BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02610.1
Length=1444
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903064 jgi|Araly1|903064|Al_scaffold_0003_192 1951 0.0
Ahg488473 jgi|Araly1|488473|fgenesh2_kg.6__1607__AT5G16230.1 1022 0.0
> Ahg903064 jgi|Araly1|903064|Al_scaffold_0003_192
Length=1242
Score = 1951 bits (1056), Expect = 0.0
Identities = 1181/1243 (95%), Gaps = 2/1243 (0%)
Strand=Plus/Plus
Query 40 ATGAAGATGGCTCTTCTCTTGAACTCGACGATAACGGTGGCTATGAAGCAGAAT-CCGCT 98
|||| ||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||
Sbjct 1 ATGACGATGGCTCTTCTCTTCAACTCGACGATGACGGTGGCTATGAAGCAGAATCCCGC- 59
Query 99 GGTCGCGGTATCTTTTCCGCGGACTACTTGCTTGGGATCTAGTTTTTCTCCTCCTCGTCT 158
||| ||||||||||||||| | || |||||||||||| ||||| ||||||||||||||
Sbjct 60 AGTCACGGTATCTTTTCCGCCGCCTGCTTGCTTGGGATATAGTTATTCTCCTCCTCGTCG 119
Query 159 TCTTCGAGTTTCGTGTGTTGCCACAAACCCTAGCAAGACGAGTGAAGAAACAGACAAGAA 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCTTCGAGTTTCGTGTGTTGCCACAAACCCTAGCAAGACGAGTGAAGAAACAGACAAGAA 179
Query 219 AAAGTTTCGACCCATCAAAGAAGTACCAAACCAAGTGACCCACACAATAACACAAGAGAA 278
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 180 AAAGTTTCGACCCATCAAAGAAGTATCAAACCAAGTGACACACACAATAACACAAGAGAA 239
Query 279 ACTGGAGATCTTCAAATCAATGGAGAATTGGGCCCAAGAAAACTTATTATCTTACCTCAA 338
|| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 240 GCTCGAAATCTTCAAATCAATGGAGAGTTGGGCCCAAGAAAACTTATTATCTTACCTCAA 299
Query 339 ACCCGTCGAAGCTTCCTGGCAACCACAAGACTTTTTGCCGGAAACCAACGACGAAGACCG 398
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 300 ACCCGTCGAAGCTTCATGGCAACCACAAGACTTTCTGCCGGAAACCAACGACGAAGACCG 359
Query 399 ATTCTACGAACAAGTAAAAGAGCTAAGAGATCGAACAAAAGAGATCCCTGACGATTACTT 458
||||||||| ||||| ||||| |||||| ||||||||| |||||||||||||||||||||
Sbjct 360 ATTCTACGAGCAAGTGAAAGACCTAAGAAATCGAACAAGAGAGATCCCTGACGATTACTT 419
Query 459 TGTAGTTCTTGTCGGAGATATGATCACCGAAGAAGCTTTACCAACTTATCAAACTACTTT 518
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 420 TGTAGTTCTTGTCGGAGATATGATCACCGAAGAAGCATTACCGACTTATCAAACGACTTT 479
Query 519 GAACACTCTCGACGGCGTAAAAGACGAGACCGGTGGTAGTCTAACGCCGTGGGCGGTTTG 578
||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct 480 GAACACTCTCGACGGCGCCAAAGACGAGACCGGTGGGAGTCTAACACCGTGGGCGGTTTG 539
Query 579 GGTTCGAGCATGGACGGCGGAGGAAAATCGACACGGTGATTTGTTGAATAAGTATCTTTA 638
|||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 540 GGTTAGAGCGTGGACGGCGGAGGAAAATCGACACGGCGATTTGTTGAATAAGTATCTTTA 599
Query 639 CTTATCAGGTCGTGTTGACATGCGACATGTTGAAAAGACTATTCAATATCTTATCGGATC 698
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CTTATCGGGTCGTGTTGATATGCGACATGTTGAAAAGACTATTCAATATCTTATCGGATC 659
Query 699 CGGCATGGACTCCAAATTTGAGAACAATCCCTATAATGGCTTCATCTATACTTCTTTTCA 758
||||||||||||||||||||| |||||||| || |||||||||||||| |||||||||||
Sbjct 660 CGGCATGGACTCCAAATTTGAAAACAATCCTTACAATGGCTTCATCTACACTTCTTTTCA 719
Query 759 AGAGAGAGCCACTTTCATCTCCCATGGCAACACGGCGAAGCTAGCCACAACCTACGGCGA 818
||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 720 AGAGAGAGCCACTTTTATCTCCCACGGCAACACGGCGAAGCTAGCCACGACCTACGGCGA 779
