BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02830.1
Length=1695
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477525 jgi|Araly1|477525|fgenesh2_kg.3__226__AT3G02830.1 2357 0.0
Ahg488510 jgi|Araly1|488510|fgenesh2_kg.6__1644__AT5G16540.1 318 7e-86
> Ahg477525 jgi|Araly1|477525|fgenesh2_kg.3__226__AT3G02830.1
Length=1649
Score = 2357 bits (1276), Expect = 0.0
Identities = 1426/1494 (95%), Gaps = 27/1494 (2%)
Strand=Plus/Plus
Query 1 TGGAGGTGAGACGAGAACGcttttttgc-ttttcgtc-tt-tctctctctct-t-tcttt 55
|||||||||||||||||||||||||||| |||||||| || ||||||||||| | |||||
Sbjct 1 TGGAGGTGAGACGAGAACGCTTTTTTGCTTTTTCGTCTTTCTCTCTCTCTCTCTCTCTTT 60
Query 56 cttcacta-cctctcacctctctgtttacacgattcttcttcttcttcttcttcttcttt 114
|||||||| |||||||||||||||||||||||| |||||| ||
Sbjct 61 CTTCACTACCCTCTCACCTCTCTGTTTACACGA------------------TTCTTC-TT 101
Query 115 agatgtcttcttcCTCCATTGTCATCTACCTCTCTACACTTCATTTTCTTGTTGGAAGAA 174
||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| |||
Sbjct 102 AGATGTCTTCTTCCTCCATTGTCATTTACCTATCTACACTTCATTTTCTTGTCGGAGGAA 161
Query 175 GATCGATTACCGGTGACTCATTCTTAGTGATGACAGTATAATGTCTGATGCTTATTatca 234
||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 162 GATCGATTATCGGTGATTCATTCTTAGTGATGACAGTATAATGTCTGATGCTTATCATCA 221
Query 235 tcatcatcatcatcGGAGACATTCTTCCTCTTCACGTCTATGGATTTTAATGCCGGAGTT 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 TCATCATCATCATCGGAGACATTCTTCCTCTTCACGTCTATGGATTTTAATGCCGGAGTT 281
Query 295 CCCATGTCTTCTCTTTCACCTTTGATGAATCAAGATGCAATGTGGCAAATGAATTTGAGT 354
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 282 CCCATGTCTTCTCTTTCACCTTTAATGAATCAAGATGCAATGTGGCAAATGAATTTGAGT 341
Query 355 TCAGATGAAACAATGGAAACTGGTTCTTACCCTGAACGACCAGGAGAGCCTGATTGTTCT 414
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 342 TCAGATGAAACAATGGAAACTGGTTCCTACCCTGAACGACCAGGAGAGCCTGATTGTTCT 401
Query 415 TATTACATAAGAACTGGTCTTTGTAGATTTGGCTCTACTTGTCGGTTCAACCATCCTCGT 474
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 402 TATTACATAAGAACTGGACTTTGTAGATTTGGCTCTACTTGTCGGTTCAATCATCCTCGT 461
Query 475 GATCGGGAACTGGTTATAGCTACTGCAAGGATGAGAGGAGAATACCCTGAAAGGATTGGT 534
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 462 GATCGGGAACTGGTTATAGCCACTGCAAGGATGAGAGGAGAGTACCCTGAAAGGATTGGT 521
Query 535 CAGCCTGAATGCGAGTACTATTTGAAGACAGGAACCTGCAAGTTTGGAGTAACATGTAAG 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 CAGCCTGAATGCGAGTACTATTTGAAGACAGGAACCTGCAAGTTTGGAGTAACATGTAAG 581
Query 595 TTTCATCATCCAAGGAACAAAGCTGGGATTGCTGGAAGAGTCTCTCTCAATATGTTAGGC 654
