BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02660.1
Length=1738
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477507 jgi|Araly1|477507|fgenesh2_kg.3__208__AT3G02660.1 2597 0.0
> Ahg477507 jgi|Araly1|477507|fgenesh2_kg.3__208__AT3G02660.1
Length=1628
Score = 2597 bits (1406), Expect = 0.0
Identities = 1558/1632 (95%), Gaps = 7/1632 (0%)
Strand=Plus/Plus
Query 110 AAATTTATGGCATATGCAACAGGAATAACGTTTGCCTCAAGGAGTATTTTGCCTATTTGT 169
|||||||||||||||||||||||||| ||| |||| ||||||||||| |||||||| |||
Sbjct 1 AAATTTATGGCATATGCAACAGGAATGACGCTTGCTTCAAGGAGTATCTTGCCTATGTGT 60
Query 170 TCCAGAACCTT-CTTATCTCCCTTGCGTGTCGCTTCTTTACTCGTCTTTCCTGAGAAATC 228
||||||| ||| |||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 61 TCCAGAA-CTTGCTTATCTCCCTTACGTGTCGCTTCTTTACTCGTTTTTCCTGAGAAATC 119
Query 229 ATCTGCAACTTTCTTCAGAAGGGTCCAAGTTCCTCACCTTTTTTCCACTTCTACTACTAC 288
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 120 ATCCGCAACTTTCTTCAGAAGGGTCCAAGTTCCTCACCTTTTCTCCACTTCTACTACTCC 179
Query 289 TCTGTTCTCTTCTGTTAAGTGTTCAATTCATTCTACTTCATCTCCTGAGACAGAGAATCA 348
|||||| || ||||||||||| |||||||| ||||||||||||| ||||||||| |||||
Sbjct 180 TCTGTTTTCCTCTGTTAAGTGCTCAATTCAATCTACTTCATCTCTTGAGACAGAAAATCA 239
Query 349 AGCTGTTTTTCGCCCTAATGTAGTCGATATACTTGAAGAAAGAGGTCTCCTCGAGTCAAT 408
|||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 240 AGCTGTTTCTCGCCCTAATGTTGTCGATATACTTGAAGAAAGAGGTCTCCTTGAGTCGAT 299
Query 409 CACAAGCGAGAATCTCAGGTCAGCTTGTTCTGATCCTAAAGTAGCTCCTTTAAGGGTCTA 468
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 300 CACAAGCGAAAATCTCAGGTCAGCTTGTTCTGATCCTAAAGTAGCTCCTCTAAGGGTCTA 359
Query 469 CTGTGGGTTTGATCCAACGGCTGAGAGTTTACACTTGGGTAATCTACTTGGTATCATTGT 528
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 360 CTGCGGGTTTGATCCAACGGCTGAGAGTTTACACTTAGGTAATCTACTTGGTATCATTGT 419
Query 529 GCTTTCTTGGTTCCAAAGATGTGGACATCAAGCCGTTGGTTTAATTGGTGGTGCCACGGG 588
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 GCTTTCTTGGTTCCAAAGATGTGGACATCAAGCTGTTGGTTTAATTGGTGGTGCCACGGG 479
Query 589 ACGGGTTGGTGACCCATCTGGTAAAAGCTTAGAAAGACCTGAGCTTGACGCTGATACACT 648
||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 480 ACGAGTTGGTGACCCATCTGGTAAAAGCCTAGAAAGACCTGAGCTTGGCGCTGATACACT 539
Query 649 GGAGAAAAATATTGCGGGGATTACAAA-AATCATTATCAAGATTCTAGGTAGTAATCCGA 707
||||||||| ||||| ||||||| ||| |||||||||||||||||| ||| | |||||||
Sbjct 540 GGAGAAAAACATTGCCGGGATTA-AAAGAATCATTATCAAGATTCTGGGTGGCAATCCGA 598
Query 708 GTCCCGGTGGCTCTTACGTGATTTTTAATAACTATGACTGGTGGAAAGATATGACAATGC 767
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GTTCCGGTGGCTCTTACGTGATTTTTAATAACTATGACTGGTGGAAAGATATGACAATGC 658
Query 768 TCGACTTTCTGAACAAAGTCGGTAGGTTTGCTAGGGTTGGTACTATGATGGCAAAGGAGA 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TCGACTTTCTGAACAAAGTCGGTAGGTTTGCTAGGGTTGGTACTATGATGGCAAAGGAGA 718
Query 828 GTGTGAAGAAGAGATTAGAATCAGAGCAAGGTATGAGCTACACCGAGTTCACTTATCAGT 887
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 719 GTGTGAAGAAGAGATTAGAATCAGAACAAGGTATGAGCTACACCGAGTTCACTTATCAGT 778
