BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02840.1
Length=1278
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477526 jgi|Araly1|477526|fgenesh2_kg.3__227__AT3G02840.1 1890 0.0
> Ahg477526 jgi|Araly1|477526|fgenesh2_kg.3__227__AT3G02840.1
Length=1269
Score = 1890 bits (1023), Expect = 0.0
Identities = 1201/1284 (94%), Gaps = 23/1284 (2%)
Strand=Plus/Plus
Query 1 ATCGAATAGTCGAAAAATATTTGAACTTTCTTAGGaaaccaaaccaacaaaacaaaaagg 60
|||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1 ATCGAATAATCGAAAAATATTTGAATTTTCTTAGGAAACCAAACCAA-AAAACAAAAAGG 59
Query 61 aaaacGAGATAATGGTGTTACCTTGGAGATCAAGAGGAGGAGTAGCAAAGAGACGTAATC 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 60 AAAACGAAATAATGGTGTTACCTTGGAGATCAAGAGGAGGAGTAGCAAAGAGACGCAATC 119
Query 121 AATTGATTTCCGGCGATATCTCCGTCGTGGAAACCAAGATTCCAGTTCAACTCCGATCGC 180
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 120 AATTGATTGCCGGCGATATCTCCGTCGTGGAAACCAAGATTCCGGTTCAACTCCGAT--- 176
Query 181 CATCAAGGATAGAGCGGATTCAGTCACCGCGCGTGCTGTTGACGCCGCGTGATGCGGTGG 240
|||||||||| |||||||||||||||||||| ||||||||| ||||| |||||| || |
Sbjct 177 CATCAAGGATGGAGCGGATTCAGTCACCGCGGGTGCTGTTGGCGCCGTATGATGCCGTTG 236
Query 241 AGATAAGTCGGAGATTGCAAAACGCAGCGGCGCGTGAGGAGTATGCCGAGTGTTTGGAGA 300
||||||||||||||||| |||| || |||||||||||||| |||||||||||||| ||||
Sbjct 237 AGATAAGTCGGAGATTGGAAAATGCGGCGGCGCGTGAGGAATATGCCGAGTGTTTCGAGA 296
Query 301 TTGTGAGCAAAATCAAGAACTTGGG-A-AG-AGGAGGGGACACGAACAAGAAGTGTTTGG 357
|||||| |||||||||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 297 TTGTGACCAAAATCAAGAACTTGGGAAGAGAAGGAGGGGACACGAACAAGAAGTGTTTGG 356
Query 358 TCCAAAACGGAAGCGTTTTGGCTTTGTCTTCTTGTTTTGAAAGATTCGCGGCGGCGCGTG 417
|||||||||| | ||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 357 TCCAAAACGGCGGAGTTTTAGCTTTGTCTTCTTGTTTCGAAAGATTCGCGGCGGCGCGTG 416
Query 418 ATGGACAC-ATGCGT-TTATTGGAGGAAATCTTGTTTGTTCTATCATCTTGGTTGCCTCT 475
| |||||| | |||| || |||||||||||||||||||||||||| || |||||||||||
Sbjct 417 AGGGACACGA-GCGTCTT-TTGGAGGAAATCTTGTTTGTTCTATCTTCATGGTTGCCTCT 474
Query 476 GAATCGATCAGAAGGTTTCAACAAGATGGGATCAACGGCTTCTCTTAACTGTCTCGTACG 535
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 475 GAATCGATCAGAAGGTTTCAACAAGATGGGATCAACAGCTTCGCTTAACTGTCTCGTACG 534
Query 536 GTTCTTGAACGGTAAGGACGCTAAAACGAGACAAAACGCTGCGTTTTGCATCAGAGAGGT 595
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 535 GTTCTTGAACGGTAAGGACGCTAAAACGAGACAAAACGCTGCTTTTTGTATCAGAGAGGT 594
Query 596 TATTGCAGTAGACAAGAGGTATGTGTACGCGTTAACAGATGTGGAAGGAGCTTGTGAAGG 655
||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||
Sbjct 595 TATTGCAGTAGACAAGAGGTACGTGTATGCGTTAACAGATATGGAAGGAGCTTGTGAAGG 654
Query 656 ATTAGTTAAGATCATCAGAGACTCTGTTTCGACTAGCTCCACGAAAGCATCTTTAATGGT 715
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 655 ATTAGTTAAGATCATCAGAGACTCTGTTTCGACTAGCTCGGCGAAAGCATCGCTAATGGT 714
Query 716 GATTTATAGAGCGATTTCTTCTAACGACAAGATCACTGAAAAATTTGTGAAACTGGGTTT 775
|||||||||||||||||||| ||||||| ||||| ||| || |||||||| |||||||||
Sbjct 715 GATTTATAGAGCGATTTCTTGTAACGACCAGATCGCTGCAAGATTTGTGAGACTGGGTTT 774
Query 776 GGTTG-AGTTGATCACAGAGATGATGGTGAACAATGCCGAAAAGAGCGTTTGCGAGAGAT 834
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GGTTGAAG-TGATCACAGAGATGATGGTGAACAATGCCGAAAAGAGCGTTTGCGAGAGAT 833
Query 835 CTCTAGTTGTT-TTAAACGCTACATGCGATAACGAGCAAGGCAAAGAAGATGTTCTTAGA 893
||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 834 CTCTAGTTGTTCTTAA-CGCTATATGCGATAACGAGCAAGGCAAAGAAGATGTTCTTAGA 892
Query 894 AACGCTTTGATCGTTCCTCTTCTGGTGAAGAAGATTCTTAGAGTTTCGGATCTCGCGACA 953
||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||
Sbjct 893 AACGCTTTGATCGTTCCTCTTCTAGTTAAGAAGGTTCTTAGAGTTTCGGATCTCGCGACA 952
Query 954 CAATGTTCGGTTTCGATACTTTGGAAGCTATGGAAGAATAA-GAAAGACGGAGAATGTGA 1012
||||||||||| ||||| ||||||||||||||||||||||| | || | ||| |||
Sbjct 953 CAATGTTCGGTCTCGATTCTTTGGAAGCTATGGAAGAATAATG---GA---A-AATCTGA 1005
Query 1013 TGATCGTTTGTTAGTTGAAGCTCTTCAAGTTGGTGCCTTTGAGAAACTCTTAGTGCTCTT 1072
|||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1006 TGATTGTTTGCTAGTTGAAGCTCTTCAAGTTGGTGCCTTTGAGAAACTTTTAGTGCTCTT 1065
Query 1073 ACAAGTCGGGTGCGAGGATAAGACGAAGGAGAAAGCGAGCGAGCTCTTGCGGAATTTAAA 1132
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1066 ACAAGTCGGGTGCGAGGATAAGACGAAGGAGAAAGCGAGCGAGCTCTTACGGAATTTAAA 1125
Query 1133 CCGTTGTAGAAACGAGATCGAGAAGACAAATTGTGTCGATTCTTCAATGCATTTGAAGAA 1192
||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1126 CCGTTGTAGAAACGACATCGAGAAGACGAATTGTCTCGATTCTTCAATGCATTTGAAGAA 1185
Query 1193 TGTGAAGAAATCATTTTAGTCAAACAAACAAAACACACTATTATTCTTTGTAATTACTCT 1252
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1186 TGTGAAGAAATCATTTTAATCAAACAAACAAAACACACTATTATTCTTTGTAGTTACTCT 1245
Query 1253 GTTTCTAAATAAACTGATTTTTTG 1276
||||||||||||||||||||||||
Sbjct 1246 GTTTCTAAATAAACTGATTTTTTG 1269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47768015001
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5