BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02820.1
Length=1052
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927772 jgi|Araly1|927772|scaffold_300229.1 1349 0.0
> Ahg927772 jgi|Araly1|927772|scaffold_300229.1
Length=904
Score = 1349 bits (730), Expect = 0.0
Identities = 849/904 (94%), Gaps = 17/904 (2%)
Strand=Plus/Plus
Query 30 ATCGAAGAGTGAAATCTGAAATGGAATCAGCTCCGACGGGATGCTTCAAGTGTGGTCGTC 89
||| ||| ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 1 ATCCAAGGGTGAAATCTGAAATGGAATCAGCTCCGACGGGATGTTTCAAATGTGGCCGTC 60
Query 90 CCGGTCATTGGTCTCGTGATTGTCCATCATCGGCTCCGGTCGCCGGCAATAATTCCGTTT 149
||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 CCGGTCACTGGTCTCGCGATTGTCCATCGTCGGCTCCGGTCGCCGGCAATAATTCCGTTT 120
Query 150 CTTCTTCTTCCGCTCCATCTCAAATCCCTAATAATGAATTTCAGAGATCCTCCAGTAAAA 209
| |||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 121 CGTCTTCTTCCGGTCCATCTCAAACCCCTAATAATGAATTTCAGAGATCCTCCAATAAAA 180
Query 210 GTGGAA--CCT-----C---A-----ATAGCTCCTGCTCCTAAAGTGACGAAGACGAGAG 254
|||||| ||| | | |||||||||| |||||||||||||||||||||||
Sbjct 181 GTGGAATTCCTGCCGCCGGAACCTCCATAGCTCCTGTTCCTAAAGTGACGAAGACGAGAG 240
Query 255 TTCAAAGGCCCAAGCTAACTCCTGAATTGTTACTCTCTGAGGATGGTCTCGGCTATGTTC 314
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 TCCAAAGGCCCAAGCTAACTCCTGAATTGTTACTCTCTGAGGATGGTCTCGGTTATGTTC 300
Query 315 TTCGCTATTTCCCTAAATCCTTCAAGTATCGTGGCCGAGGCAAAGAGGTGAGCGATTTGG 374
|||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 301 TTCGTTATTTCCCTAAATCCTTCAAGTATCGTGGCCGAGGCAAGGAGGTTAGCGATTTGG 360
Query 375 GGAATTTGATACGGTTGTACAGTGAGTGGCACACTCATTTGCTACCTTACTATTCCTTTG 434
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 GGAATTTGATACGGCTGTACAGTGAGTGGCACTCTCATTTGCTACCTTACTATTCCTTTG 420
Query 435 ATCACTTTGTGCATAAAGTTCAACAAGTCGCTTCTACTAAGCGTGTTAAGAATTGTATAA 494
||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||
Sbjct 421 ATCACTTTGTGCATAAAGTGCAACAAGTCGCTTCTACTAAACGTGTGAAGAACTGTATAA 480
Query 495 ATGAACTGCGAGAAAGGGTTGCCAGTGGAGTTGATCCAAACAAGTTATACGAAAAG-CAG 553
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 481 ACGAACTGCGAGAAAGGGTTGCCAGCGGAGTTGATCCAAACAAGTTATACGAAAAGCCA- 539
Query 554 GAAGAAAATACTGTTCCTTCTGATGATCAAGATATGGATCAGCCAAGTCATGACGAAGAG 613
||||||||||||| ||||| ||||||||||||||||||||||||| ||||||| ||||||
Sbjct 540 GAAGAAAATACTGGTCCTTATGATGATCAAGATATGGATCAGCCAGGTCATGAAGAAGAG 599
Query 614 AACATACCATCAAAGAGCGTTGATGCTGATACAAATGCTGATGCTTTTGAAGACAGTATG 673
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AACATACCATCAAAGAGCGCTGATGCTGATACAAATGCTGATGCTTTTGAAGACAGTATG 659
Query 674 TTGAATGAGATATTTGATAATGCTTCAAAGTTACCGAGCGATGAACAAAACATGGATAAA 733
||||||||||| ||||||||||||||| || |||||||||||||||||||||||| ||||
Sbjct 660 TTGAATGAGATCTTTGATAATGCTTCACAGCTACCGAGCGATGAACAAAACATGGCTAAA 719
Query 734 AGCAGTGAACTGACAGAAGAGCAAAGAGCACGTATGGAAGCTAATAGATTGAAGGCAATG 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGCAGTGAACTGACAGAAGAGCAAAGAGCACGTATGGAAGCTAATAGATTGAAGGCAATG 779
Query 794 GAGAAAGCTCAGAACATTTCCGAGGAACAGAGAGTACGTATGGAAGCTAATAGGCTAAAA 853
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 780 GAGAAAGCTCAGAACATTTCCGAGGAACAAAGAGTACGTATGGAAGCTAATAGGCTAAAG 839
Query 854 GCTCTCGAAAGAGCCAAAGCAAGGCTCCAACCAAATCAAGATTAGACTAGAGATGTTCAA 913
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GCTCTTGAAAGAGCCAAAGCAAGGCTCCAACCAAATCAAGATTAGACTAGAGATGTTCAA 899
Query 914 TTTG 917
||||
Sbjct 900 TTTG 903
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39152235759
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5