BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02750.3
Length=2276
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477517 jgi|Araly1|477517|fgenesh2_kg.3__218__AT3G02750.2 1748 0.0
> Ahg477517 jgi|Araly1|477517|fgenesh2_kg.3__218__AT3G02750.2
Length=2696
Score = 1748 bits (946), Expect = 0.0
Identities = 1043/1087 (96%), Gaps = 17/1087 (2%)
Strand=Plus/Plus
Query 1194 CAGCTGAGGCAGAGAGAATAAGAAAGTGTCGAGGACGAGTGTTTGCTCTTAGAGATGAAC 1253
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1620 CAGCTGAGGCAGAGAGAATAAGAAAGTGTCGAGGACGGGTGTTTGCACTTAGAGATGAAC 1679
Query 1254 CTGAAGTTTGTAGAGTTTGGCTGCCAAATTGTGACTCACCTGGACTTGCTATGGCACGTG 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 CTGAAGTTTGTAGAGTTTGGCTGCCAAATTGTGACTCACCTGGACTTGCTATGGCACGTG 1739
Query 1314 CTTTTGGTGACTTTTGCCTTAAAGATTTTGGCCTAATCTCTGTGCCTGATGTATCTTTCC 1373
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 CTTTTGGAGACTTTTGCCTTAAAGATTTTGGCCTAATCTCTGTGCCTGATGTATCTTTCC 1799
Query 1374 GTC-AGTTAACCGAAAAAGATGAGTTTATAGTGTTGGCTACAGATGGGATTTGGGATGTT 1432
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 GTCGA-TTAACCGAAAAAGATGAGTTTATAGTGTTGGCTACAGATGGGATTTGGGATGTT 1858
Query 1433 CTCTCAAATGAAGATGTAGTGGCGATTGTAGCTTCAGCTCCATCGCGCTCCTCTGCAGCA 1492
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 CTCTCAAATGAAGATGTAGTGGCGATTGTAGCTTCAGCTCCATCGCGCTCCTCTGCAGCT 1918
Query 1493 AGAGCTTTAGTCGAGTCTGCGGTCAGAGCTTGGAGATACAAATACCCGACTTCCAAAGTC 1552
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1919 AGAGCTTTAGTCGAGTCTGCAGTTAGAGCTTGGAGATACAAATACCCGACTTCCAAAGTC 1978
Query 1553 GATGACTGTGCCGCTGTTTGCTTGTATCTAGACTCCAGCAACACAAACGCCATATCTACA 1612
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1979 GATGACTGTGCCGCTGTTTGCTTGTATCTAGACTCCAACAACACAAACGCCATATCTACA 2038
Query 1613 GCTTCTTCCATCTCCAAACTTGAAGATGGAGAAGAAGAAGAACTAAAAGCCA-CGACTGA 1671
|||||||||||||||||||| ||||||| | | ||||||||||||||||| | | |||||
Sbjct 2039 GCTTCTTCCATCTCCAAACTGGAAGATG-A-A-GAAGAAGAACTAAAAGC-AGCAACTGA 2094
Query 1672 GGATGATGATGCATCAGGACCAAGCGGTCTAGGCCGTTCGAGTACTGTCAGGTCGGGGAA 1731
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2095 GGATGATGATGCATCAGGACCAAGCGGTCTAGGCCGTTCGAGTACTGTCAGGACGGGGAA 2154
Query 1732 AGAGATTGCTCTCGACGAAAGTGAAACTGAGAAGCTGATAAAAGAAGCGGATAACTTGGA 1791
|||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2155 AGAGATTGCTCTTGATGAAAGTGAAGCTGAGAAGCTGATAAAAGAAGCGGATAACTTGGA 2214
Query 1792 TTCAGAACCTGGAACAGAGTATTCTGCACTTGAAGGTGTTGCAAGAGTTAATACACTTTT 1851
