BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02880.1
Length=2352
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927779 jgi|Araly1|927779|scaffold_300236.1 2952 0.0
Ahg356181 jgi|Araly1|356181|fgenesh1_pg.C_scaffold_7003354 344 2e-93
Ahg891959 jgi|Araly1|891959|Al_scaffold_0007_3945 257 2e-67
> Ahg927779 jgi|Araly1|927779|scaffold_300236.1
Length=1926
Score = 2952 bits (1598), Expect = 0.0
Identities = 1818/1926 (94%), Gaps = 8/1926 (0%)
Strand=Plus/Plus
Query 151 gaagaagaagaagaagaTGAAGTATAAGCGTAAGCTAAGTCTCTCTGTTGTCTTCCTCTT 210
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 7 GAAGAAGAAGAAGAAGATGAAGTACAAGCGTAAGCTAAGTCTCTCTGTTGTCTTCTTCTT 66
Query 211 TGTCTTCTATCTCGCTGCGGTGACTTCAGATCTAGAGTCTGACCGGAGAGCTTTACTCGC 270
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 67 CGTCTTCTATCTCGCGGCGGTGACTTCAGATCTAGATTCTGACCGGAGAGCTTTACTCGC 126
Query 271 TGTTCGTAACAGTGTCCGTGGCCGTCCTTTGCTATGGAACATGAGTGCTTCTTCTCCTTG 330
||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 127 TGTTCGTAATAGTGTTCGTGGCCGTCCTTTGTTATGGAACATGAGTGCTTCTTCTCCTTG 186
Query 331 TAATTGGCACGGAGTCCAC-TGCGATGCGGGTCGGGTCACGGCTCTCCGATTACCCGGAT 389
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 187 TAATTGGCACGGAGT-CACTTGCGATGCGGGTCGGGTCACGGCTCTCCGATTACCCGGCG 245
Query 390 CTGGTTTATTCGGTTCTTTACCAATCGGTGGTATTGGTAATCTAACCCAGCTTAAGACTC 449
|||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||
Sbjct 246 CTGGTTTATTCGGTTCTTTACCCATCGGTGGAATTGGTAATCTAACCGAGCTTAAGACTC 305
Query 450 TTTCTCTCCGGTTCAATTCTCTCTCTGGTCCTATCCCTTCGGATTTCTCCAACCTTGTTC 509
| |||||||| |||||||||||||||||||| |||||| |||||||||| ||||||||||
Sbjct 306 TCTCTCTCCGATTCAATTCTCTCTCTGGTCCAATCCCTGCGGATTTCTCAAACCTTGTTC 365
Query 510 TCCTCCGTTACTTGTATCTTCAAGGTAATGCCTTTTCCGGTGAGATTCCGTCGCTTCTCT 569
||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||
Sbjct 366 TCCTCCGTTACTTGTATCTCCAAGGTAATGACTTTTCCGGTGAGATTCCGTCGTTTCTCT 425
Query 570 TCACGCTTCCGAGCATAATCAGAATCAATCTAGGGGAGAATAAATTCTCGGGTCGGATCC 629
|||||||||| | | |||||||| | ||||| ||||||||||| ||||||||||||||||
Sbjct 426 TCACGCTTCCAAACCTAATCAGACTTAATCTTGGGGAGAATAAGTTCTCGGGTCGGATCC 485
Query 630 CGGATAATGTCAATTCTGCGACCCGGTTGGTTACTCTGTATTTGGAGAGGAATCAACTCT 689
||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||
Sbjct 486 CGGATAATGTCAATTCTGCAACCCGGTTGATTACTCTGTATTTAGAGAGGAATCAACTCT 545
