BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02760.1
Length=2881
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477518 jgi|Araly1|477518|fgenesh2_kg.3__219__AT3G02760.1 2479 0.0
> Ahg477518 jgi|Araly1|477518|fgenesh2_kg.3__219__AT3G02760.1
Length=1556
Score = 2479 bits (1342), Expect = 0.0
Identities = 1461/1518 (96%), Gaps = 10/1518 (1%)
Strand=Plus/Plus
Query 1227 GCAATGTGG-GGAGCAAATCTTAAATCTTTTCAACCCAGAGGGTCGCAGTTTTGATAGCT 1285
|||||| || |||||||||| |||||||| |||| || |||||||| ||||||||||||
Sbjct 24 GCAATG-GGTGGAGCAAATCGTAAATCTTATCAATCCTGAGGGTCGTGGTTTTGATAGCT 82
Query 1286 TGTTGGATAAAGTGAAAGAGATTGTAGAAAGTAATGAAAATAGGAGACTTCCCAAGCTTC 1345
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 83 TCTTGGATAAAGTGAAAGAGATTGTAGAAAGTAATGAAAACAGGAGACTTCCCAAGCTTC 142
Query 1346 CAAAGGGAACTCGAGATTTCGCTAAAGAACAAATGGCAGTCCGAGAAAAAGCCTTTTCAA 1405
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 143 CAAAGGGAACTCGAGATTTTGCTAAAGAACAAATGGCAGTCCGAGAAAAAGCCTTTTCAA 202
Query 1406 TCATACAAAACGTTTTCAAGAGGCATGGTGCAACTGCACTTGATACTCCTGTTTTTGAAT 1465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 TCATACAAAACGTTTTCAAGAGGCATGGTGCAACTGCACTTGATACTCCTGTTTTTGAAT 262
Query 1466 TGAGAGAGACCCTTATGGGAAAGTACGGAGAAGACTCGAAATTGGTTTATGATATTGCTG 1525
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 263 TGAGAGAGACCCTTATGGGAAAGTACGGAGAAGACTCAAAATTGGTTTATGATATTGCTG 322
Query 1526 ATCAGGGTGGAGAGCTTTGCTCTTTACGATATGATCTAACTGTTCCATTTGCACGGTATG 1585
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 323 ATCAGGGTGGAGAGCTTTGCTCTTTACGATATGATTTAACTGTTCCATTTGCACGGTATG 382
Query 1586 TGGCTATGAATGGAATCACATCATTCAAAAGATACCAAATAGCAAAGGTGTACAGAAGGG 1645
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 TGGCGATGAATGGAATCACATCATTCAAAAGATACCAAATAGCAAAGGTGTACAGAAGGG 442
Query 1646 ATAATCCATCTAAAGGGAGATACAGAGAGTTTTATCAGTGTGATTTTGATATCGCTGGTT 1705
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 ATAATCCATCCAAAGGGAGATACAGAGAGTTTTATCAGTGTGATTTTGATATCGCTGGTT 502
Query 1706 TGTTCGAACCAATGGGACCCGATTTTGAAATTGTCAAGATATTAACTGAACTCCTCGATG 1765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 TGTTCGAACCAATGGGACCCGATTTTGAAATTGTCAAGATATTAACTGAACTCCTCGATG 562
Query 1766 AGTTAGAAATAGGAGATTATGAGGTGAAACTGAATCACCGCAAGTTGCTTGATGGAATGC 1825
| || || || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 AATTGGAGATTGGAGATTATGAGGTGAAACTGAATCACCGCAAGTTGCTTGATGGAATGC 622
Query 1826 TGGAGATATGTGGAGTACCACCTGAGAAATTCAGAACCATCTGTTCGAGTATCGACAAGC 1885
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 TGGAGATATGTGGAGTACCACCTGAGAAATTCAGAACCATCTGTTCGAGTATCGACAAGT 682
Query 1886 TAGACAAGCAATCGTTTGAGCAAGTGAAGAAAGAAATGGTGGAGGAGAAGGGCTTGTCTT 1945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 TAGACAAGCAATCGTTTGAGCAAGTGAAGAAAGAAATGGTGGAGGAGAAGGGCTTGTCTT 742
Query 1946 CAGAGATTGCAGACAGAATTGGCAACTTCGTTAAGGAGAAGGGAGCTCCTTTGGAGCTGT 2005