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2215 TTCTGAACCTGGAACAGAGTATTCTGCACTAGAAGGTGTTGCAAGAGTTAATACACTTTT 2274
Query 1852 AAACTTACCAAGATTTGTGCCTGGAAAGTGAATAGAGAAAGAAGAGTTGAAGTG-AAGAA 1910
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 2275 AAACTTACCAAGATTTGTGCCTGGAAAGTGAAAAGAGAAAGAAGAGTTGAAGTGGAAGAA 2334
Query 1911 GTTGAGAGGTGATTAATGATATCAAA-TAAATCACCCAAGACAAGGTACTGTGtcttttt 1969
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2335 GTTGAGAGGTGATAAATGATATCAAAATAAATCACCCAAGACAAGGTACTGTGTCTTTTT 2394
Query 1970 gttcttttgtttttccttttcaactttctt-cattgatctctattctttttt-gAGTCAT 2027
|||| ||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 2395 GTTCATTTGTTTTTCCGTTTCAACTTTCTTACATTGATCTCTATTCTTTTTTTGAGTCAT 2454
Query 2028 AATTCATTGGTTTTGGAACCTAAAtttttgtcagttttgtctttggtttatgtctttctc 2087
|||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct 2455 AATTCATTGGTTTTGGAACCTAAATTTTTGTCAGTTTTGTCTTT--TAT-TGTCTTTCTC 2511
Query 2088 tcttgttaatgtttatgttgttttttggtcttgtcAGTAAAGAAGAGTGAAAAAACATCA 2147
||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 2512 TCTTGTTGATGTTTATGCTGTTTTTTGGTCTTGTCAGTAAAGAAGAGTGAAAAA-CATCA 2570
Query 2148 CATCATGTAATAATGGCTTGTGTCTGTAATTCTGTGAATCCCCTCAGGCTTAATTTTGTC 2207
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2571 CATGATGTAATAATGGCTTGTGTCTGTAATTCTGTGATTCCCCTCAGGCTTAATTTTGTC 2630
Query 2208 AGTCTGTTGGGACAATTTCCTGTTTCTGTCTTTTCAAAAAGCTCCAATTCCA-GTTACAG 2266
|||||||||||| |||||||||||| | |||||||||||||||||||||||| || ||||
Sbjct 2631 AGTCTGTTGGGAAAATTTCCTGTTTTTATCTTTTCAAAAAGCTCCAATTCCAAGT-ACAG 2689
Query 2267 AATTTGT 2273
|||||||
Sbjct 2690 AATTTGT 2696
Score = 1522 bits (824), Expect = 0.0
Identities = 906/945 (96%), Gaps = 7/945 (1%)
Strand=Plus/Plus
Query 149 AGAGATCTCTTTTGCATAGTTTGAATCATCATTGCTCTTTCCGGTGAGAATTGTGATCTA 208
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 683 AGACATCTCTTTTGCATAGTTTGAATCATCATTGCTCTTTGCGGTGAGAATTGTGATCTA 742
Query 209 AAGGTTCAATCTTTCTCGCTGGAGGACCGTCGGGGTGATTGTACCATTGTTGGTCTGGAG 268
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 743 AAGGTTCAATCTTTCTCGCTGGAGGACCGTGGGGGTGATTGTTCCATTGTTGGTCTGGAG 802
Query 269 TGCCTGCTCAATATAATCAGGGCCCTTAAAATGGGGTCCTGTTTATCTGCAGAGAGCAGG 328
||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 803 TGCCTTCTTAATATAATCAGGGCCCTTAGGATGGGGTCCTGTTTATCTGCAGAGAGCAGG 862
Query 329 AGCCCTAGACCGGGCTCTCCTTGCTCTCCTGCTTTTAGTGTGAGGAAGAGGAAGAACTCT 388
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 863 AGCCCTAGACCGGGCTCTCCTTGCTCTCCTGCTTTCAGTGTGAGGAAGAGGAAGAACTCT 922
