BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02780.1
Length=1036
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477520 jgi|Araly1|477520|fgenesh2_kg.3__221__AT3G02780.1 1456 0.0
Ahg488496 jgi|Araly1|488496|fgenesh2_kg.6__1630__AT5G16440.1 857 0.0
Ahg926660 jgi|Araly1|926660|scaffold_202221.1 302 4e-81
Ahg899893 jgi|Araly1|899893|Al_scaffold_0004_543 278 7e-74
> Ahg477520 jgi|Araly1|477520|fgenesh2_kg.3__221__AT3G02780.1
Length=901
Score = 1456 bits (788), Expect = 0.0
Identities = 866/904 (96%), Gaps = 3/904 (0%)
Strand=Plus/Plus
Query 1 GCATCAGTCATCACCACATGCGACACACCAACACCAATGTCTGCTTCTTCTTTATTTAAT 60
|||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 GCATCAGTGATCAGCACATGCGAGACACCAACACCAATGTCTGCTTCTTCTTTATTTAAT 60
Query 61 CTCCCATTGATTCGCCTCAGATCTCTCGCTCTTTCGTCTTCTTTTTCTTCTTTCCGATTT 120
|||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||
Sbjct 61 CTCCCATTGATTCGCCTCAGATCTCTCGCTATTTCG--TT-TTCTTCTTCTTTCCGATTT 117
Query 121 GCCCATCGTCCTCTGTCATCGATTTCACCGAGAAAGTTACCGAATTTTCGTGCTTTCTCT 180
| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 118 TCACATCGTCCTCTGTCATCGATTTCCCCGAGAAAGTTACCGACTTTTCGTGCTTTCTCT 177
Query 181 GGTACCGCTATGACAGATACTAAAGATGCTGGTATGGATGCTGTTCAGAGACGTCTCATG 240
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GGTACCGCAATGGCAGATACTAAAGATGCTGGTATGGATGCTGTTCAGAGACGTCTCATG 237
Query 241 TTTGAGGATGAATGCATTCTTGTTGATGAAACTGATCGTGTTGTGGGGCATGACAGCAAG 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 238 TTTGAGGATGAATGCATTCTTGTTGATGAAACTGATCGTGTCCTGGGGCATGACAGCAAA 297
Query 301 TATAATTGTCATCTGATGGAAAATATTGAAGCCAAGAATTTGCTGCACAGGGCTTTTAGT 360
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 298 TATAATTGTCATCTGATGGAAAATATTGAAGCTAAGAATTTGCTTCACAGGGCTTTTAGT 357
Query 361 GTATTTTTATTCAACTCGAAGTATGAGTTGCTTCTCCAGCAAAGGTCAAACACAAAGGTT 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 358 GTATTTTTATTCAACTCGAAGTATGAGTTACTTCTCCAGCAAAGGTCAAACACAAAGGTT 417
Query 421 ACGTTCCCTCTAGTGTGGACTAACACTTGTTGCAGCCATCCTCTTTACCGTGAATCAGAG 480
|| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 418 ACATTCCCTCTCGTGTGGACAAACACTTGTTGCAGCCATCCTCTTTACCGTGAATCAGAG 477
Query 481 CTTATCCAGGACAATGCACTAGGTGTGAGGAATGCTGCACAAAGAAAGCTTCTCGATGAG 540
|||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 478 CTTATCCAAGAAAATGCACTAGGTGTGAGGAATGCTGCACAAAGAAAGCTTCTCGACGAG 537
Query 541 CTTGGTATTGTAGCTGAAGATGTACCAGTCGATGAGTTCACTCCCTTGGGACGTATGCTG 600
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 538 CTTGGTATTGTAGCTGAAGATGTACCAGTCGATGAGTTCACTGCCTTGGGACGTATGCTA 597
Query 601 TACAAGGCTCCTTCTGATGGCAAATGGGGAGAGCATGAACTTGATTACTTGCTCTTCATC 660
