BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02650.1
Length=2057
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903067 jgi|Araly1|903067|Al_scaffold_0003_195 2645 0.0
Ahg913404 jgi|Araly1|913404|Al_scaffold_0001_3658 167 3e-40
Ahg907825 jgi|Araly1|907825|Al_scaffold_0002_906 115 1e-24
> Ahg903067 jgi|Araly1|903067|Al_scaffold_0003_195
Length=3276
Score = 2645 bits (1432), Expect = 0.0
Identities = 1644/1741 (94%), Gaps = 36/1741 (2%)
Strand=Plus/Plus
Query 112 ATCGCAAAATGCGTCTCGGAATCTCGCTGTTACTCGAATCTCGAAGAAGAAGACCCAGAC 171
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1539 ATCGCAAAATGCGTCTAGGAATCTCGCCGTTACTCGAATCTCGAAGAAGAAGACCCAGAC 1598
Query 172 GACT-CATTCGCTTACCTCTCTTTCGAGATTTTCATATCTCGAGTCGTCTGGAAATGCTT 230
|||| || ||||| ||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1599 GACTCCA-TCGCTAACCTCTCTTTCGAGATTCTCATATCTCGAGTCGTCTGGAGATGCTT 1657
Query 231 CTGTTCGAAACATCAGGTTCTTCTCCACGAGCCCTCCTACGGAAGAGAACCCAGTCTCGT 290
|| ||||||||||||||||||||| ||||||||||||| |||||||||||||| || |
Sbjct 1658 CTAACCGAAACATCAGGTTCTTCTCCGCGAGCCCTCCTACAGAAGAGAACCCAGTTTCTT 1717
Query 291 TACCTG-CCGATGAGATCCCAATCTCGTCAGCCGCAGAGCTTACCCTTGAAGAATCGGTT 349
|||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1718 TACC-GACGGATGAGATCCCAATCTCGTCAGCCGCAGAGCTTACCCTTGAAGAATCGGTT 1776
Query 350 GCTTCCGCTTTGGGATTTTCAGAAAGTGGCGA------T-T--ATGGTGGTACTTCCGTG 400
|||||||||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct 1777 GCTTCCGCTTTGGGATTTTCAGAAAGTGGCGATTTTGGTGTAAATGGTGGTACTTCCGTG 1836
Query 401 GAAG-C--T-GT--TG---GTGAAGATGGAGATTCAGAGATTGTTGCAATAGAAAACGAG 451
|||| | | || || |||||||||||||||||||||||||||||| |||||||||
Sbjct 1837 GAAGCCGTTGGTGGTGTTTCTGAAGATGGAGATTCAGAGATTGTTGCAATTGAAAACGAG 1896
Query 452 G-T-------T-TACCAATTTGATGACGAAAAGCTGGAATCTGTACTGTCTTTGTTACGG 502
| | | ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1897 GTTAGCGAGGTGTACCAATTTGATGACGAAAAGTTGGAATCTGTACTGTCTTTGTTACGG 1956
Query 503 AGTGATGAAGAATCCTTGGAGTTTGGTCTTAATGCGCTTAATGTCGATTTACACTTAGAT 562
||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1957 AGTGATGAAGAGTCCTTGGAGTTTGGTCTTAATGCGCTTAATGTTGATTTACATTTAGAT 2016
Query 563 TTTGTGGTAAGAGTGTTTGAATCCCCAGGAATTTCAGGTAAGAATTTGATTAGGTTTTTG 622
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2017 TTTGTGGTAAGAGTGTTTGAATCCCCAGGAATTTCCGGTAAGAATTTGATTAGGTTTTTA 2076
Query 623 AAGTGGGCAACTCAGA-ATGAAGAGATTACTGTTACCACCTCGCTTGTAGAATCTCTTCT 681
|||||||||||| ||| | ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 2077 AAGTGGGCAACTGAGAGA-GAAGAGATTACTGTTACAACCTCACTTGTAGAATCTCTTCT 2135
