BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02680.1
Length=1855
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477508 jgi|Araly1|477508|fgenesh2_kg.3__209__AT3G02680.1 2512 0.0
> Ahg477508 jgi|Araly1|477508|fgenesh2_kg.3__209__AT3G02680.1
Length=1707
Score = 2512 bits (1360), Expect = 0.0
Identities = 1547/1636 (95%), Gaps = 17/1636 (1%)
Strand=Plus/Plus
Query 1 ATGGTTTGGGGTCTCTTTCCCGTTGATCCTCTTTCAGGTGAAGATAAATACTATATCTTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGTTTGGGGTCTCTTTCCCGTTGATCCTCTTTCAGGTGAAGATAAATACTACATCTTT 60
Query 61 TCAAAGGGTATTTACAAGGTTGGTCGAAAAGGATGTGATATAATTATCAATAAGGATAAG 120
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 TCAAAGGGTATTTACAAGATTGGTCGAAAAGGATGTGATATTATTATCAATAAGGATAAG 120
Query 121 GGGGTATCTAGGATCCACGCTGAGTTAACTTTTGATGCAACAACTGTTTCAACCTCTCGG 180
||||||||||||||||||||||||||||| ||| || | |||||||||||||
Sbjct 121 GGGGTATCTAGGATCCACGCTGAGTTAAC-TTT--TG-----A----TTCAACCTCTCGG 168
Query 181 AGGAACAAGTCTTCTTCAGATACATCATCCTTTGTTATCCGTGTCAAAGATTGTTCAAAG 240
||| |||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 169 AGGGACAA---ATCTTCAGATACCTCCTCCTTTGTTATCCGTGTCAAAGATTGTTCAAAG 225
Query 241 TATGGGACTTTTGTCAAAACTGACCTGGGGACAAAAGATAAAGTTCATGAGCTATCTAAT 300
||||| || ||| ||||||||||||||||||||||| | ||||||||||||||| |||||
Sbjct 226 TATGGCACCTTTATCAAAACTGACCTGGGGACAAAATACAAAGTTCATGAGCTACCTAAT 285
Query 301 AAGGAGAAAATTCTCCAAGATGGAGATGTTATCGCGTTTGGTACAGGTTCTGCAATTTAC 360
||||| |||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 286 AAGGATAAAATTCTCCAAGATGGAGATGTTATCGCGTTTGGTACAGGTTCAGCTACTTAC 345
Query 361 AGGTTGTCCTTAATTCCGCTTGTTTTTTACTTGTGCCCTTCCTCTGAGACCTTTAAGGTG 420
||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct 346 AGGTTGTCCTTAATTCCGCTTGTATTTTACTTCTGCCCTTCCTCTGAGACGTTTAAGGTG 405
Query 421 GATCAGCCTGTACAAGATGCAGTTTCATCAATTGGTGCTCGTATTTCTCCTACATTGAGT 480
|||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 406 GATCAGTCGGTACAAGATGCAGTTTCATCAATTGGTGCTCGTATTTCTCCTACCTTGAGT 465
Query 481 GAGGAGTGCACTCATGTGCTTCTTGAGCCACGTATGCAAGTGAATGAAGCTCTGATCAAT 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 466 GAGGAGTGCACTCATGTGCTTCTTGAGCCACGTATGCAAGTGAATGAAGCTCTGGTCAAT 525
Query 541 GCAATTTTAGCCaaaaaaaCAATCATTTTGACAAACTGGGTTATGCTTCTCGCAGAGAAA 600
|||||||||||||||||| |||||||||||||||| ||||| | ||||||||||||||||
Sbjct 526 GCAATTTTAGCCAAAAAACCAATCATTTTGACAAATTGGGTGAAGCTTCTCGCAGAGAAA 585
Query 601 AGTATCTGCAGCGAAATTCCTGGATACAGCCAGTACAGACCATCAGTGATGGTTGAAGAA 660
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 AGTATCTGCAGCGAATTTCCTGGATACAGCCAGTACAGACCATCAGTGATGGTTGAAGAA 645
Query 661 GCTTTGGTGGATGTACTAGAATTAAACGTCCGTGAAAAATGTCTAGAAGGATTTACCTTT 720
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 646 GCTTTGGTGGATGTACTAGAATTAAACGTCCGTGAAAAATGTCTAGAAAGATTTACCTTT 705
Query 721 GTCTTGGAACCAACAGACACGTATAGATTTGGTTGCAGCTTCCCATCTTTACTTGAAGTA 780
|| ||||||||| |||||| ||| |||||||||||||||||||||||||||||| |||||
Sbjct 706 GTGTTGGAACCACCAGACATGTACAGATTTGGTTGCAGCTTCCCATCTTTACTTAAAGTA 765
Query 781 TGTGGTGCAGAGACCGTTACCATAGAAGACATTAGCTCCATGAGTCAGGATTCTCAGTTT 840
|||||||||||||| |||||||| | |||| ||||||||||||||||||||||||||| |
Sbjct 766 TGTGGTGCAGAGACTGTTACCATTGCAGACGTTAGCTCCATGAGTCAGGATTCTCAGTAT 825
