BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02800.1
Length=961
Score E
Sequences producing significant alignments: (Bits) Value
Ahg903082 jgi|Araly1|903082|Al_scaffold_0003_210 976 0.0
Ahg488502 jgi|Araly1|488502|fgenesh2_kg.6__1636__AT5G16480.1 483 1e-135
> Ahg903082 jgi|Araly1|903082|Al_scaffold_0003_210
Length=612
Score = 976 bits (528), Expect = 0.0
Identities = 586/614 (95%), Gaps = 4/614 (1%)
Strand=Plus/Plus
Query 183 ATGTGTTTGATTATGGAAACGGATGATCAC-AACGGTGAT-GTTTTAGCGCCGCCGTCGA 240
||||||||||||||||||||||| |||||| || | || | |||||||||||||||||||
Sbjct 1 ATGTGTTTGATTATGGAAACGGACGATCACGAA-GCTG-TCGTTTTAGCGCCGCCGTCGA 58
Query 241 ATTTCTCGATGGTTGAAGATGGAATTTATCGATCTGGGTTTCCTCGACCTGAGAATTTCA 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 59 ATTTCTCGATGGTTGAAGATGGAATTTACCGATCTGGGTTTCCTCGACCTGAGAATTTCA 118
Query 301 GTTTCCTTAAAACCCTAAATCTTCGTTCCATCATTTATCTGTGTCCTGAACCATACCCAG 360
||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 119 GTTTCCTCAAAACCCTAAATCTTCGTGCCATCATTTATCTGTGCCCTGAACCATACCCAG 178
Query 361 AGGAGAATCTCAAGTTTCTTGAGGCTAACAACATTAAGCTTTACCAATTTGGAATCGAAG 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AGGAGAATCTCCAGTTTCTTGAGGCTAACAACATTAAGCTTTACCAATTTGGAATCGAAG 238
Query 421 GCAAAACGGATCCTCCAACTCCTATGCCAAAAGATACAGTTTTGGATGCTCTCAAAGTTT 480
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
Sbjct 239 GCAAAACGGATCCTCCAACTCTTATGCCAAAAGATACAGTTTTGGATGCTCTCAGAGTCT 298
Query 481 TAGTTGATGTGAGAAACCATCCAATTCTCATACATTGCAAACGCGGGAAGCATAGGACAG 540
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 299 TAGTTGATGTAAGAAACCATCCAATTCTCATACATTGCAAACGCGGAAAGCATAGGACAG 358
Query 541 GTTGTCTAGTGGGATGCTTAAGAAAAGTTCAGAGCTGGTGTTTATCATCGGTGCTCGAGG 600
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 359 GTTGTCTAGTGGGATGCTTAAGAAAGGTTCAGAGCTGGTGCTTATCATCGGTGCTCGAGG 418
Query 601 AGTACCAGAAGAACGCGGGTTTAAAATGGAGACAAAGGGACTTGAATTTTATAGAGGCAT 660
| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||
Sbjct 419 AATACCAGAAGAACGCGGGTTTAAAGTGGAGACAAAGGGACTTGAAGTTTATAGAGACAT 478
Query 661 TTGATATAGTGAGCTTGAGACAGTGTCTCTTGAGCATCATGTATCAGTATCACGGTTATG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TTGATATAGTGAGCTTGAGACAGTGTCTCTTGAGCATCATGTATCAGTATCACGGTTATG 538
Query 721 GCTTCAAGAGGAGAAGGTTGGCATATGAAGAAGAGAATGTCAAGACACCAAAACCGCAGG 780
|||||||||||||||||||||| |||||||| || |||||| ||||||||||||||| ||
Sbjct 539 GCTTCAAGAGGAGAAGGTTGGCGTATGAAGACGAAAATGTCCAGACACCAAAACCGCTGG 598
