BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02700.1
Length=1081
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477510 jgi|Araly1|477510|fgenesh2_kg.3__211__AT3G02700.1 1378 0.0
Ahg488488 jgi|Araly1|488488|fgenesh2_kg.6__1622__AT5G16360.1 303 1e-81
Ahg941127 jgi|Araly1|941127|scaffold_601671.1 294 8e-79
Ahg923061 jgi|Araly1|923061|scaffold_104342.1 283 2e-75
> Ahg477510 jgi|Araly1|477510|fgenesh2_kg.3__211__AT3G02700.1
Length=960
Score = 1378 bits (746), Expect = 0.0
Identities = 895/963 (93%), Gaps = 25/963 (3%)
Strand=Plus/Plus
Query 132 AGAAGATGGGATTCCTTTCCAATAAAATCTCCAGAGACGATGTGAAACCAGGCGATCACA 191
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAAGATGGGTTTCCTTTCCAATAAAATCTCCAGAGACGATGTGAAACCAGGCGATCACA 60
Query 192 TCTATTCATGGCGTCAAGCCTACATTTACGCTCATCACGGAATCTATGTAGGTAATGGAC 251
|||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 61 TCTATTCATGGCGTCAGGCCTATATTTACGCTCATCACGGAATCTATGTAGGTGATGGAC 120
Query 252 AAGTCAACCATTTTACTCGTGGTGATGGTCAAGAGACTGGAACTGGGACTTTCTTGGACA 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGTCAACCATTTTACTCGTGGTGATGGTCAAGAGACTGGAACTGGGACTTTCTTGGACA 180
Query 312 ACATCATTGTTAGTTCATCTCATAATCATGGAGACAACCCATGTCCTGATTGTGGAGATC 371
| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 181 ATATCATTGTTAGTTCATCTCATAATCATGGAGACAACCCATGTCCTAATTGCGGAGATC 240
Query 372 GATCCAATCTTGGCGGTGTTATATCTTCCTGCCTTGAATGTTTCCTTGCCGGAGGTGATC 431
||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 241 GATCCAATCTTGGCGGTGTCATCTCTTCCTGCCTTGAATGTTTCCTTGCAGGAGGTGATC 300
Query 432 TCTATGTCTTTGAGTACAGTGTTTCCCCTGCTATCTTTCTTGCCAAACCTCGAGGCGGCG 491
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 301 TCTATGTCTTTGAGTACAGTGTTTCCCCTGCTATTTTTCTTGCCAAACCTCGAGGCGGCG 360
Query 492 TATGCACTATAGCATCTTCAGATCCTCCAGAAGAAGTCATCTATCGAGCAAATTTTCTCT 551
||||||| |||||||||||||||||||| ||||||||||| || || ||||| |||||||
Sbjct 361 TATGCACAATAGCATCTTCAGATCCTCCTGAAGAAGTCATTTACCGTGCAAACTTTCTCT 420
Query 552 TGCAAAATGGTTTTGGTGTGTACAATGTCTTCAAGAACAACTGTGAAGATTTTGCCATCT 611
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 421 TGCAAAATGGTTTTGGTGTGTACAATGTTTTTAAGAACAACTGTGAAGATTTTGCCATCT 480
Query 612 ATTGCAAAACGGGTTTGCTAGTGGCAAACACCGACGTGGGAAGGAGTGGTCAAGCTGCTT 671
|||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 481 ATTGTAAAACTGGTTTGCTAGTGGCAAACACCGACGTGGGGAGGAGCGGTCAAGCCGCTT 540
Query 672 CAATTGTTGCAGCTGCCAGTGTTCTTCTTTCTTCACCACTCAGGTTTGTAGCAGGTTTTG 731
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 541 CCATTGTTGCAGCTGCCAGTGTTCTTCTTTCTTCGCCACTCAGGTTTGTAGCAGGTTTTG 600
