BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02590.1
Length=840
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477496 jgi|Araly1|477496|fgenesh2_kg.3__197__AT3G02590.1 1227 0.0
Ahg477495 jgi|Araly1|477495|fgenesh2_kg.3__196__AT3G02580.1 824 0.0
Ahg927748 jgi|Araly1|927748|scaffold_300205.1 730 0.0
> Ahg477496 jgi|Araly1|477496|fgenesh2_kg.3__197__AT3G02590.1
Length=855
Score = 1227 bits (664), Expect = 0.0
Identities = 799/860 (93%), Gaps = 25/860 (3%)
Strand=Plus/Plus
Query 1 ATGGCGGCGACTATG-GCAGATTATAATGATCAGATCGTCAATGAGACCTCTTTTTACAA 59
||||||||||||| | ||||||||| | ||||| |||||| ||||||||||||||||||
Sbjct 1 ATGGCGGCGACTA-GTGCAGATTAT-A--ATCAGTTCGTCAGTGAGACCTCTTTTTACAA 56
Query 60 CCGAATGGTTCTGAGTCACCTTTTGCCGGTGAATCTATGGGAACCTTTACCACATTTCCT 119
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 57 CCGAATGGTTCTGAGTCACCTTTTGCCGGCGAATCTATGGGAACCTTTACCACATTTCCT 116
Query 120 CCAGACATGGCTCCGGAACTACCTCGCCGGAAACATACTCTACTTCATCTCCGGCTTCCT 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 117 TCAGACATGGCTCCGGAACTACCTCGCCGGAAACATACTCTACTTCATCTCCGGCTTTCT 176
Query 180 CTGGTGCTTCTACATCTATTACCTTAAACTCAACGTTTACGTCCCCAAAGAATCCATTCC 239
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 177 TTGGTGCTTCTACATCTATTACCTTAAACTCAACGTTTACGTCCCAAAAGATTCCATTCC 236
Query 240 TACGAGAAAGGCAATGCTTTTGCAAATATACGTGGCAATGAAGGCTATGCCTTGGTACAC 299
||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 237 TACAAGAAAGGCTATGCTTTTGCAAATATACATGGCAATGAAGGCTATGCCTTGGTACAC 296
Query 300 TCTTCTTCCAGCTGTCTCTGAGTATATGATCGAGCATGGTTGGACCAAATGTTACTCTAC 359
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 297 TCTTCTTCCAGCTGTCTCTGAGTACATGATCGAGCATGGTTGGACCAAATGTTACTCTAC 356
Query 360 ACTTGACCATTTCAACTGGTTCCTCTGTTTCCTCTACATAGCTCTCTATCTTGTTTTAGT 419
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||
Sbjct 357 ACTTGACCATTTCAACTGGTTCGTCTGTTTGCTCTACATAGCTCTCTATCTTGTTTTGGT 416
Query 420 TGAGTTTATGATTTATTGGGTTCACAAAGAGCTTCATGACATTAAATTTCTCTATAAGCA 479
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 417 TGAGTTTATGATTTATTGGGTTCACAAAGAGCTTCATGACTTTAATTTTCTCTATAAGCA 476
Query 480 TCTCCATGCTACCCATCATATGTACAACAAGCAAAACACACTCTCTCCATTTGCCGGGCT 539
||||||||| ||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 477 TCTCCATGCGACCCACCATATGTACAACAAACAAAACACACTCTCCCCATTTGCCGGGCT 536
Query 540 CGCATTCCATCCGCTGGACGGGATACTTCAGGCTATACCGCACGTGATAGCGC---TG-- 594
|||||| || ||| |||||||||||||||||||| |||||||||||||||||| ||
Sbjct 537 CGCATTTCACCCGTTGGACGGGATACTTCAGGCTGTACCGCACGTGATAGCGCCAGTGCC 596
Query 595 --T--T-T--------ATAGTGCCGATTCATC-TCATAACACATCTGAGTCTTTTGTTTT 640
| | | |||||||||||||||| | ||||||||| |||||||||||||||
Sbjct 597 GATGATATCGCTGTTTATAGTGCCGATTCATCAT-ATAACACATTTGAGTCTTTTGTTTT 655
Query 641 TGGAAGGGATATGGACAGCAAGCATCCATGATTGCATACATGGTAACATCTGGCCTATAA 700
| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 656 TTGAAGGGATATGGACAGCAAGCATCCATGATTGCATCCATGGTAACATTTGGCCTATAA 715
Query 701 TGGGTGCAGGATACCATACCATACACCATACAACATACAAGCATAACTATGGTCATTATA 760
