BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02710.1
Length=1829
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477511 jgi|Araly1|477511|fgenesh2_kg.3__212__AT3G02710.1 2748 0.0
Ahg913285 jgi|Araly1|913285|Al_scaffold_0001_3539 682 0.0
> Ahg477511 jgi|Araly1|477511|fgenesh2_kg.3__212__AT3G02710.1
Length=1699
Score = 2748 bits (1488), Expect = 0.0
Identities = 1633/1703 (96%), Gaps = 10/1703 (1%)
Strand=Plus/Plus
Query 16 TATTTCATCCCTTAAACCAAAAATCTTAGTTTCAGACGG-AA-AGAGAGAGTATAGCCAT 73
||||||| |||||||||||||||||||||| | |||||| || |||||||||||||||||
Sbjct 1 TATTTCAGCCCTTAAACCAAAAATCTTAGTCTGAGACGGAAAGAGAGAGAGTATAGCCAT 60
Query 74 GGAAGTCTCAAATCAGACCAGAAAACGGAAAGCAATCGACGCCGGACATGGCTCGCAGCC 133
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GGAAGTCTCAAATCAGACCAGAAAACGGAAAGCAATCGACGCCGGACATGGCTCGCCGCC 120
Query 134 GACGGCGTATCGAGGCTCAGATGGTGTAGATCTTTCTCTCCTTGAAGCACTTGAGAAGTC 193
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 GCCGGCGTATCGAGGCTCAGATTCTGTAGATCTTTCTCTCCTTGAAGCACTTGAGAAGTC 180
Query 194 TTCGCATAATGGAGTAGAAGCGCTTGATCTTAAAACCCTAAAAAAGCTTGTCCTCTCCTT 253
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCGCATCATGCAGTAGAAGCGCTTGATCTTAAAACCCTAAAAAAGCTTGTCCTCTCCTT 240
Query 254 CGAGCGGCGTCTTAGAGACAACATAGCTGCTCGTCTCAAGTATGTGGAGAATCCAGAAAA 313
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGAGCGGCGTCTTAGGGACAACATAGCTGCTCGTCTCAAGTATGTGGAGAATCCAGAAAA 300
Query 314 GTTCGCTGACTCAGAGGTTGACCTACACGACGATCTTCAGAAGCTCAAGGTGCTCGCTGG 373
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 301 GTTCGCTGACTCAGAGGTTGACCTACACGACGATCTTCAGAAGCTAAAGGTTCTCGCTGG 360
Query 374 AGCTCCGGAACTTTACCCGGACCTTGTTGCTTCCAATACGGTTCCTTCGATTGTCAATCT 433
||||||||| |||||||| |||||||||||||||||| |||||||||||||||| || ||
Sbjct 361 AGCTCCGGAGCTTTACCCTGACCTTGTTGCTTCCAATTCGGTTCCTTCGATTGTTAACCT 420
Query 434 CCTCTCTCATGAAAACTCCGATATCGCCAACGATGTTGTTCAGCTTCTTCAGGATCTGAC 493
|||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCTCTCCCATGATAACTCCGACATCGCCAACGATGTTGTTCAGCTTCTTCAGGATCTGAC 480
Query 494 TGACGAAGATGCCTTAGAGGATAACGATGAGCCTGCGCGTGTGTTAGTCGACGC-CTTGG 552
|||||||||||| |||||||||||||||||||| |||||||||||||||||||| | |||
Sbjct 481 TGACGAAGATGCATTAGAGGATAACGATGAGCCGGCGCGTGTGTTAGTCGACGCAC-TGG 539
Query 553 TTGAAAACAATGTGCTCGAGCTCTTGGTTCAGAATATGAATCGTTTGTCTGAGGCTGACC 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 540 TTGAAAACAATGTGCTCGAGCTCTTGGTTCAGAATATGAATCGTTTGTCTGAGGCAGACC 599
Query 613 CTGACGAAGCTACGGCTATATACGCAACTTTGACGGTGATTGAGAATTTGGTGGAAGTAA 672
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 600 CAGACGAAGCTACGGCTATATACGCAACTTTGACAGTGATTGAGAATTTGGTGGAAGTAA 659
Query 673 AGCCGGCTGTTGCTCAATTGGTGTGTGAAAGGACGAAGCTATTGCGGTGGCTTCTGACGA 732
|||||||||||||| |||||||||||||| | ||||| ||||||||||||||||||||||
Sbjct 660 AGCCGGCTGTTGCTGAATTGGTGTGTGAACGAACGAAACTATTGCGGTGGCTTCTGACGA 719
Query 733 AGATTAAGGTGAGGGAATTCGAAGGAATCAAGCAGTACGCGTCTGAGATTCTTGCAATTC 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGATTAAGGTGAGGGAATTCGAAGGAATCAAGCAGTACGCGTCTGAGATTCTTGCAATTC 779
