BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02920.2
Length=1262
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477538 jgi|Araly1|477538|fgenesh2_kg.3__239__AT3G02920.1 1284 0.0
> Ahg477538 jgi|Araly1|477538|fgenesh2_kg.3__239__AT3G02920.1
Length=1111
Score = 1284 bits (695), Expect = 0.0
Identities = 772/810 (95%), Gaps = 2/810 (0%)
Strand=Plus/Plus
Query 324 AACCGCGATGTACGTACCTTGCTTCCCCTGACACTGAAGCAGTTGAGCAGCGCATCAACC 383
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 240 AACCGCGATGTACGTACCTTGCTTCCCCTGACACTTAAGCAGTTGAGCAGCGCATCAACT 299
Query 384 ACTGGCGAATCAAATTTCTCTATTGATGGCGTTGATATTAAAACTGTTGTAATCGTTGGA 443
||||| ||||||||||||||||||||||||||||||||||| ||||||| || ||||||
Sbjct 300 ACTGGTGAATCAAATTTCTCTATTGATGGCGTTGATATTAATACTGTTGCCATTGTTGGA 359
Query 444 CGGATTTCTAGAATGGAGAACAGAATCACTCAGGTCGATTTTGTTGTTGATGACGGTACA 503
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGGATTTCTAGAATGGAGAACAGAATCACTCAGGTCGATTTTGTTGTTGATGACGGTACT 419
Query 504 GGCTGGGTTGATTGTGTCAGATGGTGTCACGCTCGGCAAGAAACTGAAGAAATGGAAGCA 563
||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||
Sbjct 420 GGCTGGGTTGATTGTGTCAGATGGTGTCACGAGCGTCAAGAAACCGAAGAAATGGAAGCA 479
Query 564 GTCAAGCTGGGAATGTATGTTCGCTTACATGGACACCTGAAAATTTTTCAAGGGAAACGA 623
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 480 GTCAAGCTGGGAATGTATGTTCGCTTACATGGACACCTGAAAATTTTTCAAGGGAAGCGA 539
Query 624 TCTGTGAATGTTTTTTCAGTCAGGCCTGTCACTGACTTCAATGAGATTGTACACCACTTT 683
|||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 TCTGTGAATGTTTTCTCAATCAGGCCTATCACTGACTTCAATGAGATTGTACACCACTTT 599
Query 684 ACCGAGTGTATGTATGTCCACATGTACAACACCAAGTTACGGGGTGGTTCTATTACTCAA 743
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 600 ACCGAGTGTATGTATGTCCACATGTACAACACCAAGTTACGGGGTGGCTCTATTACTCAG 659
Query 744 GATACTGCTACTCCTAGGCCCCAAATGCCATATTCAACAATGCCAACCCCTGCAAAGCCC 803
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GCTACTGCTACTCCTAGGCCCCAAATGCCATATTCAACAATGCCAACCCCTGCAAAGCCA 719
Query 804 TACCAAACCGGTCCATCTAATCAGTTCCCGAACCAATTCAATGATTCAATGCATGGTGTA 863
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 720 TACCAAACCGGTCCATCTAATCAGTTCCCGAACCAATTCAATGATCCAATGCATGGTGTA 779
Query 864 AAGCAGACGGTCTTGAATTACCTGAATCAACCTATGCACATTGTATCTGAAGCTGGAGTT 923
||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 780 AAGCAGAATGTCTTGAATTACCTGAATCAACCTATGCACCTTGTATCTGAAGCTGGTGTT 839
Query 924 CACTGTGATATAATTGCCCGTGAACTCAGGATTCCGCTGCTTCAAGTCAAGGAAGCGTTA 983
||||||||||||||||| ||||| |||||||||||||||| |||||||||||| ||||||
Sbjct 840 CACTGTGATATAATTGCGCGTGACCTCAGGATTCCGCTGCCTCAAGTCAAGGATGCGTTA 899
Query 984 GAACAGCTCTCAAACGATGGTTGCATATACTCGACTTTGGACGAGACATGCTTCAAATCG 1043
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 900 GAACAGCTCTCAAACGATGGTTGCATTTACTCGACTATGGACGAGACATGCTTCAAATCG 959
Query 1044 ACTGCTAACGCTTGATGAAAATTGATTTATATGTCAACACATATCAATCCTCCTCTCATG 1103
|| ||||||||||||||||||| ||||||| | ||| |||||||||||||||||||||||
Sbjct 960 ACGGCTAACGCTTGATGAAAATGGATTTAT-T-TCATCACATATCAATCCTCCTCTCATG 1017
Query 1104 TTCAAAAGTCTTTTGTATAGGCCCTAAGGT 1133
|||||||| ||||||||||| |||||||||
Sbjct 1018 TTCAAAAGCCTTTTGTATAGACCCTAAGGT 1047
Score = 324 bits (175), Expect = 1e-87
Identities = 227/250 (91%), Gaps = 11/250 (4%)
Strand=Plus/Plus
Query 14 AGAATAAGAAAAGTTGAAATTTGTAAAAGATATGAGAAATTAGTAAATTCCAGAAACTTA 73
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1 AGAATAAGAAAAGTTGAAATTTGTAAAAGATATGAGAATTTAGTAATTTCCAGAAACTTA 60
Query 74 TTAGAAGCGGCGGATCGAATTCGCGACGAGCGTTCCATTAGGGTTTCGAATCAACATCAA 133
|| ||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 61 TTCGAAGCGGTGGATCGAATTCACGACGAGCGTTCCATTAGGGTTTCGATTCAACATCAA 120
Query 134 CAAACGACGAGAGAAAACTTTTTAAAACATGTACGGAGGCGATTTTGACGGCAACGCTGC 193
||||||| |||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 121 CAAACGA-GAGAGAAAAC-----A-----TGTACGGAGGCGAGTTTGACGGCAACGCTGC 169
Query 194 TTTCGCCGGCGGCGGCTTCATGCCTTCTCAGGCGACTACGCAAGCCCATGAATCCTCATC 253
||||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 170 TTTCGCCGGCGGCGGTTTCATGCCTTCTCAGGCAACTACGCAAGCGCATGACTCCTCATC 229
Query 254 TTCCCTCAAG 263
|||||||||
Sbjct 230 GTCCCTCAAG 239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47158048329
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5