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 716 TGGGAGCAGGATACCATACCATACACCATACGACATACAAGCATAACTATGGTCATTATA 775
Query 761 CCATATGGATGGACTGGATGTTTGGCTCTCTTATGGTTCCTTTAGCAGAAAAAGACAGTT 820
||||||||||||| |||||||||||||| |||| |||||||||||||||| |||||||||
Sbjct 776 CCATATGGATGGATTGGATGTTTGGCTCCCTTAGGGTTCCTTTAGCAGAAGAAGACAGTT 835
Query 821 TCAAGGAGAAAGAAAAGTGA 840
|||||||||||| |||||||
Sbjct 836 TCAAGGAGAAAGCAAAGTGA 855
> Ahg477495 jgi|Araly1|477495|fgenesh2_kg.3__196__AT3G02580.1
Length=1019
Score = 824 bits (446), Expect = 0.0
Identities = 669/776 (86%), Gaps = 17/776 (2%)
Strand=Plus/Plus
Query 27 TGAT-CAGATCGTCAATGAGACCTCTTTTTACAACCGAATGGTTCTGAGTCACCTTTTGC 85
|||| ||| | ||| | || |||||||||||||||||||| ||| ||||||| |||||||
Sbjct 83 TGATGCAGTTTGTCGACGAAACCTCTTTTTACAACCGAATCGTTTTGAGTCATCTTTTGC 142
Query 86 CGGTGAATCTATGGGAACCTTTACCACATTTCCTCCAGACATGGCTCCGGAACTACCTCG 145
||| |||||| ||||| || ||||| ||||| |||||||||||||| || || |||||||
Sbjct 143 CGGCGAATCTGTGGGATCCCTTACCTCATTTTCTCCAGACATGGCTTCGAAATTACCTCG 202
Query 146 CCGGAAACATACTCTACTTCATCTCCGGCTTCCTCTGGTGCTTCTACATCTATTACCTTA 205
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 203 CCGGAACCCTACTCTACTTCATCTCCGGCTTCCTCTGGTGCTTCTACATCTATTACCTCA 262
Query 206 AACTCAACGTTTACGTCCCCAAAGAAT-CCATTCCTACGAGAAAGGCAATGCTTTTGCAA 264
|| ||||||||||| | |||||||| | |||||||||| | |||||| |||| |||||||
Sbjct 263 AAATCAACGTTTACCTTCCCAAAGA-TGCCATTCCTACAATAAAGGCTATGCGTTTGCAA 321
Query 265 ATATACGTGGCAATGAAGGCTATGCCTTGGTACACTCTTCTTCCAGCTGTCTCTGAGTA- 323
|| | |||||||||||||||||||||||||| |||||||||||| ||||||| ||| |
Sbjct 322 ATGTTTGTGGCAATGAAGGCTATGCCTTGGTATACTCTTCTTCCAACTGTCTCCGAG-AG 380
Query 324 TATGATCGAGCATGGTTGGACCAAATGTTACTCTA-CACTTGACCATTTCAACTGGTTCC 382
|||||| || | |||||||||||| |||| | ||| || | | | | ||| |||| |||
Sbjct 381 TATGATTGAACGTGGTTGGACCAAGTGTTTCGCTAGCA-TAGGCGAATTCGGCTGGATCC 439
Query 383 TCTGTTTCCTCTACATAGCTC-TCTATCTTGTTTTAGTTGAGTTTA-TGATTTATTGGGT 440
||| ||| | ||||| || | ||||||||||||| ||||||||| | ||||||||| |
Sbjct 440 TCTATTTTGTTTACATTGC-CATCTATCTTGTTTTCGTTGAGTTTGGT-ATTTATTGGAT 497
Query 441 TCACAAAGAGCTTCATGACATTAAATTTCTCTATAAGCATCTCCATGCTACCCATCATAT 500
|||| |||||||||||| || || |||||||||| |||||||||| |||||||||||
Sbjct 498 GCACAGAGAGCTTCATGATATCAAGCCTCTCTATAAGTATCTCCATGCGACCCATCATAT 557
Query 501 GTACAACAAGCAAAACACACTCTCTCCATTTGCCGGGCTCGCATTCCATCC-GCTGGACG 559
|||||||||||||| ||||||||||||||||||||||| || || || || | | || |
Sbjct 558 CTACAACAAGCAAAATACACTCTCTCCATTTGCCGGGCTTGCGTTTCACCCAG-TAGATG 616
Query 560 GGATACTTCAGGCTATACCGCACGTGATAGCGCTGTTTATAGTGCCGATTCATCTCATAA 619
|||||||||||||| ||||||| ||||||||||||||||||||||| |||||| ||| ||
Sbjct 617 GGATACTTCAGGCTGTACCGCATGTGATAGCGCTGTTTATAGTGCCAATTCATTTCACAA 676
Query 620 CACATCTGAG-TCTTTTGTTTTTGGAAGGGATATGGACAGC-AAGCATCCATGATTGCAT 677
| ||| | || ||||||||| |||||| |||||||||||| || ||||||||| |||||
Sbjct 677 CCCATAT-AGGTCTTTTGTTCATGGAAGCGATATGGACAGCGAA-CATCCATGACTGCAT 734
Query 678 ACATGGTAACATCTGGCCTATAATGGGTGCAGGATACCATACCATACACCATACAACATA 737
|| || |||||||||||| |||||||||||||||||||||| |||||||| ||||||||
Sbjct 735 CCACGGCAACATCTGGCCTGTAATGGGTGCAGGATACCATACTATACACCACACAACATA 794