Query 781 CTGCTAGAGTTTAA 794
|||||| |||||||
Sbjct 599 CTGCTAAAGTTTAA 612
> Ahg488502 jgi|Araly1|488502|fgenesh2_kg.6__1636__AT5G16480.1
Length=1014
Score = 483 bits (261), Expect = 1e-135
Identities = 471/570 (83%), Gaps = 24/570 (4%)
Strand=Plus/Plus
Query 203 GGATGATCA-CAACGGTGATGTTTT-AGCGCCGCCGTCGAATTTCTCGATGGTTGAAGAT 260
||||||| | | |||| || ||||| | | |||||| ||||||| |||||||| |||||
Sbjct 253 GGATGAT-AGCGACGGAGAAGTTTTGATC-CCGCCGCCGAATTTTTCGATGGTAGAAGAC 310
Query 261 GGAATTTATCGATCTGGGTTTCCTCGACCT-GAGAATTTCAGTTTCCTTA-AAACCCTAA 318
|| |||||||||||||||||||||| | || ||||||||| | || |||| ||||||||
Sbjct 311 GGGATTTATCGATCTGGGTTTCCTC-AGCTGGAGAATTTCGGATT-CTTATCAACCCTAA 368
Query 319 ATCTTCGTTCCATCATTTATCTGTGTCCTGAACCATACCCAGAGGAGAATCTCAAGTTTC 378
||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||| ||
Sbjct 369 ATCTTCGATCCATCATTTATCTGTGTCCTGAACCATACCCTGAGGACAATCTCAAGTCTC 428
Query 379 TTGAGGCTAACAACATTAAGCTTTACCAATTTGGAATCGAAGGCAAAACGGATCCTCCAA 438
|| | | |||||||||||||||| || || || || ||||||||||||||||||||||
Sbjct 429 TTCAATCCAACAACATTAAGCTTTTTCAGTTCGGGATTGAAGGCAAAACGGATCCTCCAA 488
Query 439 CTCCTATGCCAAAAGATACAGTTTTG-GATGCTCTCAAAGTTTTAGTTGATGTGAGAAAC 497
||||||||||||| |||||||| ||| | |||||| | ||| |||||||||| ||||
Sbjct 489 CTCCTATGCCAAAGGATACAGTGTTGAG-TGCTCTTAGAGTACTAGTTGATGTTCGAAAT 547
Query 498 CATCCAATTCTCATACATTGCAAACGCGGGAAGCATAGGACAGGTTGTCTAGTGGGATGC 557
|||||||||||||| || || || |||||||||||||||||||||||||| |||||||||
Sbjct 548 CATCCAATTCTCATCCACTGTAAGCGCGGGAAGCATAGGACAGGTTGTCTTGTGGGATGC 607
Query 558 TTAAGAAAAGTTCAGAGCTGGTGTTTATCATCGGTGCTCGAGGAGTACCAGAAGAACGCG 617
|| || ||||| || | ||||||||| |||||||| || ||||| || || ||| |||
Sbjct 608 TTGAGGAAAGTGCAAAACTGGTGTTTGTCATCGGTTCTTGAGGAATATCAAAAGTGTGCG 667
Query 618 GGTTTAAAATGGAGACAAAGGGACTTGAATTTT-ATAGAGGCATTT-GATATAG-TGAGC 674
||||| |||||||||||||| || || || || ||||||| |||| ||| | | | ||
Sbjct 668 GGTTTGAAATGGAGACAAAGAGATTT-AAGGTTCATAGAGG-ATTTTGATGT-GCTCAGA 724
Query 675 TTGA-GACAGTGTCTCTTGAGCATCATGTATCAGTATCAC-GGTTATGG-CTTCAAGAGG 731
|||| | || ||||| | ||||| || |||||||| || || ||||| || ||||||
Sbjct 725 TTGAAG-CAATGTCTATACAGCATTATCTATCAGTA-CAATGGGTATGGTCT-CAAGAGA 781
Query 732 AGAAGGTTGGCA-TATGAAGAAGAGAATGT 760
|||| |||| | ||| |||||||||||||
Sbjct 782 AGAAAGTTG-CTGTATCAAGAAGAGAATGT 810
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35683050312
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5