BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02860.2
Length=1288
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477529 jgi|Araly1|477529|fgenesh2_kg.3__230__AT3G02860.2 1773 0.0
> Ahg477529 jgi|Araly1|477529|fgenesh2_kg.3__230__AT3G02860.2
Length=1259
Score = 1773 bits (960), Expect = 0.0
Identities = 1158/1250 (93%), Gaps = 28/1250 (2%)
Strand=Plus/Plus
Query 1 AAGTCTAATCCCGAGTTGGATCGACCCGACCCGTAAAAGAGAAGAGATTGCGGAGAAGAA 60
|||||||| ||||| |||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1 AAGTCTAAACCCGACTTGGATCGACCCGACCCGTAAACGAGAACAGATTGCGGAGAAGAA 60
Query 61 CGGAG-G-G--AGGAATTTTGATTCTCACGGTGACTGTTGTCCTCCTCTAAGGACTTAGG 116
||||| | | ||||||||||||||| | || | | |||||| |||||
Sbjct 61 CGGAGTGAGCCAGGAATTTTGATTCT--C----AC-G--G--------TAAGGATTTAGG 103
Query 117 GTTTGATTTGAATAGAACAAATTTCTCAGATCTTCGTAT-TCCTTGCGAGGTTGTGATAA 175
||||| |||| ||||| ||||||||||||||||| || | ||| || |||| ||||||
Sbjct 104 GTTTGTTTTGTGTAGAAGGAATTTCTCAGATCTTCGAATAT-CTTCCGTGGTTCTGATAA 162
Query 176 TTTGGGAGTTGCGTGGGTTGCTACGAAGGAGAGTGATGGATGCTCAAGCGAAGAAGAAGG 235
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 163 TTTGGGAGTTGCGTGGGTTGCTTCGAAGGAGAGTGATGGATGCTCAAGCGAAGAAGAAGG 222
Query 236 CCATGTTCCGGTCTAAACTCAACGCCAAGAAGAAAGACACCCGCATAGATTCTCCTCTCG 295
| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CGATGTTTCGCTCTAAACTCAACGCCAAGAAGAAAGACACCCGCATAGATTCTCCTCTCG 282
Query 296 TTAGGTACAACGAATCAGACCAGCCTGTGTGTCGAGTTTGCAATGTCGTCTTGAAATCTG 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 TTAGGTACAACGAATCAGACCAGCCTGTGTGTCGAGTTTGCAATGTCGTCTTGAAATCTG 342
Query 356 AATCACTCTGGGATGTACATCAAGCTTCTCGTAAGCACCACGAGGCCATTGATAGTCTCA 415
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||| |
Sbjct 343 AATCACTCTGGGATGTTCATCAAGCTTCTCGTAAGCACCACGAGGCAATTGATAATCTGA 402
Query 416 AGGCTAGTGCAGCGGGAGTCCAACGGGGTAGCAAACCTGCTGAAACTCGGCCAACGAAAA 475
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 403 AGGCTAGTGCAGCGGGAGTTCAACGGGGTAGTAAACCTGCTGAAACTCGGCCAACAAAAA 462
Query 476 TTGAAGCTTTGGCTAAATCATCCAATTCTCAGACATCATCTGGTCTTCCGCCAAATTTCT 535
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 463 CTGAAGCTTTGGCTAAATCATCCAAATCTCAGACATCATCTGGTCTTCCACCAAATTTCT 522
Query 536 TCGAAAATCGTGAGCCTGCTAGAGCAGAAGTAGAACCAGCAAAATCCAAGAATTTAGAGC 595
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 523 TCGAAAATCATGAGCCTGCTAGAGCAGAAGTAGAACCAGCAAAATCCAAGAATATAGAGC 582
Query 596 AATCAAAGCACACTATAGGATCTGAAACAAATAAGTCAAAGGGACCTCTTCCAGCCGGAT 655