Query 841 GGAGAGATTAATCGCATGATATGTGTCATCCCAAAAAGTGCAGGAGACAAATTTGGCCGT 900
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 826 GGAGAAATTAATCGCATGATATGTGTCATCCCAAAAAGTTCAGGAGACAAATTTGGCCGT 885
Query 901 TTCAAGCATCTCAGTTTGTTATCTAGAGTGAACGAGATGGATTTAGTATGCGCCGTCTTT 960
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 886 TTGAAGCATCTCAGTTTGTTATCTAGAGTGAACGAGATGGATTTAGTATGCGCTGTCTTT 945
Query 961 TCCGGAAATCTACCTTCGACTTCACTGATACCACCATCCGTTGTAATTTCATCCTCGTGC 1020
||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 946 TCCGGCAATCTACCTTCAACTTCACTGATACCACCTTCCGTTGTAATTTCATCCTCATGC 1005
Query 1021 TCTACAGATGAGACAGTGGTAGCGGATTCTGAAGCCGAAGAGGAAGAAACAACATCGTCT 1080
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1006 TCTACGGATGAGACAGTGGTAGCGGATTCTGATGCCGAAGAGGAAGAAACAACATCGTCT 1065
Query 1081 GTTCATATGATTGATGCTACTGAAAAGGCAGAAACGCCAGAGAAGCCTGCTGCTATTGTA 1140
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||
Sbjct 1066 GTTCATATGATTGATGCTACTGAAAAGGCAGAAACACCAGAGAAGCCTGCAGCTATTATA 1125
Query 1141 ATAGAGGATAGCCCTGTTACTATATTGGAAGAAACT-TCGAATTTGAACGAGTTTAAAAG 1199
||||||||||| |||||||| ||||||||||||||| | ||||||||| |||||||||||
Sbjct 1126 ATAGAGGATAGTCCTGTTACGATATTGGAAGAAACTAT-GAATTTGAATGAGTTTAAAAG 1184
Query 1200 CGTGAACTTATTAGCGGATACAGAAAGTAGAGGCCACATGGATGAAAAGAACTCAAGTGA 1259
||| ||||||||||| ||||| |||| |||||||||||| |||||||||||||| ||||
Sbjct 1185 CGTTAACTTATTAGCAGATACTGAAAATAGAGGCCACATCAATGAAAAGAACTCAGGTGA 1244
Query 1260 TAGTGTGACAATCCGAAGGGATCGGAACGATGAGGCTGAAACTGGGAAATCGGAGATTAT 1319
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1245 TAGTGTGACAATCCGAAGGGATCGGAACGATGAGGCTGAAACTGGGAATTCGGAGATTAT 1304
Query 1320 ATACACTCAAGATCTTATTGTTAGGGACTTGCGATCGACTAGAAAAGTTCAATCGACAGG 1379
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1305 ATACACTCAAGATCTTATCGTTAGGGACTTGCGGTCGACTAGAAAAGTTCAATCGACAGG 1364
Query 1380 AGGGGAAGGAGTTGTGGACTTCAAGCGATTCAGAAAGGGAAATGTTACATGCGGAAACAG 1439
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1365 AGAGGAAGGAGTTGTGGACTTCAAGCGATTCAGAAAGGGAAATGTTATATGCGGAAACAG 1424
Query 1440 CTTCAGTAGCCTAATACCTTTTGCGAAGGATCCATACAAAGAATACGATAGCTGGGACGT 1499
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1425 CTTCAGTAGCCTAATACCTTTTGCGAAGGATCCATACAAAGAATACGATAGCGGGGACGT 1484
Query 1500 GACAGATTTTATGAAAGAAGAGAAGAAAAGGAAGCAGATGGAAGCCATTGCAGAGGACTT 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 GACAGATTTTATGAAAGAAGAGAAGAAAAGGAAGCAGATGGAAGCCATTGCAGAGGACTT 1544
Query 1560 GTTTAAAACTGAAAAGGCTAGAAAGCGTGGAACGGCTGGTTCCATTCGCGGGTTTCTCTC 1619
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1545 GTTTAACACTGAAAAGGCTAGAAAGCGTGGAACGGCTGGTTCCATTCGCGGGTTTCTCAC 1604
Query 1620 TGGAAGTTGAGGTTTT 1635
| ||||||||||||||
Sbjct 1605 TCGAAGTTGAGGTTTT 1620
Score = 137 bits (74), Expect = 2e-31
Identities = 85/90 (94%), Gaps = 2/90 (2%)
Strand=Plus/Plus
Query 1673 TGGAAGAACGCATGATTCTGGATCAGTGGATCACTAGGAACTAAACAAAATCTTGTCTTT 1732
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 TGGAAAAACGCATGATTCTGGATCAGTGGATCACTAGGAACTAAACAAAATCTTGTCTTT 1679
Query 1733 TATTTTTTGTTCTTCATGAGTTAAAAAATG 1762
| |||| ||||||||||||||||| ||||
Sbjct 1680 T-TTTTC-GTTCTTCATGAGTTAAACAATG 1707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69667058105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5