Query 732 GTGGTTTGGCTGTGGCTGGCTATGGCATGTACTGCACCAGTCGCTTAGTTTCAGATATAG 791
||||||||||||| ||||| |||||||||||||||||||||||| | |||||||||||||
Sbjct 601 GTGGTTTGGCTGTTGCTGGATATGGCATGTACTGCACCAGTCGCCTGGTTTCAGATATAG 660
Query 792 GCATGCGATGGGATGTGAGCAAGGTGCCTGTTGAGAGACTAGTTGCTGATGTGG-----C 846
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 661 GCATGCGATGGGATGTGAGCAAGGTGCCTGTTGAGAGACTAGTTGCTGATGTGGAGAGAC 720
Query 847 T--T-G-T-ATGTCG--GA-----C--A--TGGAAGCTAAACCAGAAGATGA-GAAGACT 889
| | | | |||| | || | | ||||||||||| ||||||| || ||||||
Sbjct 721 TAGTTGCTGATGTGGCTGATAAGTCGGAGATGGAAGCTAAATCAGAAGA-GAAGAAGACC 779
Query 890 ACTTAATCCAAAACTGCTCACACCTGTATTACCATACTGGTTGATCTCTGATTGTAAATG 949
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 780 ACT-AATCCAAAACTGCTCACACCTGTATTACCATAATGGTTGATCTCTGATTGTAAATG 838
Query 950 TTGTGGCGGAAGTAAGAGAATCTGCTTCTGCTGTATCGTGTTGTGCAACATTTGTTTATG 1009
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 839 TTGTGGAGGAAGTAAGAGAATCTGCTTCTGCTGTATCGAGTTGTGCAACATTTGTT-ATC 897
Query 1010 TAATTACGAAACTTGGCTTTTGATTAACACTGAACTATGATGCTTCATTTTATTATATAC 1069
| |||| |||||| ||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 898 TTATTAAAAAACTTCGCTTTTGATTAACACTGAACTATGATGATTCATTTTACTATATAC 957
Query 1070 AAT 1072
|||
Sbjct 958 AAT 960
> Ahg488488 jgi|Araly1|488488|fgenesh2_kg.6__1622__AT5G16360.1
Length=997
Score = 303 bits (164), Expect = 1e-81
Identities = 404/516 (78%), Gaps = 32/516 (6%)
Strand=Plus/Plus
Query 132 AGAAGATGGGATTCCTT-TCCAATAAAATCTCCAGAGACGATGTGAAACCAGGCGATCAC 190
||||||||||||| || ||| | || ||||| ||||| ||| |||||||||||||||||
Sbjct 73 AGAAGATGGGATT-GTTCTCCCACAAGATCTCGAGAGATGATCTGAAACCAGGCGATCAC 131
Query 191 ATCTATTCATGGCGTCAA-GCCTACATTTACGCTCATCACGGAATCTATGTAGGTA-ATG 248
||||||||||||||| || | || || ||| |||||||||||||||| ||||| | |||
Sbjct 132 ATCTATTCATGGCGT-AACGTTTATATCTACTCTCATCACGGAATCTACGTAGG-AGATG 189
Query 249 -GACAAGTCAACCATTTTACTCGTGGTGATGGTCAAGAGACT-GGAACTGGGACT-TTCT 305
|| |||||| ||||| |||||||| | ||||| ||| | | ||||| || || || |
Sbjct 190 AGA-AAGTCATTCATTTCACTCGTGGAGGTGGTCTAGA-ATTCGGAACAGGAACAGTT-T 246
Query 306 TGGACAACATCATTGTTAGTTCA-T-CTCATAATCATGGA-GAC-A-ACCC-A--TGTCC 357
||||||| ||||| | || |||| | | || ||||||||| || | | | ||||
Sbjct 247 TGGACAAGATCATCGATATTTCAATAC-CA-AATCATGGAAGAAGAGATAATAAGTGTCT 304
Query 358 TGATTGTGGAGATCGATCCAATCTTGGCGGTGTTATATCTTCCTGCCTTGAATGTTTCCT 417
|||||||||||||| ||||||||| || ||||| || ||||| || ||||| ||||| ||
Sbjct 305 TGATTGTGGAGATCAATCCAATCTCGGTGGTGTAATCTCTTCTTGTCTTGATTGTTTTCT 364
Query 418 TGCCGGAGGTGATCTCTATGTCTTTGAGTACAGTGTTTCCCC-TGCTATCTTTCTTGCCA 476
