BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02630.1
Length=1671
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477504 jgi|Araly1|477504|fgenesh2_kg.3__205__AT3G02630.1 2377 0.0
Ahg941117 jgi|Araly1|941117|scaffold_601661.1 1253 0.0
> Ahg477504 jgi|Araly1|477504|fgenesh2_kg.3__205__AT3G02630.1
Length=1635
Score = 2377 bits (1287), Expect = 0.0
Identities = 1461/1542 (95%), Gaps = 23/1542 (1%)
Strand=Plus/Plus
Query 1 CCCAAAGTTTCTTCTTCACCTTGTCTCTTTTCACAGTCTCACACAGCATAGAAATAATCG 60
||||||| |||| |||||| ||||||||||||||||||| || ||||||||||||||||
Sbjct 1 CCCAAAGCTTCTGCTTCACATTGTCTCTTTTCACAGTCT--CAGAGCATAGAAATAATCG 58
Query 61 AAAGATT-TCTTTTTAAAATCTGGGATTTG---ttttttttGTTCATTGATCATTTTCGA 116
|||| || |||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 59 AAAGTTTGTCTTTTTAAAATCTGGGATTTGCTTTTTTTTTTGTTCATTGATCATCTTCGA 118
Query 117 TTGTTAGAGAAGAATCAAATGGCGATGGCTATGGATCGGATCGTCTTCTCCCCTTCATCT 176
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TTGTTGGAGAAGAAAAAAATGGCGATGGCTATGGATCGGATCGTCTTCTCCCCTTCATCT 178
Query 177 TACGTCTATCGTCCTTGTCAAGCTAGGGGATCCAGATCTTCCAGAGTTTCCATGGCTTCT 236
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 179 TACGTCTATCGTCCTTGTCAAGTTAGGGGATCCAGATCTTCTAGAGTTTCCATGGCTTCT 238
Query 237 ACGATTCGCTCTGCGACTACAGAGGTTACGAATGGAAGGAAACTGTATATCCCTCCCAGA 296
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 239 ACGATTCGCTCTGCTACTACAGAGGTTACGAATGGAAGGAAACTGTATATCCCTCCTAGA 298
Query 297 GAGGTGCATGTCCAAGTCAAACATTCAATGCCGCCACAAAAGTTAGAGATCTTTAAGTCT 356
||||||||||| ||||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 299 GAGGTGCATGTTCAAGTGAAACATTCAATGCCGCCACAAAAGTTGGAGATCTTCAAGTCT 358
Query 357 TTAGAAGGATGGGCTGATGAAACCCTGTTGACTTATTTAAAACCTGTTGAGAAATCGTGG 416
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 359 TTAGAAGGATGGGCTGATGAAACCCTGTTGACTTATTTAAAGCCTGTTGAGAAATCGTGG 418
Query 417 CAGCCTACCGATTTTCTTCCCGAACCTGAGTCGGAAGGATTCTATGACCAAGTCAAGGAG 476
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 419 CAGCCTACCGATTTTCTTCCCGAACCTGAGTCAGAAGGATTTTATGACCAAGTCAAGGAG 478
Query 477 CTAAGGGAAAGGTGCAAGGAACTTCCTGATGACTATTTTGTGGTGCTTGTTGGGGATATG 536
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TTAAGGGAAAGGTGTAAGGAACTTCCTGATGACTATTTTGTGGTGCTTGTTGGGGATATG 538
Query 537 ATCACTGAAGAAGCACTTCCTACTTACCAGACCATGTTGAACACATTGGATGGTGTTAGG 596
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 539 ATCACTGAAGAAGCACTTCCTACGTACCAGACGATGTTGAACACATTGGATGGTGTTAGG 598
Query 597 GATGAGACAGGAGCTAGTCCTACTCCTTGGGCTATATGGACCAGGGCTTGGACTGCTGAG 656
