BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G02900.1

Length=732
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg477536 jgi|Araly1|477536|fgenesh2_kg.3__237__AT3G02900.1          878    0.0  


> Ahg477536 jgi|Araly1|477536|fgenesh2_kg.3__237__AT3G02900.1
Length=621

 Score =  878 bits (475),  Expect = 0.0
 Identities = 559/599 (93%), Gaps = 7/599 (1%)
 Strand=Plus/Plus

Query  25   TTCGTTTTGATGTACAATGGCGTCCTTGGTAGCAGCTCCTATCTCTTTCTCAGGTGACTC  84
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    TTCGTTTTGATGTAAAATGGCGTCCTTGGTAGCAGCTCCTATCTCTTTCTCAGGTGACTC  60

Query  85   TCATGTCAAAGCACACCGAAACTTCAATGCGATTCGCAAGAGCTCTACATTGACTGTTCA  144
            ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct  61   TCATGTCAAAGAACACCGAAACTTCAATGCCATTCGCAAGAGCTCTACATTGACTGTTAA  120

Query  145  AACAAAATCAAACCGCAGTCACAAACTCTCGGTTTCTGCAGGTTACCGTGGGGGAAGTAA  204
            |||||||||||  |||||||||||||||||||| |||||| ||||||| | |||||||||
Sbjct  121  AACAAAATCAATTCGCAGTCACAAACTCTCGGTCTCTGCAAGTTACCGAGCGGGAAGTAA  180

Query  205  GGGTGGTGGAAGTAGTGATTTTGTTACCGGTTTTCTTCTAGGAAGTGCTGTGTTCGGAAC  264
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  181  GGGTGGTGGAAGTAGTGATTTTGTTACCGGTTTTCTTCTAGGAAGTGCTGTGTTTGGAAC  240

Query  265  TCTGGCTTATATCTTTGCTCCACAGATCCGAAGATCAGTGCTGAGCGAGAATGAATATGG  324
            ||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct  241  TCTCGCTTATATCTTTGCTCCACAGATCCGAAGATCAGTGCTGAACGAAAATGAATATGG  300

Query  325  TTTCAAGAAACCGGAGCAGCCGATGTACTATGACGAAGGCCTAGAGGAGAGAAGAGAGAT  384
            ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct  301  TTTCAAGAAACCGGAGCAGCCGATGTACTATGATGAGGGCCTAGAGGAGAGAAGAGAGAT  360

Query  385  ATTGAATGAGAAAATCGGCCAACTCAATTCCGCCATTGACAAGGTTTCGTCGCGTCTGAA  444
            |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct  361  ATTGAATGAGAAAATCGGCCAACTCAATTCAGCCATTGACAACGTTTCGTCGCGTCTGAA  420

Query  445  AGGAGGTCGAAGCGGTAGCAGCAAGAACACTTCTTCGCCGTCTGTCCCAGTTGAAACCGA  504
            ||| ||| ||||||||||||||||||||| |||||||||||||||||| |||||||| ||
Sbjct  421  AGGCGGTAGAAGCGGTAGCAGCAAGAACAGTTCTTCGCCGTCTGTCCCCGTTGAAACTGA  480

Query  505  CGCAGAAGCAGAAGCTACTGCATGATTGAATGTAATGCTCTGCTCCATTTTACCAATTCA  564
            |||||||||||||||||| ||||||||||| |   | |||||||| |||||||||||| |
Sbjct  481  CGCAGAAGCAGAAGCTACCGCATGATTGAA-GC--T-CTCTGCTCTATTTTACCAATTGA  536

Query  565  AAACTGCCTTCCATTGGTTCTGTGGtttttt-tGTTGGAACTATTCCTAGGGGCTTTTC  622
            |||||| |||  |||||||||||| |||||| ||||||||| | |  ||||||||||||
Sbjct  537  AAACTGTCTTTGATTGGTTCTGTG-TTTTTTCTGTTGGAACCAATG-TAGGGGCTTTTC  593



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26952902319


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5