|||||||| |||| ||| |||| || ||||||| || || | | |||||||| || |
Sbjct 365 CGCCGGAGGAAATCTTTATCTCTTCGAATACAGTGCCTCTCCGT-CAATCTTTCTAGCTA 423
Query 477 AACCTCGAGGCGGCGTATGCACTATAGCATCTTCAGATCCTCCAGAAGAAGTCATCTATC 536
|| |||| || |||||| ||||||||||||||||| || |||||||| | ||
Sbjct 424 AAA---GAGGTGGTACATGCACGGTAGCATCTTCAGATCCTTGTGATGAAGTCATTTCTC 480
Query 537 GAGC-AAATTT-T-CTCTTGCAAAATGGTTTTGGTGTGTACAATGTCTTCA-AGAACAAC 592
| || |||||| | || ||||||||||| ||||||| |||| || | || | | |||||
Sbjct 481 GTGCTAAATTTCTTCTTTTGCAAAATGGGTTTGGTGAGTACGATCTTTT-AGACAACAAT 539
Query 593 TGTGAAGATTTTGCCATCTATTGCAAAACGGGTTTG 628
|||||||||||||||||||| |||| || ||||||
Sbjct 540 TGTGAAGATTTTGCCATCTACTGCAGTACTGGTTTG 575
> Ahg941127 jgi|Araly1|941127|scaffold_601671.1
Length=766
Score = 294 bits (159), Expect = 8e-79
Identities = 429/555 (77%), Gaps = 36/555 (6%)
Strand=Plus/Plus
Query 136 GATGGGATTCCTTTCCAATAAAATCTCC--AGAGACGATGTGAAACCAGGCGATCACATC 193
||||||||| || || || |||||||| |||||| || |||| || || |||||||||
Sbjct 20 GATGGGATTACTCTCAAACCAAATCTCCAGAGAGAC-AT-TGAAGCCTGGAGATCACATC 77
Query 194 TATTCATGGCGTCA-AGCCTACATTTACGCTCATCACGGAATCTATGTAGGTAATGGACA 252
|| ||||||||| | || || || ||| |||| ||||||||||||||||| || || |
Sbjct 78 TACTCATGGCGT-ACCGCTTATATCTACTCTCACCACGGAATCTATGTAGGCGAT-GAGA 135
Query 253 A-GTCA-ACCATTTTACTCGTGGTGATGGTCAAGAGACTGGAACTGGGACTTTCTTGGAC 310
| || | | ||||| |||||||| | ||||| || || ||||| ||||||||| |||||
Sbjct 136 AGGTGATA-CATTTCACTCGTGGAGGTGGTCTGGAAACCGGAACCGGGACTTTCCTGGAC 194
Query 311 AACATCATTGTTAGTTCAT-CTCATAATCAT---GGAG---ACAACCCATGTCCTGATTG 363
|| |||| | |||||| | || |||||| |||| ||||||| |||||| | ||
Sbjct 195 AAGTTCATCGCTAGTTC-TGTTCCGAATCATGGAGGAGACAACAACCCGTGTCCTAAGTG 253
Query 364 TGGAGATCGATCCAATCTTGGCGGTGTTATATCTTCCTGCCTTGAATG-TTTCCTTGCCG 422
|||||||| |||||| | | |||||| || ||||| |||||||| || ||| || ||||
Sbjct 254 TGGAGATCAATCCAAACGCGACGGTGTAATCTCTTCTTGCCTTGATTGCTTT-CTCGCCG 312
Query 423 GAGGTGATCTCTATGTCTTTGAGTACAGTGTTTCCCCTGCTATCTTTCTTGCCAAACCTC 482
|||| | |||||| |||| |||||| |||| || || ||| ||||| | || |||| |
Sbjct 313 GAGGAAACCTCTATCTCTTCGAGTACGGTGTCTCTCCAGCTTTCTTTGTCGCAAAACAAC 372
Query 483 GAGGCGGCGTA--TGCACTATAGCATCTTCAGATCCTCCAGAAGAAGTCATCTAT-CGAG 539
|||| | ||| ||||| | |||| ||||||||||||| |||||||| || | | || |
Sbjct 373 GAGG-AG-GTACTTGCACAACAGCACCTTCAGATCCTCCTGAAGAAGTTAT-TTTCCGTG 429
Query 540 C-AAATT-TTC-TCTTGCAAAATGGTTTTGGTG-TGTACAATGTCTTCAAGAACAACTGT 595
| ||||| || | |||| ||| | ||| |||| | |||||| | || |||||||||||
Sbjct 430 CGAAATTCCTCTTATTGCGAAACGCTTTCGGTGCT-TACAATCTGTTTGAGAACAACTGT 488
