BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02810.1
Length=2146
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477523 jgi|Araly1|477523|fgenesh2_kg.3__224__AT3G02810.1 2543 0.0
> Ahg477523 jgi|Araly1|477523|fgenesh2_kg.3__224__AT3G02810.1
Length=2032
Score = 2543 bits (1377), Expect = 0.0
Identities = 1637/1759 (93%), Gaps = 32/1759 (2%)
Strand=Plus/Plus
Query 194 CATCATCATGCACTGTTTTCCGTGTTTCTCTTCGCCAAAGAACAAGAAATCTTCAACTAC 253
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 117 CATCATCATGCACTGTTTTCCGTGTTTCTCCTCGCCAAAGAACAAGAAATCTTCAACTAC 176
Query 254 GAATGAGACCAACGACAACAACGAACCCAAACCAGATGATAGGAGACGTGCAGAAGAAAC 313
|||||| || ||||||||||||||||||| |||| ||||||||||||| ||||||||||
Sbjct 177 GAATGAAACTAACGACAACAACGAACCCAGACCACCTGATAGGAGACGTACAGAAGAAAC 236
Query 314 AGAGGAAATAGAGCAATCGGAAGGAACATCGTTGAAGATATTCACTTTCCGGGAATTAGC 373
|||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 237 AGAGGAAACAGAGCAATCAGAAGGAACATCGTTAAAGATATTCACTTTCCGGGAATTAGC 296
Query 374 TACAGCCACAAAGAATTTCCGGCAAGAGTGTTTGCTAGGAGAAGGTGGATTTGGTAGGGT 433
|| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||
Sbjct 297 AACGGCCACAAAGAATTTCAGGCAAGAATGTTTGCTAGGAGAAGGTGGATTTGGTAGAGT 356
Query 434 TTACAAAGGAACCCTCAAATCTACTGGCCAGGTGGTGGCTGTAAAGCAACTAGACAAGCA 493
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TTACAAAGGAACCCTTAAATCTACTGGCCAGGTGGTGGCTGTAAAGCAACTAGACAAGCA 416
Query 494 TGGATTACATGGAAACAAAGAGTTTCAAGCTGAGGTTTTGTCTTTAGGCCAACTTGATCA 553
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 417 TGGATTACATGGGAACAAAGAGTTTCAAGCTGAGGTTTTGTCTTTAGGCCAACTCGATCA 476
Query 554 TCCGAATCTTGTTAAGCTTATTGGTTACTGCGCGGATGGAGATCAAAGGCTTTTGGTCTA 613
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 477 TCCGAATCTTGTTAAGCTTATTGGGTACTGCGCAGATGGAGATCAAAGGCTTTTGGTCTA 536
Query 614 TGATTATATCTCTGGAGGTTCACTTCAAGACCATCTTCATGAACCAAAAGCAGACAGTGA 673
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||
Sbjct 537 TGATTATATCTCTGGAGGTTCACTTCAAGACCATCTTCACGAACCAAAACCAGACTGTGA 596
Query 674 TCCGATGGATTGGACAACTAGGATGCAGATAGCGTAT-GCTGCAGCGCAAGGGCTTGATT 732
||||||||||||||||| |||||||||||||||||| || ||||||||||| ||| |||
Sbjct 597 ACCGATGGATTGGACAACGAGGATGCAGATAGCGTATGGC-GCAGCGCAAGGACTTTATT 655
Query 733 ACTTGCACGATAAAGCGAATCCACCCGTGATATACAGAGATTTGAAAGCTTCAAACATTT 792
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 656 ACTTGCACGATAAAGCGAATCCACCTGTGATATACAGAGATTTAAAAGCTTCAAACATTT 715
