BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02690.1
Length=1458
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477509 jgi|Araly1|477509|fgenesh2_kg.3__210__AT3G02690.1 1986 0.0
> Ahg477509 jgi|Araly1|477509|fgenesh2_kg.3__210__AT3G02690.1
Length=1403
Score = 1986 bits (1075), Expect = 0.0
Identities = 1247/1326 (94%), Gaps = 28/1326 (2%)
Strand=Plus/Plus
Query 21 TTGTTCTAAGTACAAGCAACAATGGAGTGGCCATGGTCGGCCATCGCtgcttcttcttcc 80
|||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1 TTGTTCTAAGGACAAGCAACAATGGAATGGCCATGGTCGGCCATCGCTGCTGCTTCTTCC 60
Query 81 tcttcttctagttgcttctttgcttctcctaactcttgcttgtctATTACTAGACGAACG 140
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 61 TCTTCTTCTAGTTGCTTCTTTGCTTCTCCTAACTCTTGCTTGTCTACTACTAGACAAACG 120
Query 141 AATTTGAGCTGTG-T------TA---A-C--AC--TTCGGTTAAATCCTTGCGCCACAGC 185
|||| |||||||| | || | | || || ||||||||||||||| || |||
Sbjct 121 AATTCGAGCTGTGCTAACAAATATCCATCGAACATTTTGGTTAAATCCTTGCGACATAGC 180
Query 186 AGATTCGACTCGAAGCATA--ATC---TCG---T-TAAACGTCGAATCAATGGAGATTCC 236
||||||||||||||||||| || ||| | ||||||||||||| |||||||||||
Sbjct 181 AGATTCGACTCGAAGCATATTCTCGTTTCGATCTCTAAACGTCGAATCTATGGAGATTCC 240
Query 237 GTTGTTCGGAGAAGCACCACAAGCAATAATAGCACTGAGGAGACAGAATCATCGTCGTCT 296
|||||||||||||||||| | |||||||| ||||| |||||||| ||| ||||||||
Sbjct 241 GTTGTTCGGAGAAGCACCGCTAGCAATAAAAGCACCGAGGAGACTGAACCATCGTCG--- 297
Query 297 TCTTCGTCTGTAGATTGCGTTGGAATGGGATCAGACGTGGAATGCGTCAATAACGGGGAA 356
||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| |||
Sbjct 298 TCTTCGTCTGTAGATTGCGTTGGAATGGGATCAGACGTGGAGTGCGTCTACAACGGAGAA 357
Query 357 GATGAGGAGAATCGGAGCTCTGGAATCTTGAGCGGCGGTGAAGGAACGTTTCTTGAATGG 416
|||||||||||||||||||| |||||||||| |||||| ||||||||||| |||||||||
Sbjct 358 GATGAGGAGAATCGGAGCTCCGGAATCTTGAACGGCGGAGAAGGAACGTTGCTTGAATGG 417
Query 417 ACGGTTCTGATTTCACCCTTCTTTTTCTGGGGAACGGCGATGGTGGCGATGAAGGAAGTG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ACGGTTCTGATTTCACCCTTCTTTTTCTGGGGAACGGCGATGGTGGCGATGAAGGAAGTG 477
Query 477 TTGCCCATTACTGGTCCTTTCTTCGTGGCCGCGTTTCGGTTAATTCCGGCTGGTTTGTTG 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TTGCCCATTACTGGTCCTTTCTTCGTGGCCGCGTTTCGGTTAATTCCGGCTGGTTTGTTG 537
Query 537 CTTGTCGCCTTTGCAGTTTACAAAGGCAGACCTTTGCCTGAAGGAATCAATGCTTGGTTC 596
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 538 CTTGTCGCGTTTGCAGTTTACAAAGGCAGACCTTTGCCTAAAGGAATCAATGCTTGGCTC 597
Query 597 TCTATCGCTCTCTTTGCTCTTGTGGACGCCACTTGTTTCCAGGGATTTCTTGCTCAAGGG 656
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TCTATTGCTCTCTTTGCTCTTGTGGACGCCACTTGTTTCCAGGGATTTCTTGCTCAAGGG 657
Query 657 TTACAGAGAACTTCTGCTGGTTTAGGAAGTGTCATAATTGATTCTCAGCCACTGACTGTA 716
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 658 TTACAGAGAACTTCTGCTGGTTTAGGAAGTGTTATAATTGATTCTCAGCCACTGACTGTT 717
Query 717 GCTGTGTTAGCATCTTTCTTGTTTGGTGAGTCAATTGGAATAGTGAGAGCTGGAGGTTTG 776
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 718 GCTGTATTAGCATCTTTCTTGTTTGGTGAGTCCATTGGAATAGTGAGAGCTGGAGGTTTG 777
Query 777 CTTCTTGGTGTTGCTGGACTTTTGCTTCTTGAGGTTCCATCAGTAACTTCAGATGGTAAT 836
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 778 CTTCTTGGTGTTGCTGGACTTTTGCTTCTTGAGGTTCCATCAGTTACTTCAGATGGTAAT 837
Query 837 AATTTTTCCTTGTGGGGAAGTGGAGAATGGTGGATGCTTCTTGCAGCTCAGAGCATGGCT 896
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 838 AACTTTTCCTTGTGGGGAAGTGGAGAGTGGTGGATGCTTCTTGCAGCTCAGAGCATGGCT 897
Query 897 ATTGGCACTGTCATGGTTCGATGGGTCTCAAAATACTCAGATCCAATTATGGCAACCGGT 956
||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 898 ATTGGCACTGTGATGGTCCGATGGGTCTCAAAATACTCAGATCCAATTATGGCTACCGGT 957
Query 957 TGGCATATGGTTATCGGTGGCCTTCCTCTTTTGGCGATTTCTGTTATAAATCATGACCCG 1016
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 958 TGGCATATGGTAATCGGTGGCCTTCCTCTTTTGGCGATTTCTGTTATAAACCATGACCCG 1017
Query 1017 GTTTTTAATGGTAGTCTTCAAGATCTATCCACAAATGATGTTATAGCACTTCTCTACACA 1076
||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1018 GTTTTTATTGGCAGTCTTCAAGAGCTATCCACAAATGATGTTATAGCACTTCTCTACACA 1077
Query 1077 TCCATTTTTGGCAGCGCAGTTAGCTACGGTGTTTACTTCTATAGCGCTACTAAAGGAAGC 1136
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1078 TCCATTTTTGGCAGCGCAGTTAGCTACGGTGTTTACTTCTACAGCGCTACTAAAGGAAGC 1137
Query 1137 CTAACTAAACTCAGCTCACTCACCTTCTTGACACCAATGTTTGCATCAATCTTTGGGTAT 1196
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1138 CTAACTAAACTCAGCTCACTCACCTTCCTGACACCAATGTTTGCATCAATCTTTGGATAT 1197
Query 1197 CTGTACCTCAATGAGACTTTCTCCTCATTGCAACTGGTCGGAGCAGCAGTGACTTTGGTC 1256
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1198 CTGTACCTCAATGAGACTTTCTCCTCATTGCAACTGGTGGGAGCAGCAGTCACTTTGGTT 1257
Query 1257 GCTATATACTTGGTGAACTTTCCCGAAGGCAACGACTGAGACACTCTTTGAGTTCTTACT 1316
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1258 GCTATATACTTGGTGAACTTTCCCGAAGGCAACGACTGAGACACTCTTTCAGTTCTTACT 1317
Query 1317 TACACT 1322
| ||||
Sbjct 1318 T-CACT 1322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54545230840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5