BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02890.1
Length=3515
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477535 jgi|Araly1|477535|fgenesh2_kg.3__236__AT3G02890.1 2207 0.0
> Ahg477535 jgi|Araly1|477535|fgenesh2_kg.3__236__AT3G02890.1
Length=2910
Score = 2207 bits (1195), Expect = 0.0
Identities = 1392/1484 (94%), Gaps = 26/1484 (2%)
Strand=Plus/Plus
Query 1651 GTGGGGGATTCATCTAAGAATGAAAAGTGTAGTTCAAGTGAGCAAATATCAAGTGAAGCG 1710
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1411 GTGGGGGATTCATCTAAAAATGAAAAGTGTAGTTCAAGCGAGCAAATATCAAGTGAAGCG 1470
Query 1711 AAATGTAAAGATGAACTGGCACAAGTAGATGGTGTACCCCGGTCGAGGGAATTCAGAGAG 1770
||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||
Sbjct 1471 AAATGTAAAGATGAACTGGCACATGTAGATGGTTTACCTCGGTCGAGGGAATTCAGAGAG 1530
Query 1771 GCGGGGGAGAAAACCAAAGATGCTGTTGGTAATCACCAAAAGCGAAATATTGGCGAGGAT 1830
||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1531 GCGGGGGAGAAAAGCAAAGATGCTGTTGGTAATCACCAAAAGCAAAATATTAGCGAGGAT 1590
Query 1831 AATAATAAGGGCAATAGGTTGCGAGCAGCGGTTGATGCTGCACTGCGaaaaaaaCCCAGC 1890
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1591 ATTAATAAGGGCAATAGGTTGCGAGCAGCGGTTGATGCTGCACTGCGTAAAAAACCCAGC 1650
Query 1891 TTTAGCAAAAACAGAGGGTTGGAGCAATCTGATTTGCCTCCAGTGTCTAATGTGGATTCT 1950
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1651 TTTAGCAAAAACAGAGGGTTGGAGCAATCTGATTTGCCTTCAGTGTCTAATGTGGATTCC 1710
Query 1951 GGTTGTAATAAGGCTTTAAAATGTTTGTCCTCAAAGGTGCCGGTCATAAGAGATTGGCCT 2010
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1711 GGTTGTAATAAGGCTTTAAAAAGTTTACCCTCAAAGGTGCCGGTCATAAGAGATTGGCCT 1770
Query 2011 GTGGGATTCCAAGGATTGCCAGGAGGGCATCCAAATTTACGGACAGACAAGCAGACAAAT 2070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1771 GTGGGATTCCAAGGATTGCCAGGAGGGCATCCAAATTTACGGACAGACAAGCAGACAAAT 1830
Query 2071 ACAGTAAATGAAAAGCAGTTTACACTCGCTGGTACTGATGCAACGACTGCTTCCCAATCT 2130
||||||||||||| |||| ||||||||||||||||||||||| | ||||||||||||||
Sbjct 1831 GCAGTAAATGAAAACCAGTCTACACTCGCTGGTACTGATGCAATGGCTGCTTCCCAATCT 1890
Query 2131 GTTGAGCCCGAAGTTAACGATCCTTCTGTACAATCGGTCATGAGAGATTTGCCTGTGGCT 2190
||||||| |||||||| |||||||||| || | ||||||||||||||||||||||||
Sbjct 1891 GTTGAGCTTGAAGTTAATTTTCCTTCTGTAAAACCAGTCATGAGAGATTTGCCTGTGGCT 1950
Query 2191 GCCCCAAATGTTCTGTCGACAACCTCAGCCATCCCAAAGCCTGAGTATATTTGGCAAGGG 2250
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1951 GCCCCAAATGTTCTGTCGACAACCTCAGCCATCCCAGAGCATGAGTATATTTGGCAAGGG 2010
Query 2251 GACTTGGAGGTGCAGAAAAGCAGAAATTTGTCAGCAATGCATAGTGGAATACAAGCGTAT 2310
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2011 GACTTGGAGGTGCAGAAAAGCAGAAATTTATCAGCAATGCATAGTGGAATACAAGCGTAT 2070
