BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02720.1
Length=1556
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927762 jgi|Araly1|927762|scaffold_300219.1 2004 0.0
Ahg903313 jgi|Araly1|903313|Al_scaffold_0003_441 243 4e-63
> Ahg927762 jgi|Araly1|927762|scaffold_300219.1
Length=1218
Score = 2004 bits (1085), Expect = 0.0
Identities = 1173/1216 (96%), Gaps = 4/1216 (0%)
Strand=Plus/Plus
Query 83 tctctc-catct-tcatctctctTGCTGAAAAATGGCGAACTCGAGAACTGTCTTAATCT 140
|||||| | ||| || |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 TCTCTCTC-TCTCTC-TCTCTCTTGCTGAAAAATGGCGAACTCGAGAACTGTTTTAATCT 58
Query 141 TGTGCGGTGACTACATGGAAGACTACGAGGTGATGGTTCCGTTCCAAGCTTTACAAGCTT 200
||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||
Sbjct 59 TGTGCGGTGACTACATGGAAGACTACGAGGTAATGGTCCCGTTCCAAGCTTTGCAAGCTT 118
Query 201 TCGGAATCACCGTCCACACCGTCTGCCCCGGAAAGAAAGCTGGTGACTCTTGCCCCACCG 260
||||| || |||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 119 TCGGAGTCTCCGTCCACACCGTCTGTCCCGGAAAGAAAGCTGGCGACTCTTGCCCCACCG 178
Query 261 CCGTTCACGATTTTTGTGGCCACCAGACATATTTTGAGTCACGAGGTCACAATTTCACGC 320
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 179 CCGTTCACGATTTCTGTGGCCACCAGACATATTCTGAGTCACGAGGTCACAATTTCACGC 238
Query 321 TCAATGCAACGTTTGATGAAGTTGACCTTAGCAAGTATGATGGATTGGTTATACCAGGAG 380
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 239 TCAATGCAACTTTTGATGAAGTTGATCTTAGCAAGTATGATGGATTGGTTATACCAGGAG 298
Query 381 GACGTGCTCCAGAATACCTGGCCTTGACTGCATCTGTTGTTGAGCTGGTTAAAGAGTTCT 440
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 299 GACGTGCTCCAGAATACCTGGCATTGACTGCATCTGTTGTTGAGCTGGTTAAAGAGTTCT 358
Query 441 CAAGATCTGGCAAGCCCATTGCCTCTATTTGCCATGGGCAGTTGATATTGGCAGCTGCAG 500
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CAAGTTCTGGCAAGCCCATCGCCTCTATTTGCCATGGGCAGTTGATATTGGCAGCTGCAG 418
Query 501 ACACAGTCAATGGTCGAAAATGTACAGCTTATGCAACTGTTGGACCTTCCCTTGTTGCTG 560
|| |||||||||||||||| || |||||||||||||||||||||||| ||||| ||||||
Sbjct 419 ACGCAGTCAATGGTCGAAAGTGCACAGCTTATGCAACTGTTGGACCTGCCCTTATTGCTG 478
Query 561 CAGGTGCCAAGTGGGTCGAACCGATAACTCCGGATGTCTGTGTTGTTGATGGTAGTTTGA 620
||||||| |||||| ||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 479 CAGGTGCTAAGTGGATCGAACCGATAACGCCGGATGTTTGTGTTGTTGATGGTAGTTTGA 538
Query 621 TTACTGCAGCTACATATGAGGGTCATCCTGAATTTATCCAGCTTTTTGTCAAGGCTCTTG 680
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 539 TTACTGCAGCTACATATGAGGGTCATCCTGAATTTATCCAGCTTTTTGTCAAGGCTCTGG 598
Query 681 GCGGTAAAATAACTGGAGCAAATAAAAGGATCTTGTTTCTTTGTGGGGATTATATGGAAG 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GCGGTAAAATAACTGGAGCAAATAAAAGGATCTTGTTTCTTTGTGGGGATTATATGGAAG 658
Query 741 ACTATGAAGTCAAAGTGCCTTTCCAGTCCCTTCAAGCTTTGGGATGTCAAGTTGATGCGG 800
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ACTATGAAGTCAAAGTCCCTTTCCAGTCCCTTCAAGCTTTGGGATGTCAAGTTGATGCGG 718
Query 801 TTTGTCCAGAGAAGAAGGCTGGTGATCGCTGCCCAACTGCAATCCATGACTTTGAGGGTG 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTTGTCCAGAGAAGAAGGCTGGTGATCGCTGCCCAACTGCAATCCATGACTTTGAGGGTG 778