Query 819 CACAACTCTCGCCAAAATCTGCGGAACAATCGCGGCGGATGAGAAGCGGCATGAGACGGC 878
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 780 CACAACTCTCGCCAAAATCTGCGGAACAATCGCGGCGGACGAGAAGCGGCACGAGACGGC 839
Query 879 GTATACACGGATCGTCGAGAAGCTTTTCGAGATCGATCCCGATGGTACCGTACAAGCTCT 938
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 840 GTACACACGGATCGTCGAGAAGCTATTCGAGATCGATCCCGATGGTACCGTACAAGCTCT 899
Query 939 AGCGAGTATGATGAGGAAGCGAATCACGATGCCGGCTCATCTGATGCACGACGGTCGCGA 998
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AGCGAGTATGATGAAGAAGCGAATCACGATGCCGGCTCATCTGATGCACGACGGTCGCGA 959
Query 999 CGACGATCTGTTCGATCATTACGCTGCGGTGGCGCAGAGAATCGGAGTTTATACCGCGAC 1058
|||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 960 CGACGATCTGTTCGATCATTACGCCGCCGTGGCGCAGAGAATCGGAGTTTACACCGCGAC 1019
Query 1059 GGATTACGCAGGGATTTTGGAGTTTTTGTTGCGGCGGTGGGAGGTGGAGAAGTTAGGGAT 1118
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1020 GGATTACGCCGGGATTTTGGAGTTTTTGTTGCGACGGTGGGAGGTGGAGAAGTTAGGGAT 1079
Query 1119 GGGTTTGTCCGGCGAAGGAAGGAGAGCACAGGATTATCTGTGTACCTTGCCGCAGAGGAT 1178
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1080 GGGTTTGTCCGGTGAAGGAAGGAGAGCACAAGATTATCTGTGTACCTTGCCGCAGAGGAT 1139
Query 1179 CAGGAGGTTAGAGGAAAGAGCTAACGATAGAGTCAAACTTGCGTCAAAGTCAAAACCTTC 1238
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1140 CAGGAGGTTAGAGGAAAGAGCTAACGATAGAGTCAAACTCGGGTCAAAGTCAAAACCTTC 1199
Query 1239 TGTTTCCTTCAGCTGGATTTATGGGAGAGAAGTTGAACTATAA 1281
||| ||||||||||||||||| ||||||| |||||||||||||
Sbjct 1200 TGTCTCCTTCAGCTGGATTTACGGGAGAGGAGTTGAACTATAA 1242
> Ahg488473 jgi|Araly1|488473|fgenesh2_kg.6__1607__AT5G16230.1
Length=1234
Score = 1022 bits (553), Expect = 0.0
Identities = 962/1157 (83%), Gaps = 37/1157 (3%)
Strand=Plus/Plus
Query 144 TTCTCCTCCTCGTCTTCTTCGAGTTTCGTGTGTTGCCACAAACCCTAGCAAGACG-AGTG 202
||||||| |||||| |||||||||||| |||||| | ||||||||| || || | |
Sbjct 63 TTCTCCTTCTCGTCGTCTTCGAGTTTCATGTGTTACGACAAACCCT-GCTAG-GGAAAAA 120
Query 203 AA-GAAACA-GACAAGAAAAAGTTTCGACCCATCAAAGAAGTACCA-AACCAAGTGACCC 259
|| |||||| | ||| | | |||||||| |||||||||||| | |||||| | || |
Sbjct 121 AACGAAACATG-CAATCAGTACTTTCGACCTATCAAAGAAGTA-AATAACCAAATAACAC 178
Query 260 ACACAATAACACAAGAGAAACTGGAGATCTTCAAATCAATGGAGAATTGGGCCCAAGAAA 319
|||||||| |||||||||| || ||||||||||||||||||||||||||||| || |||
Sbjct 179 ACACAATACCACAAGAGAAGCTTGAGATCTTCAAATCAATGGAGAATTGGGCAGAACAAA 238
Query 320 A-CTTATTATCTTACCTCAAACCCGTCGAAGCTTCCTGGCAACCACAAGACTTTTTGCCG 378
| || | || |||| |||||||| ||||||| ||| |||||||||||||||||||| ||
Sbjct 239 AACT-ACTACCTTATCTCAAACCGGTCGAAGATTCATGGCAACCACAAGACTTTTTACCT 297
Query 379 GAAACCA-ACGA-CGAAGACCGA-TTCTACGAACAAGTAAAAGAGCTAAGAGATCGAACA 435
| ||| | || ||| ||| || |||||||| | |||||||||| | ||||| ||||||
Sbjct 298 GCG-CCAGA-GAACGACGAC-GAATTCTACGACCGAGTAAAAGAGATCAGAGAACGAACA 354
Query 436 AAAGAGATCCCTGACGATTACTTTGTAGTTCTTGTCGGAGATATGATCACCGAAGAAGCT 495
|||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 355 AAAGAGATACCTGACGATTACTTTGTGGTTCTTGTGGGAGATATGATCACAGAAGAAGCA 414