|||||||||| |||||||| || |||||||| || |||||||||||||||||||| ||||
Sbjct 583 AATCAAAGCAGACTATAGGTTCAGAAACAAACAATTCAAAGGGACCTCTTCCAGCTGGAT 642
Query 656 TCTTTGATAATCAGAAAACTGATTCTTCAAATACCAAAACCACCAGTGAACCTAAACAGA 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 TCTTTGATAATCAGAAAACTGATTCTTCAAATACCAAAACCACCAGTGAACCTAAACAGA 702
Query 716 GTCAGACACAGACCACTGGTCCAGAAACAAAACCAATGGTGAATGGAAACCTTCCAACCG 775
|||||||||||||||||||| | ||||||||| | ||||||| ||||||||||| ||||
Sbjct 703 GTCAGACACAGACCACTGGTTCTGAAACAAAATCTGTGGTGAAAGGAAACCTTCCGACCG 762
Query 776 GtttttttGATAATAAAGAAGCTGACCTGCTTGCCCATGGAATCAAGCTCGTCAAACCAG 835
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 763 GTTTTTTTGATAATAAAGAAGCTGACTTGCTTGCCCATGGAATAAAGCTCGTCAAACCAG 822
Query 836 ATATCAAGGATGAATATAAAGAATTTGAGAAGTTGATACAAGATGAT-TTGCAGGTAGTG 894
||||||| ||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct 823 ATATCAAAGATGAATATAAAGAATTTGAGAAGTTGATACAAGAAGACCTT-CAGGTAGTG 881
Query 895 GATAGCCGCATGGAAGAAGAAGAGGTTGATGCTGCGGAAACTATAGAAGAGGAGGAACAA 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 GATAGCCGCATGGAAGAAGAAGAGGTTGATGCTGCGGAAACTATAGAAGAGGAGGAACAA 941
Query 955 CGAGAGCAAAGATCATACAAAGAGAAAGTAGAGATTCTGAAGAGGAAGAAAATGGAACTT 1014
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 942 CGAGAGCAAAGATCATACAAAGAGAAAGTAGAGATTCTAAAGAGGAGGAAAATGGAACTT 1001
Query 1015 AAAGCGGCAAGATTAGCGAAGCGCAGTAAAACCTCTGAGGGGTCTGTTAAAAAGCCGAAG 1074
||||| || |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1002 AAAGCAGCTAGATTAGCTAAGCGTAGTAAAACCTCTGAGGGGTCTGTTAAAAAGCCGAAG 1061
Query 1075 AAGACAGAAGAAGAATCGCC-CAGCGATGAGGAGGATGACGAGGATTCTGCTGTTGATTG 1133
||||| || |||||||| || ||||||||||||||||||||||||||| |||||||||||
Sbjct 1062 AAGACCGAGGAAGAATC-CCTCAGCGATGAGGAGGATGACGAGGATTCCGCTGTTGATTG 1120
Query 1134 GAGAGCTCAACATCTTTGAATAAA-CTAGAAAAGACTGTTTAAAAATCTGTACCCTGGTA 1192
|||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||
Sbjct 1121 GAGAGCTCAACATCTTTGAATAAAACTATAAAAGACTGTTTCAAAATCTGTACCCTGGTA 1180
Query 1193 AAACATACAATGTTCTATGAGAATATACAGTGAAAACTAATCAATCTCAT 1242
|||||| || |||||| | |||||||||||||||||| ||||||||||||
Sbjct 1181 AAACATTCAGTGTTCTCTTAGAATATACAGTGAAAACGAATCAATCTCAT 1230
Score = 58.4 bits (31), Expect = 1e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 1255 ATCAGTTTCAGAGGATCAATTGGTATTTGAG 1285
|||||||||||||||||||||||||||||||
Sbjct 1229 ATCAGTTTCAGAGGATCAATTGGTATTTGAG 1259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48149244171
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5