BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G02860.2 Length=1288 Score E Sequences producing significant alignments: (Bits) Value Ahg477529 jgi|Araly1|477529|fgenesh2_kg.3__230__AT3G02860.2 1773 0.0 > Ahg477529 jgi|Araly1|477529|fgenesh2_kg.3__230__AT3G02860.2 Length=1259 Score = 1773 bits (960), Expect = 0.0 Identities = 1158/1250 (93%), Gaps = 28/1250 (2%) Strand=Plus/Plus Query 1 AAGTCTAATCCCGAGTTGGATCGACCCGACCCGTAAAAGAGAAGAGATTGCGGAGAAGAA 60 |||||||| ||||| |||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 1 AAGTCTAAACCCGACTTGGATCGACCCGACCCGTAAACGAGAACAGATTGCGGAGAAGAA 60 Query 61 CGGAG-G-G--AGGAATTTTGATTCTCACGGTGACTGTTGTCCTCCTCTAAGGACTTAGG 116 ||||| | | ||||||||||||||| | || | | |||||| ||||| Sbjct 61 CGGAGTGAGCCAGGAATTTTGATTCT--C----AC-G--G--------TAAGGATTTAGG 103 Query 117 GTTTGATTTGAATAGAACAAATTTCTCAGATCTTCGTAT-TCCTTGCGAGGTTGTGATAA 175 ||||| |||| ||||| ||||||||||||||||| || | ||| || |||| |||||| Sbjct 104 GTTTGTTTTGTGTAGAAGGAATTTCTCAGATCTTCGAATAT-CTTCCGTGGTTCTGATAA 162 Query 176 TTTGGGAGTTGCGTGGGTTGCTACGAAGGAGAGTGATGGATGCTCAAGCGAAGAAGAAGG 235 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 163 TTTGGGAGTTGCGTGGGTTGCTTCGAAGGAGAGTGATGGATGCTCAAGCGAAGAAGAAGG 222 Query 236 CCATGTTCCGGTCTAAACTCAACGCCAAGAAGAAAGACACCCGCATAGATTCTCCTCTCG 295 | ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 223 CGATGTTTCGCTCTAAACTCAACGCCAAGAAGAAAGACACCCGCATAGATTCTCCTCTCG 282 Query 296 TTAGGTACAACGAATCAGACCAGCCTGTGTGTCGAGTTTGCAATGTCGTCTTGAAATCTG 355 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 283 TTAGGTACAACGAATCAGACCAGCCTGTGTGTCGAGTTTGCAATGTCGTCTTGAAATCTG 342 Query 356 AATCACTCTGGGATGTACATCAAGCTTCTCGTAAGCACCACGAGGCCATTGATAGTCTCA 415 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||| | Sbjct 343 AATCACTCTGGGATGTTCATCAAGCTTCTCGTAAGCACCACGAGGCAATTGATAATCTGA 402 Query 416 AGGCTAGTGCAGCGGGAGTCCAACGGGGTAGCAAACCTGCTGAAACTCGGCCAACGAAAA 475 ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||| Sbjct 403 AGGCTAGTGCAGCGGGAGTTCAACGGGGTAGTAAACCTGCTGAAACTCGGCCAACAAAAA 462 Query 476 TTGAAGCTTTGGCTAAATCATCCAATTCTCAGACATCATCTGGTCTTCCGCCAAATTTCT 535 |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 463 CTGAAGCTTTGGCTAAATCATCCAAATCTCAGACATCATCTGGTCTTCCACCAAATTTCT 522 Query 536 TCGAAAATCGTGAGCCTGCTAGAGCAGAAGTAGAACCAGCAAAATCCAAGAATTTAGAGC 595 ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 523 TCGAAAATCATGAGCCTGCTAGAGCAGAAGTAGAACCAGCAAAATCCAAGAATATAGAGC 582 Query 596 AATCAAAGCACACTATAGGATCTGAAACAAATAAGTCAAAGGGACCTCTTCCAGCCGGAT 655 |||||||||| |||||||| || |||||||| || |||||||||||||||||||| |||| Sbjct 583 AATCAAAGCAGACTATAGGTTCAGAAACAAACAATTCAAAGGGACCTCTTCCAGCTGGAT 642 Query 656 TCTTTGATAATCAGAAAACTGATTCTTCAAATACCAAAACCACCAGTGAACCTAAACAGA 715 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 643 TCTTTGATAATCAGAAAACTGATTCTTCAAATACCAAAACCACCAGTGAACCTAAACAGA 702 Query 716 GTCAGACACAGACCACTGGTCCAGAAACAAAACCAATGGTGAATGGAAACCTTCCAACCG 775 |||||||||||||||||||| | ||||||||| | ||||||| ||||||||||| |||| Sbjct 703 GTCAGACACAGACCACTGGTTCTGAAACAAAATCTGTGGTGAAAGGAAACCTTCCGACCG 762 Query 776 GtttttttGATAATAAAGAAGCTGACCTGCTTGCCCATGGAATCAAGCTCGTCAAACCAG 835 |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct 763 GTTTTTTTGATAATAAAGAAGCTGACTTGCTTGCCCATGGAATAAAGCTCGTCAAACCAG 822 Query 836 ATATCAAGGATGAATATAAAGAATTTGAGAAGTTGATACAAGATGAT-TTGCAGGTAGTG 894 ||||||| ||||||||||||||||||||||||||||||||||| || || ||||||||| Sbjct 823 ATATCAAAGATGAATATAAAGAATTTGAGAAGTTGATACAAGAAGACCTT-CAGGTAGTG 881 Query 895 GATAGCCGCATGGAAGAAGAAGAGGTTGATGCTGCGGAAACTATAGAAGAGGAGGAACAA 954 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 882 GATAGCCGCATGGAAGAAGAAGAGGTTGATGCTGCGGAAACTATAGAAGAGGAGGAACAA 941 Query 955 CGAGAGCAAAGATCATACAAAGAGAAAGTAGAGATTCTGAAGAGGAAGAAAATGGAACTT 1014 |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct 942 CGAGAGCAAAGATCATACAAAGAGAAAGTAGAGATTCTAAAGAGGAGGAAAATGGAACTT 1001 Query 1015 AAAGCGGCAAGATTAGCGAAGCGCAGTAAAACCTCTGAGGGGTCTGTTAAAAAGCCGAAG 1074 ||||| || |||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 1002 AAAGCAGCTAGATTAGCTAAGCGTAGTAAAACCTCTGAGGGGTCTGTTAAAAAGCCGAAG 1061 Query 1075 AAGACAGAAGAAGAATCGCC-CAGCGATGAGGAGGATGACGAGGATTCTGCTGTTGATTG 1133 ||||| || |||||||| || ||||||||||||||||||||||||||| ||||||||||| Sbjct 1062 AAGACCGAGGAAGAATC-CCTCAGCGATGAGGAGGATGACGAGGATTCCGCTGTTGATTG 1120 Query 1134 GAGAGCTCAACATCTTTGAATAAA-CTAGAAAAGACTGTTTAAAAATCTGTACCCTGGTA 1192 |||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||| Sbjct 1121 GAGAGCTCAACATCTTTGAATAAAACTATAAAAGACTGTTTCAAAATCTGTACCCTGGTA 1180 Query 1193 AAACATACAATGTTCTATGAGAATATACAGTGAAAACTAATCAATCTCAT 1242 |||||| || |||||| | |||||||||||||||||| |||||||||||| Sbjct 1181 AAACATTCAGTGTTCTCTTAGAATATACAGTGAAAACGAATCAATCTCAT 1230 Score = 58.4 bits (31), Expect = 1e-07 Identities = 31/31 (100%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 1255 ATCAGTTTCAGAGGATCAATTGGTATTTGAG 1285 ||||||||||||||||||||||||||||||| Sbjct 1229 ATCAGTTTCAGAGGATCAATTGGTATTTGAG 1259 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48149244171 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5