Query 496 -TTACCAACTTATCAAACTACTTTGAACACTCTCGACGGCGTAAAAGACGAGACCGGTGG 554
|| ||||| |||||||| || || ||||| || |||||||| || || || ||||||||
Sbjct 415 CTT-CCAACGTATCAAACGACGTTAAACACACTTGACGGCGTTAAGGATGAAACCGGTGG 473
Query 555 TAGTCTAACGCCGTGGGCGGTTTGGGTTCGAGCATGGACGGCGGAGGAAAATCGACACGG 614
||| || ||||||||||||| ||| || |||||||||||||||||||||| || |||||
Sbjct 474 GAGTTTATCGCCGTGGGCGGTGTGGATTAGAGCATGGACGGCGGAGGAAAACCGTCACGG 533
Query 615 TGATTTGTTGAATAAGTATCTTTA-CTTATCAGGTCGTGTTGACATGCGACATGTTGAAA 673
|||||| | || ||||||||||| || | | ||||||||||| |||||||||||||| |
Sbjct 534 TGATTTACTCAACAAGTATCTTTATCTAA-CTGGTCGTGTTGATATGCGACATGTTGAGA 592
Query 674 AGACTATTCAATATCTTATCGGATCCGGCATGGACTCCAAATTTGAGAACAATCCCTATA 733
||||||| |||||||| || || || || ||||| || ||||||||||||||||| || |
Sbjct 593 AGACTATACAATATCTCATTGGTTCTGGTATGGATTCGAAATTTGAGAACAATCCATACA 652
Query 734 ATGGCTTCATCTATACTTCTTTTCAAGAGAGAGCCACTTTCATCTCCCATGGCAACACGG 793
|||| |||||||| || || || |||||| |||| || |||||||| || ||||||||||
Sbjct 653 ATGGATTCATCTACACATCATTCCAAGAGCGAGCAACATTCATCTCTCACGGCAACACGG 712
Query 794 CGAAGCTAGCCACAACCTACGGCGACACAACTCTCGCCAAAATCTGCGGAACAATCGCGG 853
||| | ||||||||||||||||||| || ||||| || |||||||| |||||||| |
Sbjct 713 CGAGGTTAGCCACAACCTACGGCGATGTTACCCTCGCGAAGATCTGCGGCACAATCGCCG 772
Query 854 CGGATGAGAAGCGGCATGAGACGGCGTATAC-ACGGATCGTCGAGAAGCTTTTCGAGATC 912
| || || ||||| || ||||||||||| || | | || || |||||||| |||||||||
Sbjct 773 CCGACGAAAAGCGTCACGAGACGGCGTACACGAAG-ATAGTGGAGAAGCTATTCGAGATC 831
Query 913 GATCCCGATGGTACCG-TACAAGCTCTAGCGAGTATGATGAGGAAGCGAATCACGATGCC 971
|| ||||| || | || | || || || ||||||||||||||||| || ||||| |||||
Sbjct 832 GACCCCGACGG-ATCGGTTCAGGCGCTGGCGAGTATGATGAGGAAACGGATCACAATGCC 890
Query 972 GGCTCATCTGATGCACGACGGTCGCGACGACGATCTGTTCGATCATTACGCTGCGGTGGC 1031
|||||||| ||||||||||| | || |||||||||| ||||||||||| || |||||
Sbjct 891 AGCTCATCTTATGCACGACGGAAGAGATAACGATCTGTTTGATCATTACGCCGCCGTGGC 950
Query 1032 GCAGAGAATCGGAGTTTATACCGCGACGGATTACGCAGGGATT-TTGGAGTTTTTGTTGC 1090
|||| |||| ||||||||||| |||||||||||||| ||||| ||| ||||| ||||||
Sbjct 951 GCAGCGAATTGGAGTTTATACGGCGACGGATTACGCTGGGATACTTG-AGTTTCTGTTGC 1009
Query 1091 GGCGGTGGGAGGTGGAGAAGTTAGGGAT-GGGTTTGTCCGGCGAAGGAAGGAGAGCACAG 1149
|||||||| ||||||||| ||| ||| | ||| || || || ||||||||||||||||||
Sbjct 1010 GGCGGTGGAAGGTGGAGA-GTTTGGGGTTGGGGTTATCAGGTGAAGGAAGGAGAGCACAG 1068
Query 1150 GATTATCT-GTGTACCTTGCCGCAGAGGATCAGGAGGTTAGAGGAAAGAGCTAACGATAG 1208
||||| || ||| ||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1069 GATTA-CTTGTGCACCTTGCCGCAGAGGATCAAGAGGTTAGAGGAAAGAGCTAATGATAG 1127
Query 1209 AGTCAAACTTGCGTCAAAGTCAAAACCTTCTGTTTCCTTCAGCTGGATTTATGGGAGAGA 1268
|||||||||| | |||||||||||||||||| || |||||| ||| ||| |||||
Sbjct 1128 GGTCAAACTTG-G-----GTCAAAACCTTCTGTTTCGTTTAGCTGGGTTTTTGGTAGAGA 1181
Query 1269 AGTTGAACTATA-AAAC 1284
||| ||||||| ||||
Sbjct 1182 TGTTAAACTATAGAAAC 1198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54011967410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5