||||||||||| || ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 599 GATGAGACAGGTGCAAGTCCTACTCCATGGGCTATTTGGACCAGGGCTTGGACTGCTGAG 658
Query 657 GAGAATAGACATGGGGATCTCCTTAACAAGTATCTTTATCTGTCTGGTCGGGTAGACATG 716
|||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||
Sbjct 659 GAGAATAGACATGGGGATCTTCTTAACAAGTATCTTTATTTGTCTGGTCGAGTAGACATG 718
Query 717 AGGCAGATTGAAAAGACTATTCAGTACCTGATTGGTTCTGGAATGGATCCAAAAACTGAA 776
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 719 AGGCAGATTGAAAAGACAATTCAGTACCTGATTGGGTCTGGAATGGATCCAAAAACTGAA 778
Query 777 AACAACCCTTACTTGGGTTTCATCTACACATCATTTCAAGAAAGAGCGACCTTCATCTCC 836
|| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 779 AATAATCCTTACTTGGGTTTCATCTACACATCCTTTCAAGAAAGAGCGACCTTCATCTCC 838
Query 837 CATGGAAACACTGCCAGACTGGCGAAAGATCGTGGAGATTTGAAACTTGCGCAGATATGC 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CATGGAAACACTGCCAGACTGGCGAAAGATCGTGGAGATTTGAAACTTGCGCAGATATGC 898
Query 897 GGGACCATTGCTGCTGATGAGAGGCGTCATGAGACTGCTTACACCAAGATTGTAGAGAAG 956
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 899 GGGACCATTGCTGCTGATGAGAGGCGTCATGAGACTGCTTACACCAAGATTGTGGAGAAG 958
Query 957 CTCTTTGAAATTGACCCTGATGGCACGATCTTGGGCCTGGCTGATATGATGAAGAAAAAG 1016
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 959 CTCTTTGAAATTGACCCTGATGGCACGATCTTGGGCTTGGCTGATATGATGAAGAAAAAG 1018
Query 1017 ATATCAATGCCTGCACATTTAATGTATGATGGCCAAGATGATAACCTGTTTGAGCACTTC 1076
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 ATCTCAATGCCTGCACATTTAATGTATGATGGCCAAGATGATAACCTGTTTGAGCACTTC 1078
Query 1077 TCAACCGTTGCCCAGAGGCTCGGTGTCTACACTGCCAAGGACTATGCTGATATTCTGGAG 1136
||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1079 TCAACTGTTGCCCAGAGGCTTGGTGTCTACACCGCCAAGGACTATGCTGATATTCTGGAG 1138
Query 1137 TTTCTTGTTGAACGGTGGAATGTGGAGACTTTGACAGACCTTTCTAGTGAAGGACACAGG 1196
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1139 TTTCTTGTTGAACGGTGGAATGTGGAGACTTTGTCAGGCCTTTCTAGTGAAGGACACAGG 1198
Query 1197 GCCCAGGACTTTGTCTGCGGACTACCTGCAAGAATCCGTAAAATTGAAGAGAGAGCTCAA 1256
|| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1199 GCTCAGGACTTTGTCTGCGGACTTCCTGCAAGAATCCGCAAAATTGAAGAGAGAGCTCAA 1258
Query 1257 GGAAGAGCCAAAGAAGCTGCCAAAAACATACCATTCAGCTGGATATTTGGTCGAAATATC 1316
||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||
Sbjct 1259 GGAAGAGCCAAAGAAGCAGCCAAAAACATACCATTCAGCTGGATTTTTGGTAGAAATATT 1318
Query 1317 AGGGCTTAAGAAGTTTACTACACAATTCTC-T-TT-C-CAATTATCCCAAGTAAGTCATA 1372
||||||||| |||||||||||||||||||| | || | || | |||||||||||| ||||
Sbjct 1319 AGGGCTTAAAAAGTTTACTACACAATTCTCCTCTTTCGCACT-ATCCCAAGTAAGCCATA 1377
Query 1373 AAGGTCTTCACCAACCATTTCACCAATGAAGGACCAGTTTTTAAGACCACGAAAGTTCAT 1432
