BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G02790.1

Length=577
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg477521 jgi|Araly1|477521|fgenesh2_kg.3__222__AT3G02790.1          760    0.0  


> Ahg477521 jgi|Araly1|477521|fgenesh2_kg.3__222__AT3G02790.1
Length=538

 Score =  760 bits (411),  Expect = 0.0
 Identities = 458/480 (95%), Gaps = 5/480 (1%)
 Strand=Plus/Plus

Query  17   AATTAGGGTTAGGGTTAGGGCTTCTCCCTTCCTGGCAAATTCATCCCTTTTAGCCGCCAT  76
            ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct  1    AATTAGGGTTAGGGTTAGGGCTTCTCCCTTCCTGGCAAAATCATCCCTTTGAGCCGCCAT  60

Query  77   TGAAGATGACTGGTAAGGCCAAGCCAAAGAAGCATACAGCGAAGGAGATTCAAGCGAAGA  136
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TGAAGATGACTGGTAAGGCGAAGCCAAAGAAGCATACAGCGAAGGAGATTCAAGCGAAGA  120

Query  137  TCGATGCTGCGTTGACTAATCGAGGCGGAGGAAAAGCTGGAATCGCTGATCGGACCGGAA  196
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  121  TCGATGCTGCGTTGACTAATCGCGGCGGAGGAAAAGCTGGAATCGCTGATCGGACCGGAA  180

Query  197  AAGAGAAAGGAGGCCACGCTAAGTACGAGTGTCCTCATTGCAAAATTACGGCTCCAGG-T  255
            ||||||||||||| |||||||||||||||||||| ||||||||||| ||||| || || |
Sbjct  181  AAGAGAAAGGAGGTCACGCTAAGTACGAGTGTCCACATTGCAAAATCACGGCACC-GGAT  239

Query  256  CTTAAGACGATGCAGATCCATCACGAATCGAAGCATCCTAATATCATTTATGAGGAATCA  315
            || |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct  240  CTAAAGACGATGCAGATCCATCACGAATCCAAGCATCCTAAGATCATTTATGAGGAATCA  299

Query  316  AAGCTCGTGAATCTCCATGCTGTTTTAGCACCAGTAGCTGAATCGAAACCTAAACCTGGT  375
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  AAGCTCGTGAATCTCCATGCTGTTTTAGCACCAGTAGCTGAATCGAAACCTAAACCTGGT  359

Query  376  ATCAGGGGAAGCTTGAAGAAGTAACTCTATGTTT-GAATTTTAT-AAAATTTGTTATCTT  433
            |||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||
Sbjct  360  ATCAGGGGAAGCTTGAAGAAGTAACTCTATGTTTCGA-TTTTATCAAAATTTGTTATCTT  418

Query  434  TTGATGTTAAAGAGTGTAATGTGCTACTTCTTACCCCAAAATCTATCATGTTGTTGATGT  493
            ||||| || |||| ||||||||||||||| ||||||| ||||||||||||| ||||||||
Sbjct  419  TTGATTTTGAAGATTGTAATGTGCTACTTTTTACCCCCAAATCTATCATGTAGTTGATGT  478



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21100040717


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5