Query 793 TGCTGCAAAACAG-TACGGCGAATCAGAAACGGCTAGGTCAGATGAATGGTGTAGACGCT 851
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGCTGCAAAACAGCT-CGGCGAATCAGAAACGGCTAGGTCAGATGAATGGTGTAGACGCT 838
Query 852 GTGCTTGAAGGTGTGGCGATGTATAAGTCAAAGGATCCTAAAACTCCTGATGAGGAAGAG 911
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 839 GTGCTTGAAGGTGTGGCGATGTATAAGTCGAAGGATCCTAAAACTCCTGATGAGGAAGAG 898
Query 912 ATGTTAGAGAATCTGTTTGATTGTTTGTGTTGCCTCTTGATGCCATTGGAGAACAAGGAG 971
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ATGTTAGAGAATCTATTTGATTGTTTGTGTTGCCTCTTGATGCCATTGGAGAACAAGGAG 958
Query 972 AGGTTTGTGAATGCGGAAGGTGTAGAGCTGATGATTATTATCATGAAACAGAAGAAATAT 1031
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 959 AGGTTTGTGAATGCGGAAGGTGTTGAGCTGATGATTATTATCATGAAGCAGAAGAAATAT 1018
Query 1032 GCTTACGGGTCTGCTATTCGAGCTCTAGACTTCGCCATGACCAATTATCCACCAGCATGT 1091
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1019 GCTTACGGGTCTGCAATTCGAGCTCTAGACTTCGCCATGACCAATTATCCACCAGCTTGT 1078
Query 1092 GAGAGGTTTGTGGATGTTATGGGACTGAAAACAGCATTTGCTGCTTTCATGGGTAAGATT 1151
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1079 GAGAGGTTTGTGGATGTTATGGGGCTGAAAACAGCATTTGCTGCTTTCATGGGTAAGATT 1138
Query 1152 CCGCTAAACAAGAGAATCAAAAGGGAGCGGTATAAGGAGGAGCTAGAGGAGCGGGTTATT 1211
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1139 CCGCTAAACAAGAGGATCAAAAGGGAGCGGTATAAAGAGGAGCTAGAGGAGCGGGTTATT 1198
Query 1212 TCCCTGATTGCGTCATTATTTGCTGGGATATTAAGGGGTTCTAGGAGAGATCGATTGTTG 1271
||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 1199 TCCCTGATTGCGTCATTATTTGCTGGGATTTTAAGGGGTTCTAGGAGAGATCGTTTATTA 1258
Query 1272 AGTAAATTCGTGGAGAATGAATTTGAGAAGATTGACCGGCTCATGGAATTATATTTGAGA 1331
||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1259 AGTAAGTTTGTGGAGAATGAGTTTGAGAAGATTGACCGGCTCATGGAATTATATTTCAGA 1318
Query 1332 TACTCTGATAGGGTTAGATCAGAGGCGGAAAGGTTAGACCAGCTTGAGCTTGATGACCTT 1391
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1319 TACTCTGATAGGGTTAGATCAGAGGCGGAGAGGTTAGACCAGCTTGAGCTTGATGACCTT 1378
Query 1392 GAGTTGGATGAAGATGAGAAATATAATCGGAAGCTAGAATCAGGTCTCTACAGTCTTCAG 1451
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1379 GAGTTGGATGAAGATGAGAAATATAACCGGAAGCTAGAATCAGGGCTCTACAGTCTTCAG 1438
Query 1452 CTTGTTGCTGTTATCCTGGGGCATATTTGGTGTTCTGAGCATTCTGGAATGAGAGCGCGG 1511
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1439 CTTGTTGCTGTTATCCTGGGCCATATTTGGTGTTCTGAGCATTCTGGAATGAGAGCGCGG 1498
Query 1512 GTGGAGCTGCTACTGAAGCAACAGAAGCTTAGTAAAACCGATGTCAAGCAGATTCTTCAG 1571
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 ATCGAGCTGCTACTGAAGCAACAGAAGCTTAGTAAAACCGATGTCAAGCAGATTCTTCAG 1558
Query 1572 GAGTATCACGACAACATTGGAGATCTTGATGGAGCAGAGGAGAAGGAACGAGGACAGGCG 1631
|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1559 GAATATCACGACAACATTGGAGATCTTGATGGACCAGAGGAGAAGGAACGAGGACAGGCA 1618
Query 1632 AGAATTCAGTTGTTCATATCAGCGATGTGATTTAGAGAAGGAAAGAAAGAAGTTAGA-A- 1689
|||||||||||||||||||| || ||||||||||||||| ||||||||||| || || |
Sbjct 1619 AGAATTCAGTTGTTCATATCGGCAATGTGATTTAGAGAAAGAAAGAAAGAACTTGGAGAT 1678
