BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02670.1
Length=847
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903069 jgi|Araly1|903069|Al_scaffold_0003_197 176 2e-43
> Ahg903069 jgi|Araly1|903069|Al_scaffold_0003_197
Length=666
Score = 176 bits (95), Expect = 2e-43
Identities = 141/161 (88%), Gaps = 12/161 (7%)
Strand=Plus/Plus
Query 385 GGTCTTCCCGGTATTCCTGGTTCCCCTGGCTTTAGGCTTCCGTTTCCATTCCCGTCATCA 444
||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 319 GGTATTCCCGGTATTCCTGGTTCCCCTGGCTTTAGGCTTCCGTTTCCATTTCCATCATCA 378
Query 445 CCTGGAGGAGGAAGTATTCCCGGTATTCCCGGTTCGCCTGGTTTTAGACTTCCGTTTCCA 504
|| |||||| |||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 379 CC---AGGAGG---TATTCCCGGTATTCGTGGTTCCCCTGGCTTTAGACTTCCGTTTCCA 432
Query 505 TTCCC-TC--CA---TCAGGAGGAGGTATTCCCGGTCTTCC 539
||||| || || ||||||||||||||||||||| ||||
Sbjct 433 TTCCCATCATCACCATCAGGAGGAGGTATTCCCGGTATTCC 473
Score = 80.5 bits (43), Expect = 2e-14
Identities = 70/82 (85%), Gaps = 6/82 (7%)
Strand=Plus/Plus
Query 228 TATTCCCGGTTCTCCTGGCTTTAGACTTCCGTTTCCATTCCCGTCATCACC-T--GGAGG 284
||||| ||||| ||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 396 TATTCGTGGTTCCCCTGGCTTTAGACTTCCGTTTCCATTCCCATCATCACCATCAGGAGG 455
Query 285 ---TAATCCCGGTATTCCCGGT 303
|| |||||||||||| |||
Sbjct 456 AGGTATTCCCGGTATTCCTGGT 477
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31337037774
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5