Query 2311 CTTTCAACCTTAGCTTCACCTAAGGTGGTTGAAGTGGTGAAACAATTTCCTGAAAAAGTC 2370
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2071 CTTTCAACCTCAGCATCACCTAAGGTGGTTGAAGTGGTGAAACAATTTCCTGAAAAAGTC 2130
Query 2371 ACCTTGAATGAAGTACCCAGGCTTAGTTCATGGCCTGCACAGTTTCAAGATACAGGTGCT 2430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2131 ACCTTGAATGAAGTACCCAGGCTTAGTTCATGGCCTGCACAGTTTCAAGATACAGGTGCT 2190
Query 2431 AAGGAACAGCATGTGGCTCTTTTCTTCTTTGCCAAGGACATCGAGAGTTATGAGAAAAAT 2490
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2191 AAGGAACAACATGTGGCTCTTTTCTTCTTTGCCAAGGACATCGAGAGTTATGAGAAAAAT 2250
Query 2491 TATAAGCCTCTGGTAGATAACATGATTCAGAAAGATTTAGCCCTAAAGGGAAACCTCGAG 2550
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2251 TATAAGCCTCTGGTAGATAACATGATTCAGAAAGATTTAGCCCTAAAGGGAAGCCTCGAG 2310
Query 2551 GGCGTTGAGCTTTTGATATTTGCGTCCAACCAGCTTCCTCAAGATTGCCAGCGCTGGAAC 2610
|| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2311 GGTGTTGAGCTTTTGATTTTTGCGTCCAACCAGCTTCCTCAGGATTGCCAGCGCTGGAAC 2370
Query 2611 ATGTTATTTTTCCTTTGGGGTGTATTCCGAGGaaaaaaaGAGAGTTGCTCTAATCCACCA 2670
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2371 ATGTTATTTTTCCTTTGGGGTGTATTCCGAGGAAAAAAAGAGAGTTGCTCTAATCCACCC 2430
Query 2671 AAGAACACACCCCTCCCGGCATCTTGTGTTTCGCCAAAT----------C---------- 2710
|||||||||| || ||||| |||||||||| ||||||| |
Sbjct 2431 AAGAACACACGTCTTCCGGCGTCTTGTGTTTTGCCAAATATGAAGAAAGCTTTTTCTACT 2490
Query 2711 -GTGATACCTTTCGCCATGAGAATCCAAGCAACAAAAAGTCTTTGACTGATCGCACATTG 2769
|||| ||||||| |||||||||||||||||||| | ||||||||||||||||||| | |
Sbjct 2491 CGTGAGACCTTTCACCATGAGAATCCAAGCAACAGAGAGTCTTTGACTGATCGCACGTCG 2550
Query 2770 AGCAGAATGCAATCGTGTATGAAGGAGGAGGATGCTAAAGAGGGTAAAGCGTGCAGTGGC 2829
| ||||||||||||||| |||||||||||| | ||||||||||||||||||||| ||| |
Sbjct 2551 AACAGAATGCAATCGTGCATGAAGGAGGAGAAAGCTAAAGAGGGTAAAGCGTGCGGTGCC 2610
Query 2830 ACTGAGAAGGAGAATGCATTCTCTGTTTCATATGGAGAAGGTGAAGTGGATGTAGAAA-C 2888
| ||||||||||||||||||||||||||||||||||||| ||| ||||| || ||||| |
Sbjct 2611 ATTGAGAAGGAGAATGCATTCTCTGTTTCATATGGAGAACGTGGAGTGGCTGAAGAAATC 2670
Query 2889 TGAGGAAGGAGAGATAGGTGTTAGCCCACAGTTGAAGTATGAGAAGACGGCAGGGCCTGG 2948
||||||||||||||||||||||||||||| |||||| |||||||||||| || |||||
Sbjct 2671 -GAGGAAGGAGAGATAGGTGTTAGCCCACACTTGAAGGATGAGAAGACGG--GG-CCTGG 2726
Query 2949 GACAGTGAAATCCGCCGACATGAACCAGAGAGTGAACGTGGATGATCTGAATAAAGAAGG 3008
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2727 GACAGTGAAATCCTCCGACATGAACCAGAAAGTGAACGTGGATGATCTGAATAAAGAAGG 2786
Query 3009 GCTGTGTGAAGGTCCAGCGAATAAAAAGCTGAAGACAGTTACAGGAGTAGAAACTGGATG 3068
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2787 GTTGTGTGAAGGTCCAGCGAATAAAAAGCTGAAGACAGTTACAGGAGTAGAAACTGGATG 2846