Query 682 TGTAGCAATTGCTAGTGATACACGTAGAATGGATGCTTATGGTTTGTGGGATTTGGTTAA 741
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2136 TGTAGCAATTGCTGGTGATACACGTCGAATGGATGCTTATGGTTTGTGGGATTTGGTTAA 2195
Query 742 GGAGATAGGTGAGAA--AGAG-AGTTGTGGTGTTTTGAATTTGGAGATATTGAATGAACT 798
|||||| |||||||| |||| ||| || ||||||||||||||||||||||||||||| |
Sbjct 2196 GGAGATTGGTGAGAAGGAGAGTAGTAGTAGTGTTTTGAATTTGGAGATATTGAATGAATT 2255
Query 799 GATTGCCTTGTTTGGGAAACTTGGTAAATCCAAAGCTGCTTTTGATGTGTTTAGTAAGAC 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2256 GATTGCCTTGTTTGGGAAACTTGGTAAATCCAAAGCTGCTTTTGATGTGTTTAGTAAAAC 2315
Query 859 CGAAGAGTTTGGGTTTACTCCGAATGCGAAAACATATTATTTGACACTGGAGGCGCTTTG 918
|| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2316 CGCAGAGTTTGGTTTTACTCCGAATGCGAAAACGTATTATTTGACACTGGAGGCGCTTTG 2375
Query 919 TAAGCGGTCGTTTATGGATTGGGCATGTTCTGTATGTGAGAAAATGCTTAAGAGTGGTGT 978
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2376 TAAGCGGTCGTTTATGGATTGGGCATGCTCTGTATGTGAGAAAATGCTTAAGAGTGGTGT 2435
Query 979 GTTATCGGAGGGAGAACAGATGGGTAACATCATAACTTGGTTTTGTAAGGAAGGGAAGGC 1038
|||| | ||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 2436 GTTACCTGAGGGAGAACAGATGGGTAACATCATATCTTGGTTTAGTAAGGAAGGGAAGGC 2495
Query 1039 CGAAGAGGCTTATTCGGTTTATGAATTGGCAAAGACGAAAGAGAAATCTTTGCCTCCTAG 1098
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 2496 CGAAGAGGCTTATTCGGTTTACGAATTGGCAAAGACGAAAGAGAAATCTCTGCCTCCTAG 2555
Query 1099 ATTTGTGGCTACTCTGATAACTGCACTCTGCAAGAATGATGGGACTATCACGTTTGCTCA 1158
|| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 2556 ATCTGTGGCTACTCTGATAAGTGCTCTCTGCAAGAATGATGGGACTATCACGTTTGCTCA 2615
Query 1159 GGAGATGTTGGGTGATTTATCTGGAGAAGCTAGACGACGTGGGATAAAACCATTTTCTGA 1218
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2616 GGAGATGTTGGGTGATTTATCTGGAGAAGCTAGGCGACGTGGGATAAAACCATTTTCTGA 2675
Query 1219 TGTTATCCATAGTTTATGCAGAATGAGAAATGTTAAAGACGCTAAAGCTTTGCTTTTAGA 1278
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 2676 TGTTATCCATAGTTTATGCAGGATGAGAAATGTTAAAGACGCTAAAGCTTTGCTTTTGGA 2735
Query 1279 TATGATTTCTAAAGGGCCTGCTCCTGGGAATGCGGTTTTTAATTTGGTTGTCCATGCTTG 1338
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2736 TATGATTTCTAAAGGGCCTGCTCCTGGGAATGCGGTTTTTAATTTGATTGTCCATGCTTG 2795
Query 1339 TTCGAAAACTGGAGATCTGGATGAAGCAAAAGAAGTTTTAAAGTTGATGGAGAGTAGAGG 1398
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 2796 TTCGAAAACTGGAGATCTGGATGAAGCAAAAGAGGTTTTGAAGTTGATGGAGAGTAGAGG 2855
Query 1399 TTTGAAACCAGATGTGTACACATACACTGTCATCATTAGCGGTTATGCTAAAGGAGGGAT 1458