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 582 TTTCATCATCCTAGGAACAAAGCTGGTATTGCTGGAAGAGTCTCTCTCAATATGTTAGGC 641
Query 655 TATCCTCTACGCTCGAATGAGGTTGATTGTGCTTATTTCCTAAGAACCGGACACTGTAAA 714
|||||||| ||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 642 TATCCTCTCCGCTCGAATGAAGTTGATTGTGCTTATTTTCTAAGAACCGGACATTGTAAA 701
Query 715 TTTGGTGGTACTTGTAAATTCAACCACCCTCAGCCTCAACCAACCAACATGATGGTTCCT 774
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 TTTGGTGGTACTTGTAAATTCAACCACCCTCAGCCTCAACCAACCAACATGATGGTTCCA 761
Query 775 ACCTCAGGGCAACAGTCTTATCCTTGGTCAAGAGCTTCTTTTATTGCCAGCCCTCGTTGG 834
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 ACTTCAGGCCAACAGTCTTATCCTTGGTCAAGAGCTTCTTTTATTGCCAGCCCTCGTTGG 821
Query 835 CAAGATCCGTCTAGCTACGCTTCCTTAATCATGCCTCAAGGAGTTGTCCCGGTTCAAGGA 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 CAAGATCCGTCTAGCTACGCTTCCTTAATCATGCCTCAAGGAGTTGTCCCGGTTCAAGGA 881
Query 895 TGGAACCCTTACAGTGGTCAGCTCGGCTCAGTTTCTCCTTCAGGTACCGGAAATGATCAA 954
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 TGGAACCCTTACAGTGGTCAGCTCGGCTCAGTTTCTCCTTCAGGTACCGGAAATGATCAC 941
Query 955 AACTACAGAAATTTACAGCAGAACGAGACAATAGAGTCAGGCTCTCAGTCTCAAGGATCA 1014
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 942 AACTACAGAAACATACAGCAGAACGAGACAATAGAGTCAGGCTCTCAGTCTCAAGGGTCA 1001
Query 1015 TTCTCGGGTTACAATCCGGGATCCTCTGTTCCGCTAGGAGGGTATTATGCATTGCCGAGG 1074
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1002 TTCTCGGGTTTCAATCCGGGATCCTCTGTTCCGATAGGAGGGTATTATGCATTGCCGAGG 1061
Query 1075 GAAAATGTGTTCCCGGAGAGACCAGGACAACCCGAATGCCAATTCTACATGAAGACAGGT 1134
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1062 GAAAATGTGTTCCCGGAAAGACCAGGACAACCCGAATGCCAATTCTACATGAAGACAGGT 1121
Query 1135 GACTGCAAATTTGGCACAGTTTGCAAATTTCACCATCCTAGAGACAGACAAGCTCCTCCT 1194
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1122 GACTGCAAATTTGGCACAGTTTGCAAGTTTCACCATCCTAGAGACAGACAAGCTCCTCCT 1181
Query 1195 CCTGATTGTCTCTTAAGCTCCATTGGCCTCCCCTTACGCCCGGGAGAACCGTTGTGTGTG 1254
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1182 CCTGATTGTCTCTTAAGCTCCATTGGCCTCCCTTTACGCCCGGGAGAACCGTTGTGTGTG 1241
Query 1255 TTCTATACACGCTATGGAATCTGCAAATTTGGTCCAAGCTGTAAATTTGATCACCCAATG 1314
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 TTCTATACTCGATATGGAATCTGCAAATTTGGTCCAAGCTGTAAATTTGATCACCCAATG 1301
Query 1315 CGAGTATTCACATACGACAACACAGCTTCAGAGACAGATGAGGTAGTGGAAACATCAACA 1374
|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 AGAGTATTCGCATACGAGAACACAGCTTCAGAGACAGATGAGGTAGTGGAAACATCAACA 1361