|||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1378 AAGGTCTTCACCAACCATCTCACCAATGAAGTACCAGTTTT-AAGACCACGAAAGTTCAT 1436
Query 1433 TTGAAT--GT---GT--TTT-GTTTTATAC--GGAACATTGTAGATAAAGTTATGTGGTT 1482
| |||| || || ||| ||||| ||| ||||||||||||||||||||||||||||
Sbjct 1437 T-GAATATGTTTTGTACTTTTGTTTTTTACATGGAACATTGTAGATAAAGTTATGTGGTT 1495
Query 1483 AGGTTATGTTTCTTGTTTGAATCAGTCAAGACCAAAGAAAAT 1524
||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1496 AGGTTATGTTTCTTGGTTGAATCAGTCAAGACCAAAGAAAAT 1537
> Ahg941117 jgi|Araly1|941117|scaffold_601661.1
Length=1237
Score = 1253 bits (678), Expect = 0.0
Identities = 1053/1231 (86%), Gaps = 37/1231 (3%)
Strand=Plus/Plus
Query 119 GTTAGAGAAGAATCAAATGGCGATGGCTATGGATCGGATCG---TCTTCTC--CC-CTTC 172
||| |||||||| | ||||| ||||||||||||||||||| | ||||| || | ||
Sbjct 7 GTT-GAGAAGAAAC-AATGGTTATGGCTATGGATCGGATCGCTTTGTTCTCTTCCTCATC 64
Query 173 ATCT-TACGTCTATCGTCCTTGTCAAGCT-AGGGGATCCAGATCTTCCAGAGTTTCCATG 230
|||| | || ||||| ||| ||| || | || |||| ||| |||||||||||||||
Sbjct 65 ATCTGTTTATC-ATCGTTCTTCTCATTCTCA-TGGCTCCAAATCATCCAGAGTTTCCATG 122
Query 231 GCTTCTACGATTCGCTCTGCGA--CTACAGAGGTTACGAATGGAAGGAAACTGTATATCC 288
||||| || ||||| | | ||| ||||||| | ||| ||||||||||||| ||||||||
Sbjct 123 GCTTCCACTATTCG-T-TCCGACTCTACAGACGATACAAATGGAAGGAAACCGTATATCC 180
Query 289 CTCC-CAGAGAGGTGCATGTCCAAGTCAAACATTCAATGCCGCCACAAAAGTTAGAGATC 347
|||| | ||||||| ||| | ||||| ||| |||||||||| ||||||||| | |||||
Sbjct 181 CTCCTC-GAGAGGTTCATCTTCAAGTGAAATATTCAATGCCACCACAAAAGCTGGAGAT- 238
Query 348 TTT-AAGTCTTTAGAAGGATGGGCTGATGA-AACCCTGTTGACTTATTTAAAACCTGTTG 405
||| ||||| ||||||||||||||| |||| || | |||||||| || ||||||| ||||
Sbjct 239 TTTCAAGTCCTTAGAAGGATGGGCTAATGAGAA-CTTGTTGACTAATCTAAAACCAGTTG 297
Query 406 AGAAATCGTGGCAGCCTACCGATTTTCTTCCC-GAACCTGAGTCGGAAGGATTCTATGAC 464
||||||| |||||||| || |||| || |||| ||||||||||| |||||||||| ||||
Sbjct 298 AGAAATCATGGCAGCCAACAGATTATC-TCCCTGAACCTGAGTCAGAAGGATTCTTTGAC 356
Query 465 CAAGTCAAGGAGCTAAGGGAAAGGTGCAAGGAACTTCCTGATGACTATTTTGTGGTGCTT 524
||||| |||||| |||| |||||||| ||||| ||| |||||||||| ||||| ||||||
Sbjct 357 CAAGTTAAGGAGTTAAGAGAAAGGTGTAAGGAGCTTACTGATGACTACTTTGTAGTGCTT 416
Query 525 GTTGGGGATATGATCACTGAAGAAGCACTTCCTACTTACCAGACCATG-TTGAACACATT 583
||||| ||||||||||| || |||||||| || ||||| ||||| ||| || || |||||
Sbjct 417 GTTGGTGATATGATCACAGAGGAAGCACTCCCGACTTATCAGACTATGATT-AATACATT 475
Query 584 GGATGGTGTTAGGGATGAGACAGGAGCTAGTCCTACTCCTTGGGCTATATGGACCAGGGC 643
||| || ||||| |||||||| ||||| |||||||||||||||||| ||||||| |||||
Sbjct 476 GGACGGGGTTAGAGATGAGACGGGAGCAAGTCCTACTCCTTGGGCTGTATGGACAAGGGC 535
