BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02885.1
Length=640
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317170 jgi|Araly1|317170|fgenesh1_pm.C_scaffold_3000186 483 9e-136
> Ahg317170 jgi|Araly1|317170|fgenesh1_pm.C_scaffold_3000186
Length=294
Score = 483 bits (261), Expect = 9e-136
Identities = 283/294 (96%), Gaps = 0/294 (0%)
Strand=Plus/Plus
Query 45 ATGGCGAATTGTATCAGAAGAAATGCTCTTTTCTTCTTGACTCTTCTCTTTTTATTGTCA 104
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1 ATGGCGAATTGTATCAGAAGAAATGCTCTTTTCTTTTTGACTCTTCTCTTTTTACTGTCA 60
Query 105 GTCTCCAACCTCGTTCAGGCTGCTCGTGGTGGTGGCAAACTCAAACCCCAACAGTGCAAC 164
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 61 GTCTCCAACCTCGTTCAGGCTGCTCGTGGTGGTGGCAAACTCCAACCCCAACAATGCAAC 120
Query 165 TCAAAGTGTAGCTTCCGTTGTTCAGCAACATCACACAAGAAGCCATGCATGTTCTTTTGC 224
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCAAAGTGTAGCTACCGTTGTTCAGCAACATCACACAAGAAGCCATGCATGTTCTTTTGC 180
Query 225 CTCAAGTGTTGCAAAAAATGTCTTTGTGTTCCTCCTGGCACTTTCGGCAACAAACAAACT 284
||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||| |
Sbjct 181 CTCAAGTGTTGCAAAAAATGTCTTTGTGTTCCTTCTGGTACTTACGGCAACAAACAAAGT 240
Query 285 TGTCCATGTTACAACAACTGGAAGACTAAAGAAGGCCGTCCAAAATGTCCTTAA 338
|||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 241 TGTCCATGTTACAACAACTGGAAGACTAAAGAAGGCGGCCCAAAATGTCCTTAA 294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23445593955
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5