Query 389 AAGAAGCGACCTGGTTCTAGGAACTCTTCCTTTGATTACCGGAGAGAAGAACCGTTGAAT 448
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 923 AAGAAGCGACCTGGTTCTAGGAACTCTTCCTTTGATTACAGAAGAGAAGAACCGTTGAAT 982
Query 449 CAGGTTCCGGGCCGGATGTTCTTGAATGGATCAACTGAGGTTGCTTGTATCTACACTCAA 508
||||||||||| || ||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 983 CAGGTTCCGGGGCGCATGTTCTTGAATGGATCAAGTGAGGTTGCTTGTATCTTCACTCAA 1042
Query 509 CAAGGCAAGAAAGGGCCTAATCAAGATGCCATGGTTGTTTGGGAGAATTTTGGTTCGAGG 568
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1043 CAAGGCAAGAAAGGGCCTAATCAAGATGCCATGGTTGTTTGGGAGGATTTTGGTTCGAGG 1102
Query 569 ACAGATACAATCTTCTGTGGAGTGTTTGATGGACATGGTCCATATGGTCATATGGTTGCA 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 ACAGATACAATCTTCTGTGGAGTGTTTGATGGACATGGTCCATATGGTCATATGGTTGCA 1162
Query 629 AAGAGAGTCAGAGACAATCTTCCTCTCAAATTAAGTGCTTATTGGGAAGCAAAAGTACCA 688
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 AAGAGGGTTAGAGACAATCTTCCTCTCAAATTAAGTGCTTATTGGGAAGCAAAAGTACCA 1222
Query 689 GTTGAAGGTGTTCTTAAGGCAATCACCACCGACACTGTCAATAATGT-AACCAACATTAA 747
||||||||||| || |||||||||||||| || || || |||||| | ||| ||||||||
Sbjct 1223 GTTGAAGGTGTCCTAAAGGCAATCACCACAGAAACCGTTAATAAT-TCAACGAACATTAA 1281
Query 748 CAACCCTGAAGAtgctgctgctgctgctgctTTTGTCA-CTGCTGAAGAAGAACCTAGGA 806
|||||||||||| ||||||||||||||||||||| | |||||||||||||| ||||||
Sbjct 1282 CAACCCTGAAGA---TGCTGCTGCTGCTGCTTTTGT-ATCTGCTGAAGAAGAAACTAGGA 1337
Query 807 CATCTGCTGACATGGAGGAGGAGAACACAGAAACCCAACCGGAATTGTTTCAAACGCTGA 866
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1338 CATCTGCTGACATGGAGGAGGAGAACACGGAATCCCAACCGGAATTGTTTCAAACGCTGA 1397
Query 867 AAGAGTCGTTTCTTAAGGCTTTTAAAGTTATGGATAGAGAGCTTAAATTCCATGGAAGTG 926
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1398 AAGAGTCGTTTCTTAAGGCTTTTAAAGTTATGGATAGAGAACTTAAATTCCATGGAAGTG 1457
Query 927 TTGACTGTTTCTGCAGTGGGACAACAGCTGTAACCTTGATCAAGCAGGGTCAGTATCTCG 986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1458 TTGACTGTTTCTGCAGTGGGACAACAGCTGTAACCTTGATCAAGCAGGGTCAGTATCTCG 1517
Query 987 TTGTTGGAAATGTTGGGGATTCCAGAGCTGTAATGGGTACAAGAGACAGTGAAAATACTC 1046
||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||
Sbjct 1518 TTGTTGGAAATGTTGGGGACTCTAGAGCTGTAATGGGTACAAGAGACAGTGAAAATGCTC 1577
Query 1047 TTGTCGCTGTTCAACTAACTGTGGATCTTAAGCCAAATCTCCCAG 1091
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1578 TTGTCGCTGTTCAACTAACTGTGGATCTTAAGCCAAATCTCCCAG 1622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85703051250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5