BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02740.1
Length=1677
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477514 jgi|Araly1|477514|fgenesh2_kg.3__215__AT3G02740.1 2540 0.0
> Ahg477514 jgi|Araly1|477514|fgenesh2_kg.3__215__AT3G02740.1
Length=1644
Score = 2540 bits (1375), Expect = 0.0
Identities = 1574/1666 (94%), Gaps = 29/1666 (2%)
Strand=Plus/Plus
Query 2 CCTAAATCGTACTCCACCGCCAAACTATActtttctttcttttgctttttttcttctctt 61
|||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1 CCTAAATCTTACTCCACCGCCAAACTATACTTTTCTTTCTTTTG-------------CTT 47
Query 62 catttttttcgtttggatttctCAACTAACTTAGTTAGGGATATCTCCGGTCATGGATCT 121
| |||||| | || | |||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 48 C--TTTTTT-G---GG-TCTCTCAACTAATTTACTTAGGGATATCTCCGGTAATGGATCT 100
Query 122 CAGGCGGAGACAGTGGTTCTTGTCGGCTATTTTGCTGTCGGCGGCGTTGCTGATTGACCC 181
||||||||||||||||||||||| | | ||||| ||||||||||||||||||||||| |
Sbjct 101 CAGGCGGAGACAGTGGTTCTTGTTGCCGATTTTACTGTCGGCGGCGTTGCTGATTGAGCT 160
Query 182 GCAATTCTCGACGGCGGCGACGGCTTCGGAGAATTTGGTATTTGAAGTTCGAAGCAAGTT 241
||| || |||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 161 GCAGTTATCGACGGCGGCGACGGCTCCGGAGAATTTGGTATTTCAAGTTCGAAGCAAGTT 220
Query 242 CGCCGGAAAAAGAGTAAAAGATCTTGGAGCTCTCAGAGCTCACGACGTCCACCGTCACTC 301
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 CGCCGGAAAAAGAGAAAAAGATCTTGGAGCTCTCAGAGCTCACGACGTCCACCGTCACTC 280
Query 302 AAGACTCCTCTCCGCCATCGATATTCCTCTCGGCGGCGATAGCCAGCCTGAGTCTATTGG 361
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 281 AAGACTCCTCTCCGCCATCGATCTTCCTCTCGGCGGCGATAGCCAGCCTGAGTCTATTGG 340
Query 362 TTTATACTTCGCTAAAATCGGACTCGGAACTCCATCAAGAGACTTCCATGTTCAAGTTGA 421
|||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 341 TTTATACTTCGCCAAAATTGGACTCGGAACTCCATCAAGAGACTTTCATGTGCAAGTTGA 400
Query 422 TACAGGAAGTGATATCTTATGGGTGAATTGTGCTGGTTGCATCAGATGTCCTAGGAAAAG 481
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 401 TACAGGAAGTGATATCTTGTGGGTGAATTGTGCTGGTTGCATTAGATGTCCTAGGAAGAG 460
Query 482 TGATCTGGTAGAGCTGACACCTTATGATGTGGATGCTTCGTCCACTGCAAAATCTGTTTC 541
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 461 TGATCTGGTAGAGCTGACACCTTATGATGCCGATGCTTCGTCCACTGCAAAATCTGTTTC 520
Query 542 GTGCAGTGACAACTTTTGCTCTTACGTTAACCAAAGATCTGAGTGTCACTCAGGTTCTAC 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 GTGCAGTGACAACTTTTGCTCTTACGTTAACCAAAGATCTGAGTGTCACTCAGGTTCTAC 580
Query 602 TTGTCAGTATGTTATTATGTATGGCGATGGGAGTTCAACTAATGGATACTTGGTGAAAGA 661
||||| ||||||||| ||||||| |||||||| |||||||||||||||||||||| |||
Sbjct 581 ATGTCAATATGTTATTCTGTATGGAGATGGGAGCTCAACTAATGGATACTTGGTGAGAGA 640
Query 662 TGTTGTTCATTTGGATTTAGTTACTGGAAATCGTCAAACCGGTTCCACCAACGGAACTAT 721
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 TGTTGTACATTTGGATTTAGTTACTGGAAATCGTCAAACCGGTTCCACCAACGGAACTAT 700
Query 722 TATCTTCGGATGTGGGTCTAAACAGTCTGGTCAGCTCGGAGAGTCACAAGCTGCGGTTGA 781
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 701 TATCTTCGGATGTGGGTCTAAACAGTCTGGTCAGCTCGGAGAATCCCAAGCTGCGGTTGA 760
Query 782 TGGGATAATGGGATTTGGACAATCAAATTCATCGTTTATATCGCAGCTAGCTTCACAAGG 841