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 598 TACAAGGCTCCTTCTGATGGGAAATGGGGAGAGCACGAACTTGATTACTTGCTCTTCATC 657
Query 661 GTGCGAGACGTGAAGGTTCAACCAAACCCAGATGAAGTAGCTGAGATCAAGTATGTGAGC 720
||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 658 GTGCGGGATGTGAAGGTTCAACCAAACCCGGATGAAGTAGCTGATATCAAGTATGTGAGC 717
Query 721 CGGGAAGAGCTGAAGGAGCTGGTGAAGAAAGCAGATGCAGGTGAGGAAGGTTTGAAACTG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CGGGAAGAGCTGAAGGAGCTGGTGAAGAAAGCAGATGCAGGTGAGGAAGGTTTGAAACTG 777
Query 781 TCACCATGGTTCAGATTGGTGGTGGACAATTTCTTGATGAAGTGGTGGGATCATGTTGAG 840
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TCACCATGGTTCAGGTTGGTGGTGGACAATTTCTTGATGAAGTGGTGGGATCATGTTGAG 837
Query 841 AAAGGAACTTTGGTTGAAGCTATAGACATGAAAACCATCCACAAACTCTGAACATCtttt 900
||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 838 AAAGGAACTTTGGGTGAAGCTATAGACATGAAAACCATCCACAAGCTCTAAACATCTTTT 897
Query 901 ttta 904
||||
Sbjct 898 TTTA 901
> Ahg488496 jgi|Araly1|488496|fgenesh2_kg.6__1630__AT5G16440.1
Length=978
Score = 857 bits (464), Expect = 0.0
Identities = 626/706 (89%), Gaps = 4/706 (1%)
Strand=Plus/Plus
Query 190 ATGACAGATACTAAAGATGCTGGTATGGATGCTGTTCAGAGACGTCTCATGTTTGAGGAT 249
||||| ||| |||| ||||| || |||||||||||||||||||| ||||||||||||||
Sbjct 169 ATGACCGATGCTAACGATGCCGGAATGGATGCTGTTCAGAGACGACTCATGTTTGAGGAC 228
Query 250 GAATGCATTCTTGTTGATGAAACTGATCGTGTTGTGGGGCATGACAGC-AAGTATAATTG 308
||||||||||| |||||||||| ||||||||| || || ||||||| | || ||||| ||
Sbjct 229 GAATGCATTCTCGTTGATGAAAATGATCGTGTGGTTGGCCATGACA-CTAAATATAACTG 287
Query 309 TCATCTGATGGAAAATATTGAAGCCAAGAATTTGCTGCACAGGGCTTTTAGTGTATTTTT 368
||||||||||||||| |||||||| ||||||| || ||||| ||||| ||||| |||||
Sbjct 288 TCATCTGATGGAAAAGATTGAAGCTGAGAATTTACTTCACAGAGCTTTCAGTGTGTTTTT 347
Query 369 ATTCAACTCGAAGTATGAGTTGCTTCTCCAGCAAAGGTCAAACACAAAGGTTACGTTCCC 428
||||||||| |||||||||||||||||||||||| | ||||| ||||||||||| |||||
Sbjct 348 ATTCAACTCCAAGTATGAGTTGCTTCTCCAGCAACGTTCAAAAACAAAGGTTACTTTCCC 407
Query 429 TCTAGTGTGGACTAACACTTGTTGCAGCCATCCTCTTTACCGTGAATCAGAGCTTATCCA 488
|| |||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 408 ACTTGTGTGGACAAACACTTGTTGCAGCCATCCTCTTTACCGTGAATCTGAGCTTATTGA 467
Query 489 GGACAATGCACTAGGTGTGAGGAATGCTGCACAAAGAAAGCTTCTCGATGAGCTTGGTAT 548
|| | || || ||||| || |||||||||||||| ||||||||||||||||| || ||
Sbjct 468 AGAGAGTGTGCTTGGTGTAAGAAATGCTGCACAAAGGAAGCTTCTCGATGAGCTCGGGAT 527
Query 549 TGTAGCTGAAGATGTACCAGTCGATGAGTTCACTCCCTTGGGACGTATGCTGTACAAGGC 608
||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||
Sbjct 528 AGTAGCTGAAGATGTACCAGTCAATGAGTTCACTCCCTTGGGACGCATGCTTTACAAGGC 587
Query 609 TCCTTCTGATGGCAAATGGGGAGAGCATGAACTTGATTACT-TGCTCTTCATCGTGCGAG 667