Query 1375 GGGAAATCTAGAAGACTCTCTGTGTCTGAAACAAGACAAGCAGCAACAACATCCTCTGGT 1434
||| |||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1362 GGGCAATCCAGAAGACACTCTGTATCTGAAACAAGACAAGCAGCAACAACATCCTCTGGT 1421
Query 1435 AAAGACACTACCATTGATAATACACAGCAGTgaagaaacaaaggaagaagaaga 1488
||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1422 AAAGATACTACCATTGATAATACACAGCAGTGAAGAAACAAA--AAGAAGAAGA 1473
Score = 305 bits (165), Expect = 6e-82
Identities = 171/174 (98%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 1522 tttgatttttcaaaagaGGAATCTGTAAATTCTCATTTTCATTTAGTCTCTCAAGCATTT 1581
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1476 TTTGATTTTTCAAAAGAGGAATCTGTAAATTGTCATTTTCATTTAGTCTCTCAAGCATTT 1535
Query 1582 ATTAATAATGTATAGAGGTGATTTATACAACTGATCTTGATCTTGATCTGATCGCCATTG 1641
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1536 ATTAATAATGTATAGAGGTGATTTATACAACTGATCTTGATCTTGATCTGATGGCCATTG 1595
Query 1642 TTGTAATATTCTTTTGGCGAATCAGGTTCAATAAAATTGAAAGTAATTTCCCTC 1695
|||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1596 TTGTAATATTCTTTTGGCGAATCAGGTTGAATAAAATTGAAAGTAATTTCCCTC 1649
> Ahg488510 jgi|Araly1|488510|fgenesh2_kg.6__1644__AT5G16540.1
Length=1490
Score = 318 bits (172), Expect = 7e-86
Identities = 271/319 (85%), Gaps = 6/319 (2%)
Strand=Plus/Plus
Query 1019 CGGGTTACAATCCGGGATCCTCTGTTCCGCTAGGAGGGTAT-TATGCATTGCCGAGGGAA 1077
|||||| | || | ||| |||||||||||| |||| | |||||||| || || ||
Sbjct 897 CGGGTTTC-ATTCAGGAAACTCTGTTCCGCT---CGGGT-TCTATGCATTACCTAGAGAG 951
Query 1078 AATGTGTTCCCGGAGAGACCAGGACAACCCGAATGCCAATTCTACATGAAGACAGGTGAC 1137
||||| ||||| || |||||||| ||||| ||||| |||||||||||||||||||| ||
Sbjct 952 AATGTATTCCCAGAAAGACCAGGCCAACCTGAATGTCAATTCTACATGAAGACAGGAGAT 1011
Query 1138 TGCAAATTTGGCACAGTTTGCAAATTTCACCATCCTAGAGACAGACAAGCTCCTCCTCCT 1197
||||||||||| ||||| ||||||||||| ||||| |||||||||||| | ||| |||||
Sbjct 1012 TGCAAATTTGGAACAGTCTGCAAATTTCATCATCCAAGAGACAGACAAACCCCTGCTCCT 1071
Query 1198 GATTGTCTCTTAAGCTCCATTGGCCTCCCCTTACGCCCGGGAGAACCGTTGTGTGTGTTC 1257
|||||| |||||||||| |||||||||| ||||||| ||||||||| |||| ||||||
Sbjct 1072 GATTGTGTCTTAAGCTCTGTTGGCCTCCCTTTACGCCAGGGAGAACCACTGTGCGTGTTC 1131
Query 1258 TATACACGCTATGGAATCTGCAAATTTGGTCCAAGCTGTAAATTTGATCACCCAATGCGA 1317
||| | || ||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1132 TATTCGCGGTATGGGATCTGCAAGTTTGGTCCAAGCTGTAAATTTGATCACCCGATGCGA 1191
Query 1318 GTATTCACATACGACAACA 1336
|| ||||| ||| ||||||
Sbjct 1192 GTCTTCACTTACAACAACA 1210
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63572618905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5