BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02730.1
Length=793
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477513 jgi|Araly1|477513|fgenesh2_kg.3__214__AT3G02730.1 861 0.0
> Ahg477513 jgi|Araly1|477513|fgenesh2_kg.3__214__AT3G02730.1
Length=598
Score = 861 bits (466), Expect = 0.0
Identities = 543/580 (94%), Gaps = 5/580 (1%)
Strand=Plus/Plus
Query 59 TCT-TCGTCATCGTCTCTCTGTTGAATTCCT-CAAACAATGCCTCTTTCTCTCCGTCTTT 116
||| ||||||||||| |||||||||||| || |||||||||||||| |||||||||||||
Sbjct 21 TCTCTCGTCATCGTCACTCTGTTGAATT-CTCCAAACAATGCCTCTCTCTCTCCGTCTTT 79
Query 117 CTCCTTCGCCGACGGCTTTATCTCCGACTACCGGAGGATTTGGTCCATCGAGGAAACAGT 176
||||||| |||||||||||| ||||||| ||||||||||||||||||||| |||||||||
Sbjct 80 CTCCTTCTCCGACGGCTTTAGCTCCGACCACCGGAGGATTTGGTCCATCGCGGAAACAGT 139
Query 177 GCCGGATTCCTTACTCCGGCGTCCCGACGACGAAGATTGGTTTCTGTTCTTTGGATTCTA 236
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 140 GCCGGATTCCTTTCTCCGGCGTCGCGACGACGAAGATTGGTTTCTGTTCTTTGGATAATG 199
Query 237 GGAAAAGAGGAGATTCCTCTGTTGTTAGGTGTAGCTTAGAAACCGTTAATGTCAGTGTTG 296
||||||| |||||||| ||||| ||||| ||||||||||| ||||| |||||||||||||
Sbjct 200 GGAAAAGTGGAGATTCATCTGTGGTTAGATGTAGCTTAGAGACCGTGAATGTCAGTGTTG 259
Query 297 GTCAGGTGACGGAGGTCGATAAGGACACGTTCTGGCCCATCGTTAAAGCCGCCGGTGAAA 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 GTCAGGTGACGGAGGTCGATAAGGACACGTTCTGGCCCATCGTTAAAGCCGCCGGTGAAA 319
Query 357 AGCTTGTCGTACTTGACATGTACACTCAATGGTGTGGTCCATGTAAAGTGATTGCCCCTA 416
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 320 AGATTGTCGTACTTGACATGTACACTCAATGGTGTGGTCCATGTAAAGTGATTGCTCCTA 379
Query 417 AATACAAAGCTTTATCAGAGAAGTACGACGACGTTGTGTTTCTAAAGCTTGACTGCAATC 476
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 380 AATACAAAGCTTTATCAGAGAAGTACGAGGACGTTGTGTTTCTAAAGCTTGACTGCAAAC 439
Query 477 CAGATAACCGGCCATTGGCAAAAGAGCTAGGAATAAGAGTGGTTCCAACTTTCAAGATTT 536
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 440 CTGATAACCGGCCATTGGCAAAGGAGCTAGGAATAAGAGTGGTTCCAACTTTCAAGATAT 499
Query 537 TGAAGGATAACAAGGTTGTCAAGGAAGTGACCGGTGCAAAATACGATGATCTGGTTGCAG 596
||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 500 TGAAGGACAACAAGGTCGTCAAGGAAGTGACCGGTGCGAAATACGATGATCTGGTTGCAG 559
Query 597 CGATTGAAACAGCGAGGTCTGCTGCTTCCGG-ATGAACCA 635
|||| |||||||| ||||||| || ||| || || |||||
Sbjct 560 CGATCGAAACAGCAAGGTCTGTTGGTTC-GGCATAAACCA 598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29278400256
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5