Query 1690 ATCGTGCAAATGGCTTGGTATTA 1712
|||| |||||||||||||||||
Sbjct 1679 ATCG--CAAATGGCTTGGTATTA 1699
> Ahg913285 jgi|Araly1|913285|Al_scaffold_0001_3539
Length=804
Score = 682 bits (369), Expect = 0.0
Identities = 409/429 (95%), Gaps = 0/429 (0%)
Strand=Plus/Plus
Query 720 TGGCTTCTGACGAAGATTAAGGTGAGGGAATTCGAAGGAATCAAGCAGTACGCGTCTGAG 779
|||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||
Sbjct 22 TGGCTTCTGACGAAGATTAAGGTGAGGGAATTTGAAGGAATCAAGAAGTATGCGTCTGAG 81
Query 780 ATTCTTGCAATTCTGCTGCAAAACAGTACGGCGAATCAGAAACGGCTAGGTCAGATGAAT 839
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 82 ATTCTTGCAATTCTGTTGCAAAACAGCACGGCGAATCAGAAACGGCTAGGTCAGATGAAT 141
Query 840 GGTGTAGACGCTGTGCTTGAAGGTGTGGCGATGTATAAGTCAAAGGATCCTAAAACTCCT 899
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 142 GGTGTAGACGCTGTGCTTGAAGGTGTGGCGATGAATAAGTCGAAGGATCCTAAAACTCCT 201
Query 900 GATGAGGAAGAGATGTTAGAGAATCTGTTTGATTGTTTGTGTTGCCTCTTGATGCCATTG 959
||| |||||||||||||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 202 GATAAGGAAGAGATGTTAGATAATTTATTTGATTGTTTGTGTTGCCTCTTGATGCCATTG 261
Query 960 GAGAACAAGGAGAGGTTTGTGAATGCGGAAGGTGTAGAGCTGATGATTATTATCATGAAA 1019
|||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 262 GAGAACAAGGAGAGGTTTGTGAATGCAGAAGGTGTTGAGCTGATGATTATAATCATGAAG 321
Query 1020 CAGAAGAAATATGCTTACGGGTCTGCTATTCGAGCTCTAGACTTCGCCATGACCAATTAT 1079
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 322 CAGAAGAAATATGCTTACGGGTCTGCAATTCGAGCTCTAGACTTTGCCATGACCAATTAT 381
Query 1080 CCACCAGCATGTGAGAGGTTTGTGGATGTTATGGGACTGAAAACAGCATTTGCTGCTTTC 1139
|||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 382 CCACCAGCATGTCAGAGTTTTGTGGATGTTATGGGACTGAAGACAGCATTTGCTGCTTTC 441
Query 1140 ATGGGTAAG 1148
|||||||||
Sbjct 442 ATGGGTAAG 450
Score = 466 bits (252), Expect = 3e-130
Identities = 280/294 (95%), Gaps = 0/294 (0%)
Strand=Plus/Plus
Query 1148 GATTCCGCTAAACAAGAGAATCAAAAGGGAGCGGTATAAGGAGGAGCTAGAGGAGCGGGT 1207
||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 510 GATTCCGCTAAGCAAGAGGATCAAAAGGGAGCGGTATGAGGAGGAGCTAGAGGAGCGGGT 569
Query 1208 TATTTCCCTGATTGCGTCATTATTTGCTGGGATATTAAGGGGTTCTAGGAGAGATCGATT 1267
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 570 TATTTCCCTGATTGCGTCATTATTTGCTGGGATTTTAAGGGGTTCTAGGAGAGATCGATT 629
Query 1268 GTTGAGTAAATTCGTGGAGAATGAATTTGAGAAGATTGACCGGCTCATGGAATTATATTT 1327
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 630 GTTGAGTAAATTTGTGGAGAATGAATTTGAGAAGATTGACCGGCTCATGGAATTATACAT 689
Query 1328 GAGATACTCTGATAGGGTTAGATCAGAGGCGGAAAGGTTAGACCAGCTTGAGCTTGATGA 1387
|||||| |||||||||||||||| |||||| || || |||||||||||||||||||||||
Sbjct 690 GAGATATTCTGATAGGGTTAGATTAGAGGCTGAGAGATTAGACCAGCTTGAGCTTGATGA 749
Query 1388 CCTTGAGTTGGATGAAGATGAGAAATATAATCGGAAGCTAGAATCAGGTCTCTA 1441
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 750 CCTTGAGTTGGATGAAGATGAGAAATATAATCGGGAGCTAGAATCAGGCCTCTA 803
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68676711735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5