 631
Query 759 CAACTCATATAG-GTCTTTTGTTCATGGAAGCGATATGGACGGCGAA-CATCCATGACTG 816
||| ||| | | |||||||||| | |||| ||||||||| || || ||||||||| ||
Sbjct 632 TAACACAT-TTGAGTCTTTTGTTTTTTGAAGGGATATGGACAGC-AAGCATCCATGATTG 689
Query 817 CATCCATGGCAACATCTGGCC-AGTAATGGGTGCAGGATACCATACGATACACCACACGA 875
||||||||| ||||| ||||| | ||||||| |||||||||||||| |||||||| ||||
Sbjct 690 CATCCATGGTAACATTTGGCCTA-TAATGGGAGCAGGATACCATACCATACACCATACGA 748
Query 876 CATACAAGCATAACTATGGTCATTATACCATATGGATGGATTGGATGTTTGGCTCTCTTA 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 749 CATACAAGCATAACTATGGTCATTATACCATATGGATGGATTGGATGTTTGGCTCCCTTA 808
Query 936 GGGATCCTCTCTTAGAAGAAGATGACA 962
||| |||| | | || |||||| ||||
Sbjct 809 GGGTTCCT-T-T-AGCAGAAGAAGACA 832
> Ahg927748 jgi|Araly1|927748|scaffold_300205.1
Length=730
Score = 468 bits (253), Expect = 5e-131
Identities = 446/536 (83%), Gaps = 25/536 (5%)
Strand=Plus/Plus
Query 438 ACACTCTTCTTCCAACTGTCTCCGAG-AGTATGATTGAACGTGGTTGGACCAAATGTT-T 495
||| |||||||||| |||| || ||| | |||||| || | |||||||||| ||||||
Sbjct 166 ACAGTCTTCTTCCAGCTGTATCTGAGTA-TATGATCGAGCATGGTTGGACCCAATGTTAC 224
Query 496 TGCTAGC-ATAGGCGAATTCGGCTGGATT---CTGTATTTTGTTTACATCGC-CATCTAT 550
| ||| | || | | | ||| |||| || ||||| | | ||||| | | |||||
Sbjct 225 T-CTA-CAATTGACCATTTCAACTGG-TTCCACTGTA--TCCTCTACATAACTC-TCTAT 278
Query 551 CTTGTTTTCGTTGAGTTTGGTATTTATTGGATGCACAGAGAGCTTCATGACATTAAGCCT 610
|||| ||| ||||||||||| |||||||||| |||| |||||||||||||| ||| |
Sbjct 279 CTTGCTTTAGTTGAGTTTGGGGTTTATTGGATTCACAAAGAGCTTCATGACAATAAATTT 338
Query 611 CTCTATAAGTATCTCCATGCCACCCATCATATCTACAACAAGCAGAATACACTCTCTCCA 670
||||||||| |||||||||| |||| ||| |||||||||||||| || ||| ||||||||
Sbjct 339 CTCTATAAGCATCTCCATGCGACCCGTCACATCTACAACAAGCAAAACACAATCTCTCCA 398
Query 671 TTTGCCGGGCTT-GCATTTCACCCAG-TAGACGGGATACTTCAGGCTGTACCGCATGTGA 728
||||| ||| || ||||| || || | | ||||||||| ||||| || ||||||||||||
Sbjct 399 TTTGCTGGG-TTCGCATTCCATCC-GTTGGACGGGATAATTCAGTCTTTACCGCATGTGA 456
Query 729 TAGCGCTGTTTATAGTGCCAATTCATTTCACAACTCATATAG-GTCTTTTGTTCAT-GGA 786
||||||||||||||||||| |||||| ||| ||| ||| | | | |||||| || | |||
Sbjct 457 TAGCGCTGTTTATAGTGCCGATTCATCTCATAACACATCT-GTGCCTTTTG-TCTTCGGA 514
Query 787 AGCGATATGGACGGCGAACATCCATGACTGCATCCATGGCAACATCTGGCCAGTAATGGG 846
|| ||||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 515 AGGGATATGGACAGCAAACATCCATGACTGCATCCACGGCAACATCTGGCCAGTAATGGG 574
Query 847 TGCAGGATACCATACGATACACCACACGACATACAAGCATAACTATGGTCATTATACCAT 906
||||||||||||||||||||||||||| |||||||||||||||||||| || | |||||
Sbjct 575 TGCAGGATACCATACGATACACCACACCACATACAAGCATAACTATGGCCACAAAACCAT 634
Query 907 ATGGATGGATTGGATGTTTGGCTCTCTTAGGGATCCTCTCTTAGAAGAAGATGACA 962
|| |||||||||||||||||||||||||| || | ||| |||| |||||| ||||
Sbjct 635 ATTGATGGATTGGATGTTTGGCTCTCTTAAGGCT--TCT-TTAGCAGAAGAAGACA 687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43688862882
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5