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 2856 TTTGAAACCAGATGTGTACACATACACTGTCATCATTAGTGGTTATGCTAAAGGAGGGCT 2915
Query 1459 GATGGATGAAGCTCAAGAGATTCTCGCAGAGGCGAAAAAGAAACATAAGAAGCTTAGTCC 1518
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2916 GATGAATGAAGCTCAAGAGATTCTCGCAGAGGCGAAAAAGAAACATAAGAAGCTTAGTCC 2975
Query 1519 TGTGACATATCACGCACTCATCCGAGGCTATTGCAAGATTGAAGAATATGACGAAGCTCT 1578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2976 TGTGACATATCACGCACTCATCCGAGGCTATTGCAAGATTGAAGAATATGACGAAGCTCT 3035
Query 1579 GAAACTCTTGAACGAAATGGATCGTTTCGGGGTGCAGCCTAATGCTGATGAGTACAATAA 1638
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3036 GAAACTTTTGAAAGAAATGGATCGTTTCGGGGTGCAGCCTAATGCTGATGAGTACAATAA 3095
Query 1639 GCTGATACAATCATTTTGCCTCAAAGCTCTGGATTGGGAAAAAGCAGAGGTGCTGTTTGA 1698
||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 3096 GCTGATACAGTCATTTTGCCTCAAAGCTTTGGATTGGGAAAAAGCAGAGATGCTGTTTGA 3155
Query 1699 GGAGATGAAGCAGAAAGGCTTGCACTTGAATGCGATCAGTCAGGGGCTTATAAGGGCAGT 1758
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 3156 GGAGATGAAGCAGAAAGGCTTGCACTTGAATGCAATTAGTCAGGGGCTTATAAGGGCAGT 3215
Query 1759 TAAAGAGATGGAATCTGAAGCCAAGGTAACGGAAGATGGCAACTTACTTGCTGAAGCATA 1818
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 3216 TAAAGAGATGGAATCTGAAGCCAAGGTAACGGAAGATGACAACTTACTTGCTGAAGCATA 3275
Query 1819 G 1819
|
Sbjct 3276 G 3276
> Ahg913404 jgi|Araly1|913404|Al_scaffold_0001_3658
Length=438
Score = 167 bits (90), Expect = 3e-40
Identities = 108/117 (92%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 699 ATACACGTAGAATGGATGCTTATGGTTTGTGGGATTTGGTTAAGGAGATAGGTGAGAAAG 758
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 137 ATACACGTAGAATGGATGCTTATGGTTTGTGGGATTTGGTTAAGGAGATTGGTGAGAAGG 196
Query 759 AGAGTTGTGGTGTTTTGAATTTGGAGATATTGAATGAACTGATTGCCTTGTTTGGGA 815
||| | || |||||||||| |||||||||||||| ||| |||||||||||| |||||
Sbjct 197 AGAATAGTAGTGTTTTGAACTTGGAGATATTGAAAGAATTGATTGCCTTGTGTGGGA 253
> Ahg907825 jgi|Araly1|907825|Al_scaffold_0002_906
Length=324
Score = 115 bits (62), Expect = 1e-24
Identities = 88/100 (88%), Gaps = 3/100 (3%)
Strand=Plus/Plus
Query 710 ATGGATGCTTATGGTTTGTGGGATTTGGTTAAGGAGATAGGTGAGAAAGAGAGTTGTGGT 769
|||||||||||||||||||||||||||||||||||||| |||||||| |||| | || ||
Sbjct 1 ATGGATGCTTATGGTTTGTGGGATTTGGTTAAGGAGATTGGTGAGAAGGAGAATGGTAGT 60
Query 770 GTTTT---GAATTTGGAGATATTGAATGAACTGATTGCCT 806
||||| ||| || ||||| ||||||||| |||||||||
Sbjct 61 GTTTTTTTGAACTTAGAGATTTTGAATGAATTGATTGCCT 100
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77361287595
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5