Query 690 CTGGTCCGATCCCTGAGATCACGCTTCCTCTTCAGCAATTCAATGTTTCTTCTAATCAGT 749
| ||||||||||||||||||||||||| |||||| || |||||||||||||||||||| |
Sbjct 546 CAGGTCCGATCCCTGAGATCACGCTTCGTCTTCAACAGTTCAATGTTTCTTCTAATCAAT 605
Query 750 TAAACGGGTCTATTCCGAGTTCGTTGTCGTCTTGGCCTCGAACTGCTTTTGAAGGTAACA 809
||||||| || ||||||| |||||||||| ||||||||||||| ||||||||||| ||||
Sbjct 606 TAAACGGATCGATTCCGAATTCGTTGTCGACTTGGCCTCGAACCGCTTTTGAAGGGAACA 665
Query 810 CTCTCTGTGGGAAGCCTTTAGACACTTGTGAGGCAGAGAGCCCCAATGGTGGTGACGCTG 869
|||||||||||||||| ||| ||||||||||||||||||||||||| | |||||||||
Sbjct 666 CTCTCTGTGGGAAGCCCTTAAACACTTGTGAGGCAGAGAGCCCCAA---TAGTGACGCTG 722
Query 870 GAGGACCCAATACGCCGCCGGA-GAAGAAAGATAGCGACAAGTTATCCGCCGGAGCTATT 928
|||| ||||||||||||||| | ||| || ||||||||||| ||||||||||||||||||
Sbjct 723 GAGGTCCCAATACGCCGCCGAAGGAA-AAGGATAGCGACAAATTATCCGCCGGAGCTATT 781
Query 929 GTCGGGATTGTGATCGGATGTGTTGTTGGTCTGTTACTGCTTCTTTTGATTCTGTTCTGT 988
| ||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 782 GCCGGAATTGTGATCGGATGTGTTGTTGGTCTATTGCTGCTTCTTTTGATTCTGTTCTGT 841
Query 989 CTCTGTagaaagagaaagaaagaagagaaCGTTCCATCTAGGAATGTTGAAGCTCCTGTC 1048
||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||
Sbjct 842 CTCTGTAGAAAGAGAAAGAAAGAAGAGAACGTTACAGCTAGAAATGTTGAAGCTCCTGTC 901
Query 1049 GCTGCTGCGACTTCCTCCGCTGCTATACCAAAGGAAACGGTGGTTGTTGTCCCGCCGGCT 1108
|| ||| |||| ||||| ||||||||||| ||||||| |||||||| ||||||||||||
Sbjct 902 GCCGCTCCGACCTCCTCAGCTGCTATACCCAAGGAAAGGGTGGTTGATGTCCCGCCGGCG 961
Query 1109 AAGGCTACGGGGTCGGAGAGTGGTGCGGTGAATAAAGATTTGACCTTTTTCGTGAAATCT 1168
|||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 962 AAGGCTACGGCTTCGGAGAGTGGTGTGGTGAGTAAAGATTTGACCTTTTTCGTGAAATCT 1021
Query 1169 TTCGGGGAATTCGATTTGGATGGATTGTTGAAGGCTTCAGCTGAGGTTCTTGGGAAAGGA 1228
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1022 TTCGGGGAATTCGATTTGGATGGATTGTTGAAGGCTTCAGCTGAGGTCCTTGGGAAAGGA 1081
Query 1229 ACAGTTGGGTCGTCGTATAAGGCAAGCTTTGAGCATGGGTTAGTGGTGGCTGTGAAACGG 1288
||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 1082 ACAGTTGGGTCTTCGTATAAGGCAAGCTTTGATCATGGATTAGTGGTGGCTGTGAAGCGT 1141
Query 1289 TTAAGAGATGTTGTGGTGCCTGAGAAAGAGTTCAGAGAGAGATTGCATGTTTTGGGATCA 1348
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1142 TTAAGAGACGTTGTGGTGCCTGAGAAAGAGTTCAGAGAGAGATTGCAGGTTTTGGGATCA 1201