Query 3069 TAGCATTGTCAGGAGGGATACATCTGTTCATAAATTTGCTTCAA 3112
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2847 TAGCATTGTCAGGAGGGATACATCTGTTCATAAATTTGCTTCAA 2890
Score = 2135 bits (1156), Expect = 0.0
Identities = 1332/1418 (94%), Gaps = 8/1418 (1%)
Strand=Plus/Plus
Query 172 ATGGGTCGCAGAGGTCGTCTTGAAATACAGTCTGGAACTTGTAATGTCTGCTCTGCTCCT 231
|||||||||| | |||||| | |||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTCGCAAAAGTCGTCCTAAAATGCAGTCTGGAACTTGTAATGTCTGCTCTGCTCCT 60
Query 232 TGTTCATCTTGCATGCATCATAATGCGGAATTTTCCGGTTCAAAGTCAGATGAGTCATCA 291
||||||||||||||||||| ||||||||||||| || ||||||||||||| |||||||||
Sbjct 61 TGTTCATCTTGCATGCATCGTAATGCGGAATTTACCAGTTCAAAGTCAGACGAGTCATCA 120
Query 292 GATGAAAACTCCCATGGTGTACTGGCAAGCCAGTGTTCTTTCAACGGGGACAATCTTTTG 351
||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 121 GATGAGAACTCCCATGGTGTAGTGGCGAGCCAGTGTTCTTTCAACGGGGACAATCTTTTG 180
Query 352 CGTTCTTCTGGGGTTAATGCTCCCGGCAGTTCACATAACACTTCTAGTGAAGCGAGCCAT 411
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 CGTTCTTCTGGGGTTAATGCTCCCGGCAGTTCACATAACACTGCTAGTGAAGCGAGCCAT 240
Query 412 CTGGTTAATTCCAATCATGATACTTCATCTGAGAATGCTGAGAGTAAGGAAATTATAAGA 471
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 241 CTGGTTAATTCCAATCGTGATACTTCATCTGAGAATGCTGAGAGTATGGAAATTATAAGA 300
Query 472 TCTTCTGATATTTCCCATGGCCCATTATTAGATAGGCCTCACAAAGATCAAGATTCCATG 531
|||||||||||||||||||||||| ||||||||||| ||| |||||| |||||||||||
Sbjct 301 TCTTCTGATATTTCCCATGGCCCAATATTAGATAGGTCTCGCAAAGAGCAAGATTCCATC 360
Query 532 AAGGTAGATTCATGTAATGACCATCAGGCCAGAAGCACTCTAGGGCAGGGAAAAGTCAAG 591
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATGGTAGATTCATGTAGTGACCATCAGGCCAGAAGCACTCTAGGGCAGGGAAAAGTCAAG 420
Query 592 GAAAAGTCAGGAGCAAAGAATAACGAAGAGAAGAAAAATACTTTAACTGGAAGTTCTAAG 651
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 GAAAAGTCAGGAGCAAATAATAACGAAGACAAGAAAAATACTTTAACTGGAAGTTCTAAG 480
Query 652 CATTCAGGACCAAGGGTCGGGAAGTCAGGAGAAAATGTTCTCTTAAATAAGGCAGATGAA 711
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 CATTCAGGACCAAGGGTTGGGAAGTCAGGAGAAAATGTTCTCTTAAATAACGCAGATGAA 540
Query 712 TCAAACACATCTGCCATGTCTGACAGTGAGAGTGAAAATGATCCTGAAATGCTAGAACTT 771
||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| |
Sbjct 541 TCAAACACATCAGCCATGTCTGAGAGTGAGAGTGAAACTGATCCTGAAATGCT-----T- 594
Query 772 GATGTAAAAGTATGTGATACTTGTGGAGATGCGGGTCGTGAGGATTTACTTGCTATCTGT 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GATGTAAAAGTATGTGATACTTGTGGAGATGCGGGTCGTGAGGATTTACTTGCTATCTGT 654
Query 832 AGTAGATGCAGTGATGGTGCAGAACACACCTATTGTATGCGAGTAATGCTTAAAAAAGTT 891
|| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 655 AGCAGATGCAGTGATGGGGCAGAACACACCTATTGCATGCGAGTAATGCTTAAAAAAGTT 714
Query 892 CCTAAGGGTTATTGGCTTTGTGAAGAGTGCAAGTTTGCTGAGAAAGCAGAAAAGCATAAA 951
|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||
Sbjct 715 CCTAAGGGTTATTGGCTTTGTGAAGAATGCAAGTTTGCTGAGGAAGCAGAAAAGCAGAAG 774
Query 952 CTAGAAACCAAGCGAAAAAGAGAGAGTGAAGTAAAC-GTTAATACACAGATCTCCAGCAA 1010
|||||||||||| |||||||||| ||||| |||||| | |||||||||| |||||||||
Sbjct 775 CTAGAAACCAAGGGAAAAAGAGAAAGTGAGGTAAACAGG-AATACACAGAGCTCCAGCAA 833
Query 1011 AAGGCACATAGATAAATTCGAGGCAGTTCCTGATTCTAAAAGATTGGCAGTTGGGGCTCA 1070
|||||||||||||||||| ||| ||| ||| |||||||||||||||||||||| |||||
Sbjct 834 AAGGCACATAGATAAATTTGAGACAGCTCCAGATTCTAAAAGATTGGCAGTTGAGGCTCC 893
Query 1071 AATAGGATCACCCAAGAGATCTGTTCTCCCAAGAATGTCCACTTTATCCCGAGAAACATC 1130
|| ||| ||||||||||||||||||||||| ||| ||||| |||||||||||||||||||
Sbjct 894 AACAGGGTCACCCAAGAGATCTGTTCTCCCCAGAGTGTCCGCTTTATCCCGAGAAACATC 953
Query 1131 ATTTAAGGGCTTAGAGAAGCCAACGAGAAAGCTAGCTCATTACTCATCTTTCAATAGCCA 1190
||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||| |
Sbjct 954 ATTTAAGGGCTTAGAGAAGCCTGCGAGAAAGCTAGCTCATCACTCATCCTTCAATAGCTA 1013
Query 1191 CTCCAGTGATGACACAGAAAGCACACGATCTACTGACTCACAGCTCCAGTCCCCTAAAGG 1250
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1014 CTCCAGTGATGACACAGAAAGCACACGATCTACTGACTCGCAGCTCCGGTCCCCTAAAGG 1073
Query 1251 TTCGTTTTTGAAGTCCAATTCGTTTAATTCTTTGAGCTCTAGATCAAAAGTGAGACCAGT 1310
||| |||| |||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1074 TTCCTTTTACAAGTCCAATTCGTTTAATTCTTCGAGCTCTAGACCAAAAGTGAGACCAGT 1133
Query 1311 GGATGATGATATGCTTCCACGACAGAAGACTGGGAATGAAAATTCTTCCCTTGAAGTAAA 1370
|||||||| ||||||||||||||||||||||||||| | ||||||||||||||| |||||
Sbjct 1134 GGATGATGTTATGCTTCCACGACAGAAGACTGGGAAAGGAAATTCTTCCCTTGATGTAAA 1193
Query 1371 GGAAGGATTTTCAAAAAATGTAGGCAAATCAATGTCAAGTAGATGTATTGACGTAGGGAG 1430
|||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1194 GGAAGGATTTTCTAAAAATGTAGGGAAATCAATGTCAAGTAGATGTATAGACGTAGGGAG 1253
Query 1431 CTCTAATTGTAATGACTCAAAAGTAAAAGGTTCAAAGCAACTGAAAGATTGGAGCACAGA 1490
||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1254 CTCTAGTTGTAATGACTCAGAAGTAAAAGGTTCAAAGCAACTGAAAGATCGGAGCACAGT 1313
Query 1491 AGCTAACCCTTCAGCATCCATTTCACGTGGCAATTCATCCATTCCTTATGCAAAAAGTCC 1550
|||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1314 AGCTAACCCTTCGGTATCCATTTCACGTGGCAATTCATCCATTCCCTATGCAAAAAGTCC 1373
Query 1551 CCGTGATTTGAAGGATTTGCAGTCTGATGGTAAACAAG 1588
||||||||||||||||||||||||||||||||||||||
Sbjct 1374 CCGTGATTTGAAGGATTTGCAGTCTGATGGTAAACAAG 1411
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132744814624
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5