Query 596 GAAGATTTTGCCATCTATTGCAAAACGGGTTTGCTAGTG--G-CAAACACCGACGT-GGG 651
|||||||||||||||||||||||| | |||||| | || | |||| | | | || |||
Sbjct 489 GAAGATTTTGCCATCTATTGCAAATCTGGTTTGGTTGTCATGTCAAATATCAA-GTTGGG 547
Query 652 AAGGAGTGGTCAAGC 666
||| |||||||||||
Sbjct 548 AAGTAGTGGTCAAGC 562
> Ahg923061 jgi|Araly1|923061|scaffold_104342.1
Length=781
Score = 283 bits (153), Expect = 2e-75
Identities = 428/556 (77%), Gaps = 38/556 (7%)
Strand=Plus/Plus
Query 136 GATGGGATTCCTTTCCAATAAAATCTCC--AGAGACGATGTGAAACCAGGCGATCACATC 193
||||||||| || || || |||||||| |||||| || |||| || || |||||||||
Sbjct 23 GATGGGATTACTCTCAAACCAAATCTCCAGAGAGAC-AT-TGAAGCCTGGAGATCACATC 80
Query 194 TATTCATGGCGTCAA-GCCTACATTTACGCTCATCACGGAATCTATGTAGGTAATGGACA 252
|| ||||||||| || || || | ||| |||| ||||||||||||||||| || || |
Sbjct 81 TACTCATGGCGT-AACGCTTATACCTACTCTCACCACGGAATCTATGTAGGCGAT-GAGA 138
Query 253 A-GTCA-ACCATTTTACTCGTGGTGATGGTCAAGAGACTGGAACTGGGACTTTCTTGGAC 310
| || | | ||||| |||||||| | ||||| || || ||||| ||||||||| |||||
Sbjct 139 AGGTGATA-CATTTCACTCGTGGAGGTGGTCTGGAAACCGGAACCGGGACTTTCCTGGAC 197
Query 311 AACATCATTGTTAGTTCAT-CTCATAATCAT---GGAG---ACAACCCATGTCCTGATTG 363
|| |||| | ||||| | || |||||| |||| ||||||| ||||| | ||
Sbjct 198 AAGTTCATCGCTAGTT-GTGTTCCGAATCATGGAGGAGACAACAACCCGTGTCCCAAGTG 256
Query 364 TGGAGATCGATCCAATCTTGGCGGTGTTATATCTTCCTGCCTTGAATG-TTTCCTTGCCG 422
|||||||| |||||| || |||||| || ||||| |||||||| || ||| || ||||
Sbjct 257 TGGAGATCAATCCAAACTCCACGGTGTAATCTCTTCTTGCCTTGATTGCTTT-CTCGCCG 315
Query 423 GAGGTGATCTCTATGTCTTTGAGTACAGTGTTTCCCCTGCTATCTTTCTTGCCAAACCTC 482
|||| | |||||| |||| |||||| |||| || || ||| ||||| | || |||| |
Sbjct 316 GAGGAAACCTCTATCTCTTCGAGTACGGTGTCTCTCCAGCTTTCTTTGTCGCAAAACAAC 375
Query 483 GAGGCGGCGTA--TGCACTATAGCATCTTCAGATCCTCCAGAAGAAGTCATCTAT-CGAG 539
|||| | ||| ||||| | |||| ||||||||||||| |||||||| || | | || |
Sbjct 376 GAGG-AG-GTACTTGCACAACAGCACCTTCAGATCCTCCTGAAGAAGTTAT-TTTCCGTG 432
Query 540 C-AAATTTTCTCTTGC-A--AAATGGTTTTGGTG-TGTACAATGTCTTCAAGAACAACTG 594
| ||| |||||||| | | |||||| ||||||| | ||| || | || ||||||| ||
Sbjct 433 CGAAA-TTTCTCTTACTACGAAATGGGTTTGGTGCT-TACCATCTGTTTGAGAACAATTG 490
Query 595 TGAAGATTTTGCCATCTATTGCAAAACGGGTTTGCTAGTG--G-CAAACACCGACGT-GG 650
||||||||||||||||||||||||||| ||||| | || | |||| | | | || ||
Sbjct 491 TGAAGATTTTGCCATCTATTGCAAAACTAGTTTGGTTGTCATGTCAAAGATCAA-GTTGG 549
Query 651 GAAGGAGTGGTCAAGC 666
|||| |||||||||||
Sbjct 550 GAAGAAGTGGTCAAGC 565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40257800352
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5