Query 1349 ATGAGTCATGCCAATCTCGTGACTCTGATCGCTTACTATTTCAGCCGTGACGAGAAGCTT 1408
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1202 ATGAGTCATGCCAATCTTGTGACTCTGATCGCTTACTATTTCAGCCGCGACGAGAAGCTT 1261
Query 1409 CTTGTCTTTGAGTACATGTCTAAAGGAAGCTTGTCTGCGATATTGCACGGGAACAAAGGA 1468
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1262 CTTGTCTTTGAGTACATGTCTAGAGGAAGCTTGTCTGCGCTATTGCACGGGAACAAAGGA 1321
Query 1469 AACGGGAGAACTCCGTTGAACTGGGAAACCAGAGCCGGTATAGCCTTAGGAGCTGCAAGA 1528
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1322 AACGGGAGAACTCCGTTGAACTGGGAAACTAGAGCCGGTATAGCCGTAGGAGCTGCAAGA 1381
Query 1529 GCGATTAGCTACCTACATTCGCGTGATGGGACAACTTCTCATGGAAACATTAAGTCCTCG 1588
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1382 GCGATTAGCTACCTACATTCGCGTGATGCCACAACTTCTCATGGAAACATTAAGTCCTCG 1441
Query 1589 AACATACTATTATCTGACTCCTATGAAGCTAAGGTCTCTGATTACGGTCTTGCTCCCATC 1648
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1442 AACATACTATTATCTGACTCCTATGAAGCTAAGGTCTCTGATTACGGTCTTGCTCCTATC 1501
Query 1649 ATTAGTTCTACATCTGCACCTAACCGTATTGATGGCTACCGTGCCCCTGAAATCACTGAT 1708
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1502 ATTAGTTCTACATCTGCACCTAACCGTATTGATGGCTACCGTGCCCCTGAAGTCACCGAT 1561
Query 1709 GCTCGCAAAATATCCCAAAAAGCTGATGTCTATAGCTTTGGCGTCCTAATCCTTGAATTA 1768
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1562 GCTCGCAAAATCTCCCAAAAAGCTGATGTCTATAGCTTTGGCGTCCTAATCCTTGAATTA 1621
Query 1769 CTCACAGGTAAGTCTCCAACGCATCAGCAGTTGAATGAAGAAGGCGTAGATTTGCCGAGA 1828
||||||||||||||||||||||||||||| |||||||||||||| || |||||||| |||
Sbjct 1622 CTCACAGGTAAGTCTCCAACGCATCAGCAATTGAATGAAGAAGGTGTCGATTTGCCAAGA 1681
Query 1829 TGGGTCCAATCTGTTACCGAGCAACAAACACCGTCCGATGTGCTTGATCCCGAGCTCACA 1888
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1682 TGGGTCCAATCTGTTACCGATCAACAATCACCGTCCGATGTGCTTGATCCCGAGCTCACA 1741
Query 1889 AGGTACCAACCTGAGGGCAATGAGAACATCATTCGTTTATTGAAGATCGGTATGAGCTGT 1948
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1742 AGGTACCAACCTGAGGGCAATGAGAACATCATTCGTTTATTGAAGATCGGTATGAGTTGT 1801
Query 1949 ACGGCTCAGTTCCCAGATAGTCGTCCTTCGATGGCTGAAGTCACCAGACTCATTGAGGAG 2008
|||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1802 ACGGCTCAATTCCCAGATAGTCGTCCTTCAATGGCCGAAGTCACCAGACTCATTGAGGAG 1861