Query 644 TTGGACTGCTGAGGAGAATAGACATGGGGATCTCCTTAACAAGTATCTTTATCTGTCTGG 703
|||||||| || |||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 536 CTGGACTGCCGAAGAGAATAGACATGGTGATCTTCTTAACAAGTATCTTTACCTGTCTGG 595
Query 704 TCGGGTAGACATGAGGCAGATTGAAAAGACTATTCAGTACCTGATTGGTTCTGGAATGGA 763
|| ||||||||||| ||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 596 ACGAGTAGACATGAGACAGATTGAAAAAACTATTCAATACCTCATTGGTTCTGGAATGGA 655
Query 764 TCCAAAAACTGAAAACAACCCTTACTTGGGTTTCATCTACACATCATTTCAAGAAAGAGC 823
|||||||||||||||||| |||||| |||| ||||||||||| || ||||||||||||||
Sbjct 656 TCCAAAAACTGAAAACAATCCTTACCTGGGATTCATCTACACTTCTTTTCAAGAAAGAGC 715
Query 824 GACCTTCATCTCCCATGGAAACACTGCCAGACTGGCGAAA-GATCGTGGAGATTTGAAAC 882
|| ||||||||||||||||||||||| | |||||| ||| |||| |||||| |||||||
Sbjct 716 AACATTCATCTCCCATGGAAACACTGCTAAACTGGC-AAAGGATCTTGGAGACTTGAAAC 774
Query 883 TTGCGCAGATATGCGGGACCATTGCTGCTGATGAGAGGCGTCATG-AGACTGCTTACACC 941
|||| ||||| || || ||||||||||||||||||||||| |||| | || || ||||||
Sbjct 775 TTGCTCAGATTTGTGGCACCATTGCTGCTGATGAGAGGCGCCATGAACAC-GCCTACACC 833
Query 942 AAGATTGTAGAGAAGCTCTTTGAAATTGACCCTGATGGCACGATCTTGGGCCTGGCTGAT 1001
||||||||||| ||||| ||||||||||| |||||| ||| ||| ||||| | |||||
Sbjct 834 AAGATTGTAGAAAAGCTATTTGAAATTGATCCTGATACCACAATCGTGGGCTTTGCTGAC 893
Query 1002 ATGATGAAGAAAAAGATATCAATGCCTGCACATTTAATGTATGATGGCCAAGATGATAAC 1061
||||||||||||||||| ||||||||||| ||||| ||||| ||||| | ||||||||
Sbjct 894 ATGATGAAGAAAAAGATCTCAATGCCTGCTCATTTGATGTACGATGGTCGTGATGATAAT 953
Query 1062 CTGTTTGAGCACTTCTCAACCGTTGCCCAGAGGCTCGGTGTCTACACTGCCAAG-GACTA 1120
|| ||||| |||||||| |||| ||||||||||| ||||||||||||||| || |||||
Sbjct 954 CTATTTGATCACTTCTCGTCCGTGGCCCAGAGGCTTGGTGTCTACACTGCC-AGAGACTA 1012
Query 1121 TGCTGATATTCTGGAGTTTCTTGTTG-AACGGTGGAATGTGGAGACTTTGACAGACCTTT 1179
||||||||| ||| | ||||||| || || ||||||||||||||| ||| |||||||||
Sbjct 1013 TGCTGATATACTGCAATTTCTTG-TGCAAAGGTGGAATGTGGAGAAGTTGTCAGACCTTT 1071
Query 1180 CTAGTGAAGGACACAGGGCCCAGGACTTTGTCTGCGGACTACCTGCAAGAATCCGTAAAA 1239
||||||||||||||||||||||||||| | |||| ||| | ||||| || ||||| |||
Sbjct 1072 CTAGTGAAGGACACAGGGCCCAGGACTATCTCTGTGGATTGCCTGCTAGGATCCGCAAAC 1131
Query 1240 TTGAAGAGAGAGCTCAAGGAAGA-GCCAAAGAAGCTGCCAAAAACATACCATTCAGCTGG 1298
||||||| ||||||||||| ||| || ||||||||||| |||||||||||||||||||||
Sbjct 1132 TTGAAGAAAGAGCTCAAGGGAGAAGC-AAAGAAGCTGCAAAAAACATACCATTCAGCTGG 1190
Query 1299 ATATTTGGTCGAAATATCAGGGCTTAAGAAG 1329
|| ||||||||||| |||||||||||| |||
Sbjct 1191 ATTTTTGGTCGAAAGATCAGGGCTTAA-AAG 1220
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62658453025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5