BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02770.1
Length=761
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477519 jgi|Araly1|477519|fgenesh2_kg.3__220__AT3G02770.1 998 0.0
Ahg488497 jgi|Araly1|488497|fgenesh2_kg.6__1631__AT5G16450.1 582 1e-165
> Ahg477519 jgi|Araly1|477519|fgenesh2_kg.3__220__AT3G02770.1
Length=733
Score = 998 bits (540), Expect = 0.0
Identities = 661/715 (92%), Gaps = 25/715 (3%)
Strand=Plus/Plus
Query 16 AAACAAGTATGTTGATGACTTTGTTCTCCTTTAAATTATCATCACTTCATTTCTCAGAGA 75
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 AAACAAGTATGTTGATGACTTTGTTCTCCTTTAAATTATCATCACTCCATTTCTCAGAGA 60
Query 76 TTTACGCACACAGAG--TTCTCTTC-----T-TCGTCCTA--GTTTCTTCTATTCCAGGT 125
|| ||||||||||| |||||||| | || ||| | |||||||||||| |||||
Sbjct 61 CTTGCGCACACAGAGTTTTCTCTTCTTTTTTATCATCCGAGTGTTTCTTCTATTTCAGGT 120
Query 126 GAGAAGAAAAAATGGCGTTTGTGACCACTGCGGAAGTGTGTGACGCGAATCAAGAGA-TG 184
||||| |||| |||||||||||||||||||||||||| ||||||||||||||||| | ||
Sbjct 121 GAGAACAAAATATGGCGTTTGTGACCACTGCGGAAGTTTGTGACGCGAATCAAGA-ACTG 179
Query 185 ATTCGAAGTGGCCAGCTCCGAGCTCTGCAACCCGTTTTTCAGATTTATGGTCGTCGTCAA 244
||||| ||||||||||||||||||||||||||| ||| |||||||| ||||||||||||
Sbjct 180 ATTCGTAGTGGCCAGCTCCGAGCTCTGCAACCCAATTTCCAGATTTACGGTCGTCGTCAA 239
Query 245 ATATTTTCAGGTCCAGTAGTTACTGTTAAAGTCTTTGAAGACAATGGCTTAATCCGTCAC 304
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 240 ATATTTTCAGGTCCAGTAGTTACTGTCAAAGTATTTGAAGACAATGGCTTAATCCGTCAC 299
Query 305 TTCCTCGAAGAGAAAGGCAATGGTAGAGTTCTTGTGGTGGATGGTGGAGGGAGTTTACGC 364
||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 300 TTCCTCGAAGAAAAAGGGAATGGAAGAGTTCTTGTGGTGGATGGTGGAGGGAGTTTACGC 359
Query 365 TGTGCGATACTAGGAGGAAACCCGGTCGTACAAGCGCAGAACAACGGATGGGCAGGGATC 424
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 360 TGTGCGATACTAGGAGGAAACCCGGTAGTACAAGCGCAGAACAACGGATGGGCAGGGATC 419
Query 425 ATAGTGAATGGATGCATCAGAGACGTTGATGAGATCAATGGTTGCGACATTGGAGTGAGA 484
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ATAGTGAACGGTTGCATCAGAGACGTTGATGAGATCAATGGTTGCGACATTGGAGTGAGA 479
Query 485 GCTTTAGCTTCTCATCCAATAAAGGCTAGTAAGAAAGGACTTGGTGAACAAAGAGTCTCT 544
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 480 GCTTTGGCTTCTCATCCAATAAAAGCTAGTAAGAAAGGACTTGGTGAACAAAGAGTCCCT 539
Query 545 TTGAACATTGCAGGCACTCGGATATGCGATGGCGAATGGCTTTATGCAGATACTGATGGT 604
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTGAACATAGCAGGCACTCGGATATGCGATGGCGAATGGCTTTATGCAGATACTGATGGT 599
Query 605 ATCCTTGTTTCTCAGATTGAATTATCCGTTTAAAAGGACACAAGTGATGTTGTTGATTTG 664