Query 793 TGTTAGATGATGACTTTTCTCCTAAGCTTTCTGATTTTGGTCTACATAAGCTAGGACCCG 852
|||||||| ||||||||||||| ||||||||||| |||||||| |||||||||||||| |
Sbjct 716 TGTTAGATTATGACTTTTCTCCAAAGCTTTCTGACTTTGGTCTGCATAAGCTAGGACCAG 775
Query 853 GGACAGGTGATAAGATGATGGCTTTATCTTCACGAGTAATGGGAACTTATGGTTACTCTG 912
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 776 GAACAGGTGATAAGATGATGGCTCTATCTTCACGAGTAATGGGAACTTATGGTTACTCTG 835
Query 913 CACCTGAGTATACACGAGGCGGAAATCTCACTTTGAAATCAGATGTCTATAGCTTTGGTG 972
| ||||||||||| ||||| ||||||||||| ||||| ||||||||||| ||||||||||
Sbjct 836 CTCCTGAGTATACGCGAGGAGGAAATCTCACGTTGAAGTCAGATGTCTACAGCTTTGGTG 895
Query 973 TTGTGTTGCTTGAGCTTATCACGGGTCGAAGAGCTCTTGATACTACTAGGCCTAATGATG 1032
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TTGTGTTGCTTGAGCTCATCACGGGTCGAAGAGCTCTTGATACTACTAGGCCTAATGATG 955
Query 1033 AACAGAACTTAGTTTCTTGGGCACAACCGATATTTAGAGATCCGAAGAGGTATCCCGATA 1092
||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||
Sbjct 956 AACAGAACTTAGTTTCTTGGGCACAACCGATATTTAGAGATCCTAAGAAGTATCCGGATA 1015
Query 1093 TGGCAGATCCAGTTTTGGAGAATAAATTCTCAGAGAGAGGATTAAACCAAGCAGTGGCAA 1152
|||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TGGCAGATCCAGTTCTGAATAATAAATTCTCAGAGAGAGGATTAAACCAAGCAGTGGCAA 1075
Query 1153 TAGCTTCAATGTGTGTGCAAGAGGAAGCATCAGCTCGTCCTCTTATAAGCGATGTAATGG 1212
|||| |||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||
Sbjct 1076 TAGCGTCAATGTGTGTGCAAGAGGAGGCAGCAGCTCGTCCTCTGATAAGCGATGTAATGG 1135
Query 1213 TTGCGCTTAGCTTCCTTTCGATGCCTACAGAAGATGGTATTCCCACAACAGTTCCTATCT 1272
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1136 TTGCGCTTAGCTTCCTTTCGATGCCTACAGAAGACGGTATTCCCACAGCAGTTCCTATCC 1195
Query 1273 TATCCTTCAAAGACAAGAGCATGTCTATAGCCTTAAGCCGACATGATTCAAATCTTGTAT 1332
|||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1196 TATCTTTCAAGGACAAGAGCATGTCTATAGCCTTAAGCCGGCATGATTCAAATCTTGTAT 1255
Query 1333 CTCCTCCTCCTGAGCTAGCTACGGAAGATGACAAATCTAGTACCTCATCAGGCGAAGAAT 1392
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1256 CTCCTCCTCCTGAGCTAGCTACGGAAGATGACAAATCTAGTACATCATCAGGCGAAGAAT 1315
Query 1393 CATCTTTGGAGAGCGAAAAGGAGAGTGTGAGTAAGAATGA-GTATAAGAAGAAACATGAA 1451
|||||||||| || ||||| |||| |||||||||||| || ||||||||| | ||||||
Sbjct 1316 CATCTTTGGACAGTGAAAATGAGAATGTGAGTAAGAA-GAAGTATAAGAA-A--CATGAA 1371
Query 1452 GAGGAAGATAGCTCAATGGAATCTGATGATGAGTCTGATTCTAACTCTGAACATGAAAAG 1511
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1372 GAGGAAGATAGCTCAATGGAATCTGATGATGGGTCTGATTCAAACTCTGAACATGAAAAA 1431