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 743 CAGAGATTGCAGACAGAATTGGCAACTTTGTTAAGGAGAAGGGAGCTCCTTTGGAGCTAT 802
Query 2006 TGTCTAAACTGAGACAAGAAGGGAGTGAGTTCTTAGATAACCAGTCATCAAGAGAAGCTC 2065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 TGTCTAAACTGAGACAAGAAGGGAGTGAGTTCTTAGATAACCAGTCATCAAGAGAAGCTC 862
Query 2066 TTGATGAGTTGAGTATCATGTTTGAAGCTCTTAAAAGATCAAAGTGCAGTGAGAGAATAG 2125
| |||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||
Sbjct 863 TGGATGAGTTGAGTATCATGTTTGAAGCTCTTGAAAGATCAAAGTGCAGTCACAGAATAG 922
Query 2126 TCTTTGATCTAAGTCTAGCTAGAGGTCTTGATTACTACACCGGCGTCATCTTTGAAGCTG 2185
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 923 TCTTTGATCTAAGTCTAGCTAGAGGTCTTGATTACTACACGGGCGTCATCTTTGAAGCTG 982
Query 2186 TTTGTATAGGAGCAGAGGTGGGATCAATTGGTGCTGGTGGGCGATATGATAACCTTATAG 2245
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 983 TTTGTATAGGAGCAGAGGTGGGATCAATTGGTGCTGGTGGGCGATACGATAACCTTATAG 1042
Query 2246 GAATGTTTGGAACAAAGCAAGTCCCTGCGGTTGGGATGAGCCTGGGAATCGAGAGAGTGT 2305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 GAATGTTTGGAACAAAGCAAGTCCCTGCGGTTGGGATGAGCCTGGGAATCGAGAGAGTGT 1102
Query 2306 TTAACATAATGGAAGAACTTAACGAGAAACAGAAACAAGTGATTCGACCAACGGAGACAC 2365
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 TTAACATAATGGAAGAGCTTAACGAGAAACAGAAACAAGTGATTCGACCAACGGAGACAC 1162
Query 2366 AGGTGTTGGTTAGTATAATGGTGGATAATAAACTAGCGGAAGCAGCAGAACTGGTAAGTC 2425
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1163 AGGTTTTGGTTAGTATAATGGTGGATAATAAACTAGCGGAAGCAGCAGAACTGGTTAGTC 1222
Query 2426 AGTTATGGGGTGCTAAGATCAACGCAGAGTATCTAGTGAGCAAGAGGAAAGAAAAGCATT 2485
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1223 GGTTATGGGATGCTAAGATCAACGCAGAGTATCTTGTGAGCAAGAGGAAAGAAAAGCATT 1282
Query 2486 TCAATCGTGCAAAGGAATCAGGGATTCCTTGGATGGTGATGGTAGGCGAAAAAGAACTCA 2545
||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 1283 TCAATCGAGCAAAGGAATCAGGGATTCCCTGGATGGTGATGGTAGGAGAAAAGGAACTCA 1342
Query 2546 GTGGAAGTTTTGTGACATTGAAGAAGCTCGAGAAGGGAAGTGAAGAGAAAGAAGATCAAA 2605
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1343 GTGGAGGTTTTGTGACATTGAAGAAGCTCGAGAAGGGAAGTGAAGAGAAAGAAGATCAAA 1402
Query 2606 CATGTACTAGAGATCGTTTCGTGGAAGAATTGAAGAAACTACTCTGAGTCGTTGAAAAGA 2665
||||| |||||||| ||||||||| ||||||| ||||||||| |||| ||||||||||
Sbjct 1403 CATGTTCTAGAGATAGTTTCGTGGGAGAATTGTTGAAACTACT--GAGTTGTTGAAAAGA 1460
Query 2666 AATGAAAGGTACACACACTCACTCC-TGGTTCGATGCCCAGACAAAAGGAATCACA--GT 2722
||||||||||||||| ||||||| |||| ||||||||||| ||||||||||| | ||
Sbjct 1461 GATGAAAGGTACACAC--TCACTCCCTGGTCCGATGCCCAGAAAAAAGGAATCATACTGT 1518
Query 2723 GTTTTGCATTCTTTTTTG 2740
|||||||||| |||||||
Sbjct 1519 GTTTTGCATT-TTTTTTG 1535
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108747649475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5