Query 2009 GTTTCTCATTCATCTGGCTCCCCAAATCCTGTATCCGACTGATTTTTTGGGGGTCTAAAT 2068
||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1862 GTTTCCCATTCATCTGGCTCCCCAAATCCAGTATCCGACTGATTTTT-GGGGGTCTAAAT 1920
Query 2069 TGATTG 2074
||||||
Sbjct 1921 TGATTG 1926
> Ahg356181 jgi|Araly1|356181|fgenesh1_pg.C_scaffold_7003354
Length=1872
Score = 344 bits (186), Expect = 2e-93
Identities = 501/649 (77%), Gaps = 38/649 (6%)
Strand=Plus/Plus
Query 199 TGTCTTCCTCTTTGTCTTCTATCTCGCTGCGGTGACTTCAGATCTAG-AGTCTGACCGGA 257
||||||| ||||| |||||| |||| | | || || |||||||||| || |||| | ||
Sbjct 30 TGTCTTCTTCTTTCTCTTCTGTCTCATTTCCGTAACATCAGATCTAGAAG-CTGATC-GA 87
Query 258 -GAGCTTTACTCGCTGTTCGTAACAGTGTCCGTGGCCGTCCTTTGCTATGGAACATGAGT 316
|||| ||| | ||| | ||| | |||||| ||||||||| ||||| ||||| | | |
Sbjct 88 CGAGCATTAATAGCTCTCCGTGATGGTGTCCATGGCCGTCCATTGCTCTGGAA-TTTA-T 145
Query 317 GCTTCTTCTCCTTGTAATT-GGCACGGAGTCCACTGCGATGCGGGTCGGGTCACGGCTCT 375
| | | || |||| || || | |||||||| || ||| ||||||||||||| || ||
Sbjct 146 -CAGCACCACCGTGTACTTGGGGA-GGAGTCCAATGTGATTCGGGTCGGGTCACAGCACT 203
Query 376 CCGATTACCCGGATCT-GGTTTATTC-GGTTCTTTACCAATCGGTGGTATTGGTAATCTA 433
|||||||||||| | | |||||| || ||| | ||||||||| | || || || |||
Sbjct 204 CCGATTACCCGG-TGTGGGTTTA-TCTGGTCCATTACCAATC---GCCATCGGAAACCTA 258
Query 434 ACCCAGCT-TAAGACTCTT-TCTCTCCGGTTCAATTCTCTCT-CTGGTCCTATCCCTTCG 490
|| |||| || ||| || ||| |||| |||||| |||| | ||||||| |||| ||
Sbjct 259 ACAAAGCTCGAA-ACT-TTATCTTTCCGATTCAATGCTCT-TAATGGTCCTCTCCCGCCG 315
Query 491 GATTTCTCCAACCTTGTTCTCCTCCGTTACTTGTATCTTCAAGGTAATGCCTTTTCCGGT 550
|||||| | ||||| ||||||||| ||||||||||||||||| || || ||||||||
Sbjct 316 GATTTCGCTAACCTAACTCTCCTCCGATACTTGTATCTTCAAGGAAACGCATTTTCCGGC 375
Query 551 GAGATTCCGTCGCTTCTCTTCACGCTT-CCGAGCA-TAATCAGAATCAATCTAGGGGAGA 608
|||||||| ||| |||||||||| || || | || || || | |||||||| | | |
Sbjct 376 GAGATTCCTTCGTTTCTCTTCAC-TTTACCAAACATTATTC-GGATCAATCTCGCTCAAA 433
Query 609 ATAAATTCTCGGGTCGGATCCCGGATAATGTCAATTCTGCGACCCGGTTGGTTACTCTGT 668
| || |||||||||||||||||||||||||||||||| ||||||||||| | |||||| |
Sbjct 434 ACAATTTCTCGGGTCGGATCCCGGATAATGTCAATTCAGCGACCCGGTTAGCTACTCTTT 493
Query 669 ATTTGGAG-AGGAATCAACTCT-CTGGTCCGATCCCTGAGATCACGCTTCCTCTTCAGCA 726
| ||| || | |||||||| | ||||||||||||| ||||| | | || ||||||||
Sbjct 494 ACTTGCAGGAT-AATCAACT-TACTGGTCCGATCCCGGAGATTAAGATTAAGCTTCAGCA 551