Query 888 TGTTGCAAGCCTATGATTTTCTTCACCTGTTCAAGAACGAAGGGATCAATGTTCAGATAG 947
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TATTGCAAGCCTATGATTTTCTTCACCTGTTCAAGAACGAAGGGATCAATGTTCAGATAG 838
Query 948 GTGGCAGTGATCAATGGGGGAATATAACAGCTGGAACTGATTTGATCAGGAAGATTCTCC 1007
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 839 GTGGTAGTGATCAATGGGGGAATATAACAGCTGGAACTGATTTGATCCGGAAGATTCTCC 898
Query 1008 AAGCAGAAGAAGCGGCTTACGGGCTAACATTTCCTCTCCTACTGAAAAACGATGGAACGA 1067
||||||||||||| |||||||||||||||||||| |||||| ||||||||||||| ||||
Sbjct 899 AAGCAGAAGAAGCTGCTTACGGGCTAACATTTCCCCTCCTATTGAAAAACGATGGGACGA 958
Query 1068 AATTCGGGAAATCAGAAGATGGAGCAATCTGGCTATCTCCTTCGATGTTATCGCCTTATA 1127
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 959 AATTCGGGAAATCAGAAGATGGAGCAATCTGGCTATCTCCTTCGATGCTATCGCCTTATA 1018
Query 1128 AGTTCTATCAGTACTTCTTTTCAGTTCCAGACGTTGATGTGATACGCTTCTTAAAGACAT 1187
|||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 1019 AGTTTTATCAGTACTTCTTCTCAGTTCCAGACGTTGACGTGATACGCTTCTTAAAGAC-T 1077
Query 1188 -TAACATTTCTGAGCTTGGATGAGATAAAGATCTTGGAAGATCAAATGAGCAAACCCGGC 1246
|||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1078 CTAACTTTTCTGAGTTTGGATGAGATAAAGATCTTGGAAGATCAAATGACCAAACCCGGG 1137
Query 1247 TATGTTCCCAACACCGCACAAATCAAACTCGCTGAAGAAGTAACCAGATTCGTACATGGC 1306
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1138 TATGTTCCCAACACCGCACAAATCAAACTCGCTGAAGAAGTAACCAGATTTGTACATGGC 1197
Query 1307 GAAGAGGGTTTGAAAGAAGCCATTAAAGCAACAGAAGCTTTAAGACCAGGTGCTGAGACA 1366
|||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1198 GAAGAGGGCTTGAAGGAAGCCATTAAAGCAACAGAAGCTTTAAGACCAGGAGCTGAGACA 1257
Query 1367 AAGCTTGATTGGAACTTGATTGAGAGAATAGCAGAGGATATACCTTCTTGCTCACTGCCT 1426
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 AAGCTTGATTGGAACTTGATTGAGAGAATAGCAGAGGATATACCTTCTTGCTCACTGCCC 1317
Query 1427 ATTGATCGAGTGTCGGGTTTATCGATTGTGGATCTATCGGTTTCTGCAGGTTTGTTTGAG 1486
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1318 ATTGATCGAGTGTCGGGTTTATCGATTGTGGATCTATCAGTTTCTGCGGGTTTGTTTGAG 1377
Query 1487 AGCAAATCTGCTGCGAGGAGAATGTTGAAGCAAGGTGGGTTTTATATGAACAATGAGAGA 1546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 AGCAAATCTGCTGCGAGGAGAATGTTGAAGCAAGGTGGGTTTTATATGAACAATGAGAGA 1437
Query 1547 GTTGATGATGAGAATAAGAGAGTGGACGAAGAGGATATTGTTGAAGGGAGAGGTCTTGTT 1606
|||||||||||||| |||||||| || |||||||||||||||||||||| ||||||||||
Sbjct 1438 GTTGATGATGAGAACAAGAGAGTTGAAGAAGAGGATATTGTTGAAGGGAAAGGTCTTGTT 1497
Query 1607 CTATCAGCAGGCAAGAAGAATAAAGTGGTCGTTAGAATTTCCTGAttttttttCATAACA 1666
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||
Sbjct 1498 CTATCAGCAGGCAAGAAGAATAAAGTGGTCGTTAGAATTTCCTGAGATTTTT-CATGACA 1556
Query 1667 AATCTGTACTCATTTTATTACGTATTTTGTTATGAACTAACGTTGAATCACTAATGGTTT 1726
||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct 1557 AATCTGTACTCATTTTATTACGTATTTTGTTATGAACCAGCATTGAATCACTAATGGTTT 1616
Query 1727 ATAACTTTTCTC 1738
||||||||||||
Sbjct 1617 ATAACTTTTCTC 1628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65210499440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5