Query 1512 GACCAA------CCACCA--AA-GCCTATTGATGAGAAGAACCAGGCGCAAAGCTTGAAG 1562
|||||| |||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1432 GACCAAGATAGTCCACCACCAAAGCCTATTGATGAGAAGAACCAGGCGCAAAGCTTGAAG 1491
Query 1563 ATAAAGTATAGATATAGCTGGGAAGATATTGATGTCAATGATGAGAGGCTAAGCAGTAAA 1622
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 1492 ATAAAGTATAGATATAGCTGGGAAGATATAGATGTCGGTGATGAGAGGCTAAGCAGTAAA 1551
Query 1623 AGCAGCCAAAAATCAAACGACGAAAGTACTTCTTCGCGTTATGATAGCGACagagatcaa 1682
|||||||| |||||| | |||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 1552 AGCAGCCAGAAATCAGATGACGAAAGCACTTCTTCGCGCTATGATAGCGACAGAGACCAG 1611
Query 1683 gacgagaaagggaaagaagaagaggaagaggaagaggcagaagaaaagCATACTCATATT 1742
|| ||||||| ||||||||| | | | | | |||||| | | || |||||||||||||
Sbjct 1612 GAGGAGAAAGAGAAAGAAGA-G-G-A-G-G-AAGAGG-A-A-GA---GCATACTCATATT 1659
Query 1743 GAACACATTGATAGCTCAAAAACTGATGATGATCAAAGTGTTTACTTTGATAATGATGAT 1802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1660 GAACACATTGATAGCTCAAAAACTGATGATGATCAAAGTGTTTACTTTGATAATGATGAT 1719
Query 1803 GATTCAGGAGATGACAATGGAGGCTCTTTGCATCGGATAAAATCAGATGTTGCGATCGAT 1862
|||||||||||||||||||||| |||||||||||||||||||||||| |||| ||| |||
Sbjct 1720 GATTCAGGAGATGACAATGGAGCCTCTTTGCATCGGATAAAATCAGAGGTTGAGATTGAT 1779
Query 1863 TCTATTAAAGAGTGACATTTTTCAAGATTTTTTATCAATCCGTTGAAGCTCACAAGAAGT 1922
|||||||||||||||| |||||||||||||| ||| |||| |||||||||||| |||
Sbjct 1780 TCTATTAAAGAGTGAC-TTTTTCAAGATTTTA-ATCCATCCACTGAAGCTCACAAAAAG- 1836
Query 1923 A-TTTGAAACTTTTTTGGG 1940
| |||||| | ||||||||
Sbjct 1837 AGTTTGAATCATTTTTGGG 1855
Score = 246 bits (133), Expect = 4e-64
Identities = 165/180 (92%), Gaps = 4/180 (2%)
Strand=Plus/Plus
Query 1967 GGGTATTAAAATAAGATACATATTGACGGTTTTTCTTAACAAATTATAACCATCTCTCTT 2026
|||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1854 GGGTATTACTATAAGATACATATTGATGTTTTTTCTTAACAAATTATAACCATCTCTCTT 1913
Query 2027 TATA-CATGATGAAGATGTTTTGGATTGATAGATTAAT-AAAGAAACAAGTTGTATAA-T 2083
||| ||||||||||||||||||||||| ||||| ||| ||||||||||| ||||||| |
Sbjct 1914 TATGGCATGATGAAGATGTTTTGGATTGGTAGAT-AATTAAAGAAACAAGCTGTATAAAT 1972
Query 2084 CAGATAATCTGATTGAGAAAACTTATCTCAGCTTTTGTAATCCTTTaaaaaaaaaTGTTA 2143
||||| ||||||||||||||||| ||||||| |||||||||||||| |||||||||||||
Sbjct 1973 CAGATGATCTGATTGAGAAAACTCATCTCAGGTTTTGTAATCCTTTGAAAAAAAATGTTA 2032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80751319400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5