Query 738 CAAGCATAACTATGGTCATTATACCATATGGATGGACTGGATGTTTGGCTCTCTTA 793
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 795 CAAGCATAACTATGGTCATTATACCATATGGATGGATTGGATGTTTGGCTCCCTTA 850
> Ahg927748 jgi|Araly1|927748|scaffold_300205.1
Length=730
Score = 730 bits (395), Expect = 0.0
Identities = 497/547 (91%), Gaps = 4/547 (1%)
Strand=Plus/Plus
Query 296 ACACTCTTCTTCCAGCTGTCTCTGAGTATATGATCGAGCATGGTTGGACCAAATGTTACT 355
||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 166 ACAGTCTTCTTCCAGCTGTATCTGAGTATATGATCGAGCATGGTTGGACCCAATGTTACT 225
Query 356 CTACACTTGACCATTTCAACTGGTTCCTCTGTTTCCTCTACATAGCTCTCTATCTTGTTT 415
||||| ||||||||||||||||||||| |||| ||||||||||| |||||||||||| ||
Sbjct 226 CTACAATTGACCATTTCAACTGGTTCCACTGTATCCTCTACATAACTCTCTATCTTGCTT 285
Query 416 TAGTTGAGTTTATGATTTATTGGGTTCACAAAGAGCTTCATGACATTAAATTTCTCTATA 475
||||||||||| | |||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 286 TAGTTGAGTTTGGGGTTTATTGGATTCACAAAGAGCTTCATGACAATAAATTTCTCTATA 345
Query 476 AGCATCTCCATGCTACCCATCATATGTACAACAAGCAAAACACACTCTCTCCATTTGCCG 535
||||||||||||| |||| ||| || |||||||||||||||||| ||||||||||||| |
Sbjct 346 AGCATCTCCATGCGACCCGTCACATCTACAACAAGCAAAACACAATCTCTCCATTTGCTG 405
Query 536 GGCTCGCATTCCATCCGCTGGACGGGATACTTCAGGCTATACCGCACGTGATAGCGCTGT 595
|| |||||||||||||| ||||||||||| ||||| || ||||||| |||||||||||||
Sbjct 406 GGTTCGCATTCCATCCGTTGGACGGGATAATTCAGTCTTTACCGCATGTGATAGCGCTGT 465
Query 596 TTATAGTGCCGATTCATCTCATAACACATCTGAGTCTTTTGTTTTTGGAAGGGATATGGA 655
|||||||||||||||||||||||||||||||| | ||||||| || ||||||||||||||
Sbjct 466 TTATAGTGCCGATTCATCTCATAACACATCTGTGCCTTTTGTCTTCGGAAGGGATATGGA 525
Query 656 CAGCAAGCATCCATGATTGCATACATGGTAACATCTGGCCTA-TAATGGGTGCAGGATAC 714
|||||| ||||||||| ||||| || || ||||||||||| | |||||||||||||||||
Sbjct 526 CAGCAAACATCCATGACTGCATCCACGGCAACATCTGGCC-AGTAATGGGTGCAGGATAC 584
Query 715 CATACCATACACCATACAACATACAAGCATAACTATGGTCATTATACCATATGGATGGAC 774
||||| |||||||| || |||||||||||||||||||| || | ||||||| ||||||
Sbjct 585 CATACGATACACCACACCACATACAAGCATAACTATGGCCACAAAACCATATTGATGGAT 644
Query 775 TGGATGTTTGGCTCTCTTATGG-TTCCTTTAGCAGAAAAAGACAGTTTCAAGGAGAAAGA 833
||||||||||||||||||| || ||| |||||||||| |||||||||||||||||||||
Sbjct 645 TGGATGTTTGGCTCTCTTAAGGCTTC-TTTAGCAGAAGAAGACAGTTTCAAGGAGAAAGC 703
Query 834 AAAGTGA 840
|||||||
Sbjct 704 AAAGTGA 710
Score = 202 bits (109), Expect = 4e-51
Identities = 134/145 (92%), Gaps = 5/145 (3%)
Strand=Plus/Plus
Query 1 ATGGCGGCGACTATG-GCAGATTATAATGATCAGATCGTCAATGAGACCTCTTTTTACAA 59
||||||||||||| | ||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 24 ATGGCGGCGACTA-GTGCAGATTAT-A--ATCAGTTCGTCAATGAGACCTCTTTTTACAA 79
Query 60 CCGAATGGTTCTGAGTCACCTTTTGCCGGTGAATCTATGGGAACCTTTACCACATTTCCT 119
||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 80 CCGTATGGTTCTGAGTCACCTTTTGCCGGCGAGTCTATGGGAACCTTTACCACATTTCCT 139
Query 120 CCAGACATGGCTCCGGAACTACCTC 144
|||||||||||| |||||||||||
Sbjct 140 TCAGACATGGCTCAGGAACTACCTC 164
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31070177355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5