Query 861 ACCAAACTTACAGTGAGAAACCAGGCCACACTTTTGCTTTAACTACTAACTTTGATGACC 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 779 ACCAAACTTACAGTGAGAAACCAGGCCACACTTTTGCTTTAACTACTAACTTTGATGGCC 838
Query 921 TAGTTTCCTCGAGTTATGATGCTCTGGTCATTCCTGGAGGCAGAGCACCAGAATATCTGG 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TAGTTTCCTCGAGTTATGATGCTCTGGTCATTCCTGGAGGCAGAGCACCAGAATATCTGG 898
Query 981 CCTTGAACGAACATGTCCTTAACATAGTTAAAGAGTTCATGAATTCTGAGAAACCAGTTG 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CCTTGAACGAACATGTCCTTAACATAGTTAAAGAGTTCATGAATTCTGAGAAACCAGTTG 958
Query 1041 CGTCTATTTGCCACGGACAACAGATCTTAGCTGCTGCTGGTGTCCTCAAGGGAAGGAAAT 1100
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CATCTATTTGCCACGGACAACAGATCTTAGCTGCTGCTGGTGTCCTCAAGGGAAGGAAAT 1018
Query 1101 GCACTGCTTATCCAGCCGTGAAACTGAACGTGGTACTTGGAGGAGGAACTTGGCTAGAAC 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GCACTGCTTATCCAGCCGTGAAACTGAACGTGGTACTTGGAGGAGGAACTTGGCTAGAAC 1078
Query 1161 CAGATCCAATCGACAGGTGCTTCACTGACGGGAATCTAGTAACTGGCGCAGCATGGCCTG 1220
||||||||||| || | |||||||||||||| ||||| |||||||||||||||||||| |
Sbjct 1079 CAGATCCAATCCACCGATGCTTCACTGACGGAAATCTGGTAACTGGCGCAGCATGGCCAG 1138
Query 1221 GACACCCGGAGTTTGTTTCACAACTAATGGCTTTGTTGGGCATTCAGGTTTCATTCTAAG 1280
||||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1139 GACACCCAGAGTTTGTGTCACAGCTAATGGCTTTGTTGGGCATTCAGGTCTCATTCTAAG 1198
Query 1281 TTCCATGTTATGTAAA 1296
|||||||||||| |||
Sbjct 1199 TTCCATGTTATGAAAA 1214
> Ahg903313 jgi|Araly1|903313|Al_scaffold_0003_441
Length=384
Score = 243 bits (131), Expect = 4e-63
Identities = 164/179 (92%), Gaps = 5/179 (3%)
Strand=Plus/Plus
Query 728 GATTATATGGAAGACTATGAAGTCAAAGTGCCTTTCCAGTCCCTTCAAGCTTTGGGATGT 787
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 40 GATTATATGGAAGACTATGAAGTCAAAGTCCCTTTCCAGTCCCTTCAAGCTTTGGGATGT 99
Query 788 CAAGTTGATGCGGTTTGTCCAG-A--GAAGAAGGCTGGTGATCGCTGCCCAACTGCAATC 844
|| ||||||||||||||||||| | ||||||| ||| ||| || | |||||| ||||||
Sbjct 100 CATGTTGATGCGGTTTGTCCAGCAAAGAAGAAGACTGATGAACGTTTCCCAACCGCAATC 159
Query 845 CATGAC-T-TTGAGGGTGACCAAACTTACAGTGAGAAACCAGGCCACACTTTTGCTTTA 901
|||||| | ||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 160 CATGACGTCTTGAGGGTGACCAAACTTACAGTGAAAAAACAGGCCACACTTTTGCTTTA 218
Score = 165 bits (89), Expect = 9e-40
Identities = 117/131 (89%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 934 TTATGATGCTCTGGTCATTCCTGGAGGCAGAGCACCAGAATATCTGGCCTTGAACGAACA 993
|||||||| |||||||||||| ||||||||||| ||||||||||| || |||||| ||||
Sbjct 216 TTATGATGATCTGGTCATTCCGGGAGGCAGAGCTCCAGAATATCTAGCATTGAACAAACA 275
Query 994 TGTCCTTAACATAGTTAAAGAGTTCATGAATTCTGAGAAACCAGTTGCGTCTATTTGCCA 1053
||||||||||| | ||||||||||||||||||||||||||||||| | |||| || |||
Sbjct 276 CGTCCTTAACATGGGTAAAGAGTTCATGAATTCTGAGAAACCAGTTACATCTACTTCCCA 335
Query 1054 CGGACAACAGA 1064
| |||||||||
Sbjct 336 CAGACAACAGA 346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58278074850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5