||||||||||| |||||||||||||| |||||||| || | | || ||||||||||| |
Sbjct 588 ACCTTCTGATGGAAAATGGGGAGAGCACGAACTTGACTA-TCTACTTTTCATCGTGCGGG 646
Query 668 ACGTGAAGGTTCAACCAAACCCAGATGAAGTAGCTGAGATCAAGTATGTGAGCCGGGAAG 727
| |||||| || |||||||||| |||||||| ||||||||||||||||||||| ||||||
Sbjct 647 ATGTGAAGCTTGAACCAAACCCGGATGAAGTGGCTGAGATCAAGTATGTGAGCAGGGAAG 706
Query 728 AGCTGAAGGAGCTGGTGAAGAAAGCAGATGCAGGTGAGGAAGGTTTGAAACTGTCACCAT 787
|||| ||||||||||||||||||||||||||||| || |||| | ||||||| || ||||
Sbjct 707 AGCTTAAGGAGCTGGTGAAGAAAGCAGATGCAGGCGATGAAGCTGTGAAACTATCTCCAT 766
Query 788 GGTTCAGATTGGTGGTGGACAATTTCTTGATGAAGTGGTGGGATCATGTTGAGAAAGGAA 847
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 GGTTTAGATTGGTGGTGGACAATTTCTTGATGAAGTGGTGGGATCATGTTGAGAAAGGAA 826
Query 848 CTTTGGTTGAAGCTATAGACATGAAAACCATCCACAAACTCTGAAC 893
|| | |||||||| ||||||||||||||| ||||| ||||||||
Sbjct 827 CTCTCATTGAAGCTGCAGACATGAAAACCATTCACAAGCTCTGAAC 872
> Ahg926660 jgi|Araly1|926660|scaffold_202221.1
Length=306
Score = 302 bits (163), Expect = 4e-81
Identities = 187/198 (94%), Gaps = 3/198 (2%)
Strand=Plus/Plus
Query 67 TTGATTCGCCTCAGATCTCTCGCTCTTTCGTCTTCTTTTTCTTCTTTCCGATTTGCCCAT 126
||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 32 TTGATCCGCCTCAGATCTCTCGCTCTTTCGTCTTC---TTCTTCTTTCCGATTTGCACAT 88
Query 127 CGTCCTCTGTCATCGATTTCACCGAGAAAGTTACCGAATTTTCGTGCTTTCTCTGGTACC 186
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 89 CGTCCTCTGTCATCGATTTCACCGATAAAGTTACCGAATTTTCGTGCTTTCTTTGGTACC 148
Query 187 GCTATGACAGATACTAAAGATGCTGGTATGGATGCTGTTCAGAGACGTCTCATGTTTGAG 246
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 149 GCAATGACAGATACTAAAGATGCTGGTAAGGATGCTGTTCAGAGACGTCTCATGTTTGAA 208
Query 247 GATGAATGCATTCTTGTT 264
|| |||||||||||||||
Sbjct 209 GACGAATGCATTCTTGTT 226
> Ahg899893 jgi|Araly1|899893|Al_scaffold_0004_543
Length=204
Score = 278 bits (150), Expect = 7e-74
Identities = 170/179 (95%), Gaps = 3/179 (2%)
Strand=Plus/Plus
Query 67 TTGATTCGCCTCAGATCTCTCGCTCTTTCGTCTTCTTTTTCTTCTTTCCGATTTGCCCAT 126
||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 19 TTGATCCGCCTCAGATCTCTCGCTCTTTCGTCTTC---TTCTTCTTTCCGATTTGCACAT 75
Query 127 CGTCCTCTGTCATCGATTTCACCGAGAAAGTTACCGAATTTTCGTGCTTTCTCTGGTACC 186
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 76 CGTCCTCTGTCATCGATTTCACCGATAAAGTTACCGAATTTTCGTGCTTTCTCGGGTACC 135
Query 187 GCTATGACAGATACTAAAGATGCTGGTATGGATGCTGTTCAGAGACGTCTCATGTTTGA 245
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 136 GCAATGACAGATACTAAAGATGCTGGTAAGGATGCTGTTCAGAGACGTCTCATGTTTGA 194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38542269087
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5