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 761 TGGGATAATGGGATTTGGACAATCGAATTCATCGTTTATATCGCAGCTAGCTTCACAAGG 820
Query 842 AAAGGTCAAAAGGTCTTTTGCGCATTGTTTGGATAACAACAATGGAGGTGGTATATTCGC 901
||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 821 AAAGGTCAAAAGGTCTTTTGCACATTGTTTGGATAATAACAATGGAGGCGGTATATTCGC 880
Query 902 CATTGGAGAAGTCGTGTCGCCGAAAGTAAAGACTACACCTATGCTCTCTAAATCAGCTCA 961
||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 881 CATTGGAGAGGTCGTGTCACCGAAAGTAAAGACTACTCCTATGCTCTCTAAATCAGCTCA 940
Query 962 CTATAGTGTCAACCTCAATGCAATTGAAGTTGGTAATTCAGTTTTAGAACTTTCTTCGAA 1021
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 941 CTATAGTGTCAACCTCAATGCAATTGAAGTTGGTAATTCAGTTTTACAACTTTCTTCGGA 1000
Query 1022 TGCTTTTGATTCGGGAGATGACAAAGGAGTTATTATTGATAGTGGTACAACTCTGGTGTA 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 TGCTTTTGATTCGGGAGATGACAAAGGAGTTATTATTGATAGTGGTACAACTCTGGTGTA 1060
Query 1082 TCTTCCTGATGCTGTTTATAACCCGTTACTGAATGAGATATTGGCTTCACATCCA-GAGC 1140
|||||||||||||||||||||||||||| ||||| |||| |||||||||||| || ||||
Sbjct 1061 TCTTCCTGATGCTGTTTATAACCCGTTAATGAATCAGATTTTGGCTTCACAT-CAGGAGC 1119
Query 1141 TTACTTTGCATACAGTTCAAGAGTCGTTTACTTGTTTCCATTATACAGACAAATTAGATC 1200
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1120 TTACTTTGCATACAGTTCAAGATTCGTTTACTTGTTTCCATTATACAGACAAATTAGATC 1179
Query 1201 GGTTCCCAACTGTCACTTTTCAGTTTGACAAGTCTGTTTCATTGGCGGTTTATCCTCGGG 1260
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1180 GGTTCCCAACTGTCACTTTTCAGTTCGACAAGTCTGTTTCATTGGCGGTTTATCCTCGGG 1239
Query 1261 AATATCTATTCCAAGTTCGAGAAGACACATGGTGTTTTGGCTGGCAAAATGGTGGATTGC 1320
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1240 AATATCTATTCCAAGTTCGAGAAGACACATGGTGTTTTGGCTGGCAAAACGGTGGATTGC 1299
Query 1321 AGACTAAAGGAGGAGCTTCATTAACAATTCTTGGAGACATGGCCCTCTCTAACAAGTTAG 1380
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 AGACTAAAGGAGGAGCATCATTAACAATTCTTGGAGACATGGCCCTCTCTAACAAGTTAG 1359
Query 1381 TTGTCTACGATATCGAAAACCAAGTCATTGGATGGACCAATCACAACTGCTCAGGAGGAA 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 TTGTCTACGATATCGAAAACCAAGTCATTGGATGGACCAATCACAACTGCTCAGGAGGAA 1419
Query 1441 TACAAGTCAAGGATGAAGAAAGTGGAGCAATCTATACTGTTGGTGCTCACAACCTCTCAT 1500
||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||
Sbjct 1420 TACAAGTCAAGGATGAAGAAACTGGAGCAATCTACACTGTTGGTGCACACAACCTCTCAT 1479
Query 1501 GGTCGTCTTCTTTAGCTATTACAAAACTTCTTACACTTGTTTCTCTCTTAATTCCTTTCT 1560
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1480 GGTCGTCTTCTTTAGCTATTACAAAACTTCTTACAATTGTTTCTTTCTTAATTCCTTTCT 1539
Query 1561 TCTGTAACGTTGCTTTATAGTTTCAGATAAAAACCCTCTTGGGACAAAGTTTATTCCTTC 1620
|||| ||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| |
Sbjct 1540 TCTGCAACATTGCTTTATAGTTTCAGATAAAA-CCCTCTTGGGACAAAGTATATTCCTAC 1598
Query 1621 TGTTGTT--TA-T--C-ATTAAAGGAACTGATTCCCATTTCTTGAA 1660
||||||| | | | ||||||||| ||||||||||||| |||||
Sbjct 1599 TGTTGTTAGTTGTTACCATTAAAGGATCTGATTCCCATTTGTTGAA 1644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62886994495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5