Query 727 ATTCAATGTTTCTTCTAATCAGTTAAACGGGTCTATTCCGAGTTC-GTTGTCGTCT-TGG 784
|| ||||| || || ||||||||||||||||| |||||| | || ||||||| | ||
Sbjct 552 GTTTAATGTCTCGTCGAATCAGTTAAACGGGTCGATTCCG-GATCCGTTGTCGGGTATG- 609
Query 785 CCTCGAA-CTGCTTTTGAAGGTAACACT-CTCTGTGGGAAGCCTTTAGA 831
|| | || | |||||| ||| || | || ||||||||||| |||||
Sbjct 610 CC-CAAAACCGCTTTTTTAGGGAATT-TGCTATGTGGGAAGCCGTTAGA 656
> Ahg891959 jgi|Araly1|891959|Al_scaffold_0007_3945
Length=492
Score = 257 bits (139), Expect = 2e-67
Identities = 362/467 (78%), Gaps = 26/467 (6%)
Strand=Plus/Plus
Query 199 TGTCTTCCTCTTTGTCTTCTATCTCGCTGCGGTGACTTCAGATCTAG-AGTCTGACCGGA 257
||||||| ||||| |||||| |||| | | || || |||||||||| || |||| | ||
Sbjct 30 TGTCTTCTTCTTTCTCTTCTGTCTCATTTCCGTAACATCAGATCTAGAAG-CTGATC-GA 87
Query 258 -GAGCTTTACTCGCTGTTCGTAACAGTGTCCGTGGCCGTCCTTTGCTATGGAACATGAGT 316
|||| ||| | ||| | ||| | |||||| ||||||||| ||||| ||||| | | |
Sbjct 88 CGAGCATTAATAGCTCTCCGTGATGGTGTCCATGGCCGTCCATTGCTCTGGAA-TTTA-T 145
Query 317 GCTTCTTCTCCTTGTAATT-GGCACGGAGTCCACTGCGATGCGGGTCGGGTCACGGCTCT 375
| | | || |||| || || | |||||||| || ||| ||||||||||||| || ||
Sbjct 146 -CAGCACCACCGTGTACTTGGGGA-GGAGTCCAATGTGATTCGGGTCGGGTCACAGCACT 203
Query 376 CCGATTACCCGGATCT-GGTTTATTC-GGTTCTTTACCAATCGGTGGTATTGGTAATCTA 433
|||||||||||| | | |||||| || ||| | ||||||||| | || || || |||
Sbjct 204 CCGATTACCCGG-TGTGGGTTTA-TCTGGTCCATTACCAATC---GCCATCGGAAACCTA 258
Query 434 ACCCAGCT-TAAGACTCTT-TCTCTCCGGTTCAATTCTCTCT-CTGGTCCTATCCCTTCG 490
|| |||| || ||| || ||| |||| |||||| |||| | ||||||| |||| ||
Sbjct 259 ACAAAGCTCGAA-ACT-TTATCTTTCCGATTCAATGCTCT-TAATGGTCCTCTCCCGCCG 315
Query 491 GATTTCTCCAACCTTGTTCTCCTCCGTTACTTGTATCTTCAAGGTAATGCCTTTTCCGGT 550
|||||| | ||||| ||||||||| ||||||||||||||||| || || ||||||||
Sbjct 316 GATTTCGCTAACCTAACTCTCCTCCGATACTTGTATCTTCAAGGAAACGCATTTTCCGGC 375
Query 551 GAGATTCCGTCGCTTCTCTTCACGCTT-CCGAGCA-TAATCAGAATCAATCTAGGGGAGA 608
|||||||| ||| |||||||||| || || | || || || | |||||||| | | |
Sbjct 376 GAGATTCCTTCGTTTCTCTTCAC-TTTACCAAACATTATTC-GGATCAATCTCGCTCAAA 433
Query 609 ATAAATTCTCGGGTCGGATCCCGGATAATGTCAATTCTGCGACCCGG 655
| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 434 ACAATTTCTCGGGTCGGATCCCGGATAATGTCAATTCAGCGACCCGG 480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88597909870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5