BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02910.1
Length=1108
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477537 jgi|Araly1|477537|fgenesh2_kg.3__238__AT3G02910.1 737 0.0
> Ahg477537 jgi|Araly1|477537|fgenesh2_kg.3__238__AT3G02910.1
Length=840
Score = 737 bits (399), Expect = 0.0
Identities = 543/607 (89%), Gaps = 31/607 (5%)
Strand=Plus/Plus
Query 142 AATCTCTACGTTTAATTTC-TCTT-GTTCAATCATGGGACACGAAACAATGACGCC-G-G 197
||| ||| ||||| || || |||| ||| |||||||||||||||||||||| ||| | |
Sbjct 87 AAT-TCTCCGTTTGATCTCTTCTTCTTTCTATCATGGGACACGAAACAATGATGCCGGCG 145
Query 198 ----CAACAACAACGCTCGTGTTCACGTACGGAACTCT-AAAGAGAGGATTCTCAAATCA 252
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 146 AAAACAACAACAACGCTCGTGTTCACGTACGGAACTCTGAAA-CGAGGATTCTCAAATCA 204
Query 253 TGTCCTGATGCAAGATCTGATCCGATCTGGTGACGCTTCTTTCAAAGGTGTTTACCAAAC 312
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 205 TGTCCTGATGCAAGATCTGATCCGATCCGGTGACGCTTCTTTCAAAGGAGTTTACCAAAC 264
Query 313 TCTAGACAAATATCCTCTCGTCTGTGGACCTTACCGAGTCCCTTTCCTCCTCAACAAACC 372
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 265 TCTAGACAAATATCCTCTCGTCTGTGGACCTTATCGAGTCCCTTTCCTCCTTAACAAACC 324
Query 373 TGGATC-GGGCTATCACGTCAACGGCGAGCTTTACGCGGTTTCTCCTCGCGGTCTCTCTC 431
|||||| || | ||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 325 TGGATCAGGTC-ATCACGTTACCGGCGAGCTTTACGCGGTTTCTCCTCGCGGTCTCTCTC 383
Query 432 GTCTCGACGAGCTCGAAGGAATCAGTCGCGGTCATTACATCCGGCAACCGATACGTCTCG 491
||||||||||||||||||| || ||||||||||||||||||||||||| ||| |||||||
Sbjct 384 GTCTCGACGAGCTCGAAGGGATTAGTCGCGGTCATTACATCCGGCAACAGATCCGTCTCG 443
Query 492 CGGCGGCGGAGgaagaagaagaagaagaagGAGATCTGGAAACAGAGGCGCCGTCGTCGT 551
| ||||||||||| | ||| | | | ||| | | | || |||||||
Sbjct 444 CAGCGGCGGAGGATCT-G--GAA-AC-A-G-AGA-C-GT---CTT---CG---TCGTCGT 485
Query 552 GCGTGGTGGAGGCGTATTACGCTCATAAGAGTTATGAGGAAGAGCTGTGGAGGAGGAATA 611
|||||||||||||||||||||| |||||||| || |||||||||||||||| ||||||||
Sbjct 486 GCGTGGTGGAGGCGTATTACGCGCATAAGAGCTACGAGGAAGAGCTGTGGAAGAGGAATA 545
Query 612 GAGGAAGATCATTCGGCGCGTACACGGAAAACGAAGCGCGTGGATATGTGAAACGCAATG 671
|||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 546 GAGGAAGATCGTTCGGCGCGTATACGGAAAACGAAGCGCGTGGGTATGTGAAACGCAATG 605
Query 672 ATAGGCCTCAGCATCTTAGCTTCTTGGATCATATCCGTATTTTCGTATCTTCTCCATGTG 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 ATAGGCCTCAGCATCTTAGCTTCTTGGATCATATCCGTATTTTCGTATCTTCTCCATGTG 665
Query 732 ATTGATT 738
|||||||
Sbjct 666 ATTGATT 672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41287119111
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5