||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
Sbjct 600 ATCCTTGTTTCTCAGATTGAATTATCCGTTTAAAAGGACGCAAGTGATGTTGA--ATCT- 656
Query 665 TTAAAATCTGTAAGCTACTACTTTTGTGCTTTGTGTTT-CTGTAATGGCTATCAG 718
| | ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 657 T--------G-AAGCTACTACTTTTGTGCTTTGTGTTTTCTGTAATGGCTATCAG 702
> Ahg488497 jgi|Araly1|488497|fgenesh2_kg.6__1631__AT5G16450.1
Length=801
Score = 582 bits (315), Expect = 1e-165
Identities = 457/525 (87%), Gaps = 12/525 (2%)
Strand=Plus/Plus
Query 119 TCCAGGTGAGAA-GAA-AAAATGGCGTTTGTGACCACTGCGGAAGTGTGTGACGCGAATC 176
|||||| || || ||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 187 TCCAGG-GA-AACGAAGAAAATGGCGTTTGTGACAACTGCGGAAGTTTGTGACGCGAATC 244
Query 177 AAGAGATGATTCGAAGTGGCCAGCTCCGAGCTCTGCAACCCGTTTTTCAGATTTATGGTC 236
||||| ||||||| ||||| ||||| |||||| |||||||| |||| ||||||||||| |
Sbjct 245 AAGAGCTGATTCGGAGTGGTCAGCTACGAGCTTTGCAACCCATTTTCCAGATTTATGGCC 304
Query 237 GTCGTCAAATATTTTCAGGTCCAGTAGTTACTGTTAAAGTCTTTGAAGACAATGGCTTAA 296
|||| |||||||| ||||| ||||| |||||||| ||||| |||||||||||||||||||
Sbjct 305 GTCGACAAATATTCTCAGGACCAGTTGTTACTGTCAAAGTATTTGAAGACAATGGCTTAA 364
Query 297 TCCGTCACTTCCTCGAAGAGAAAGGCAATGGTAGAGTTCTTGTGGTGGATGGTGGAGGGA 356
||||||| ||| |||| |||||||| || ||||||||||||||||||||||||||||| |
Sbjct 365 TCCGTCAATTCATCGAGGAGAAAGGAAACGGTAGAGTTCTTGTGGTGGATGGTGGAGGAA 424
Query 357 GTTTACGCTGTGCGATACTAGGAGGAAACCCGGTCGTACAAGCGCAGAACAACGGATGGG 416
|| ||| ||||| ||||| ||||| ||||| || || ||||| ||||||||||||||||
Sbjct 425 GTCAACGATGTGCAATACTCGGAGGTAACCCCGTGGTTCAAGCTCAGAACAACGGATGGG 484
Query 417 CAGGGA-TCATAGTGAATGGATGCATCAGAGACGTTGATGAGATCAATGGTTGCGACATT 475
| |||| || | ||||| ||||||||||||||||| ||||||||||| ||||| || ||
Sbjct 485 C-GGGAATCGTTGTGAACGGATGCATCAGAGACGTCGATGAGATCAACGGTTGTGATATC 543
Query 476 GGAGTGAGAGCTTTAGCTTCTCATCCAATAAAGGCTAGTAAGAAAGG-ACTTGGTGAACA 534
|||||||||||||| || |||||||| |||||||| ||||| ||||| |||||| |||||
Sbjct 544 GGAGTGAGAGCTTTGGCCTCTCATCCGATAAAGGCGAGTAA-AAAGGGACTTGGAGAACA 602
Query 535 AAGAGTCTCT--TTGAACATTGCAGGCACTCGGATATGCGATGGCGAATGGCTTTATGCA 592
| |||| || || ||||||||||| |||||||| || ||||| |||||||||||||||
Sbjct 603 ACGAGT-TCCGGTT-AACATTGCAGGGACTCGGATTTGTGATGGAGAATGGCTTTATGCA 660
Query 593 GATACTGATGGTATCCTTGTTTCTCAGATTGAATTATCCGTTTAA 637
||||||||||| || ||||| || |||||||| ||||||||||||
Sbjct 661 GATACTGATGGGATTCTTGTCTCCCAGATTGAGTTATCCGTTTAA 705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28058466912
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5