BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02930.1
Length=2421
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927786 jgi|Araly1|927786|scaffold_300243.1 1694 0.0
Ahg488531 jgi|Araly1|488531|fgenesh2_kg.6__1665__AT5G16730.1 1472 0.0
> Ahg927786 jgi|Araly1|927786|scaffold_300243.1
Length=2074
Score = 1694 bits (917), Expect = 0.0
Identities = 1058/1123 (94%), Gaps = 21/1123 (2%)
Strand=Plus/Plus
Query 1317 AGAACTGGAGAGCTCGAAGGAGGAAGAGGAGAAGAGTAAGAAAGCAATGGAGAGTTTAGC 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935 AGAACTGGAGAGCTCGAAGGAGGAAGAGGAGAAGAGTAAGAAAGCAATGGAGAGTTTAGC 994
Query 1377 TTCAGCATTGCACGAAGTGTCAAGTGAATCACGTGAGTTGAAAGAAAAATTGCTGAGTCG 1436
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 995 TTCAGCATTGCACGAAGTGTCGAGTGAATCACGCGAGTTGAAAGAAAAATTGCTGAGTC- 1053
Query 1437 A-GGTGATCAAAATTATGAAACACAGATAGAAGATCTGAAGTTGGTGATTAAAGCAACGA 1495
| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1054 AGGGTGATCAGGATTATGAAACACAGATAGAAGATCTGAAGTTGGTCATTAAAGCAACGA 1113
Query 1496 ACAACAAGTACGAGAACATGCTTGACGAGGCGAGACATGAGATCGATGTTCTTGTCAATG 1555
|||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1114 ACAAGAAGTATGAGAATATGCTTGATGAGGCGAGACATGAGATCGATGTTCTTGTCAATG 1173
Query 1556 CGGTAGAACAAACCAAGAAACAGTTTGAGAGCGCAATGGTAGATTGGGAGATGAGAGAAG 1615
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1174 CGGTAGAACAAACCAAGAAACAGTTCGAAAGCGCAATGGTAGATTGGGAGATGAGAGAAG 1233
Query 1616 CCGGTTTGGTGAATCACGTGAAGGAATTTGATGAAGAAGTTTCTTCAATGGGGAAAGAAA 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 CCGGTTTGGTGAATCACGTGAAGGAATTTGATGAAGAAGTTTCTTCAATGGGGAAAGAAA 1293
Query 1676 TGAATAGGTTGGGCAATTTGGTTAAAAGGACAAAGGAAGAAGCTGATGCATCATGGGAAA 1735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1294 TGAATAGGTTGGGCAATTTGGTTAAAAGGACAAAGGAAGAAGCTGATGCATCATGGGAAA 1353
Query 1736 AAGAATCCCAAATGAGAGATTGTCTTAAAGAAGTGGAAGATGAGGTGATTTATCTTCAGG 1795
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1354 AAGAATCCCAAATGAGAGATAGCCTTAAAGAAGTGGAAGATGAGGTGATTTATCTTCAGG 1413
Query 1796 AAACTCTCAGGGAAGCGAAAGCTGAAACCTTGAAACTAAAGGGGAAGATGTTGGATAAAG 1855
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1414 AAACTCTCAGGGAAGCGAAAGCTGAAACTTTGAAACTAAAGGGGAAAATGTTGGATAAAG 1473
Query 1856 AAACTGAGTTTCAAAGCATTGTTCATGAGAACGATGAACTCAGAGTGAAACAGGATGATT 1915
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1474 AAACTGAGTTTCAAAGCGTTGTTCATGAGAACGATGAACTCAGAGTGAAACAGGATGATT 1533
Query 1916 CTCTGAAGAAGATCAAGGAACTATCGGAGTTACTCGAAGAAGCATTGGCCAAGAAACATA 1975
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1534 CTCTGAAGAAGATCAAGGAGCTATCGGAGTTACTCGAAGAAGCATTAGCCAAGAAACATA 1593
Query 1976 TTGAAGAGAACGGTGAGCTCAGTGAGAGTGAAAAAGACTATGATTTGCTGCCAAAGGTGG 2035
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1594 CAGAAGAGGACGGTGAGCTCAGTGAGAGTGAAAAAGACTATGATTTGCTTCCAAAGGTGG 1653
Query 2036 TTGAGTTTTCTGAGGAAAATGGTTATAGAAGTGCAGAAGAGAAGTCTTCTAAAGTAGAGA 2095
| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
Sbjct 1654 TCGAGTTTTCTGAGGAAAATGGTTATAGAAATGCAGAAGAGAAGTCTTCTAAAGTAAAAA 1713
Query 2096 CCCTCGATGGCATGAACATGAAACTTGAGGAGGACACCGAGAAGAAGGAAAAGAAAGAAC 2155
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1714 CCCTCGATGGCATGAACATGAAACTTGAGGAGGACATTGAGAAGAAGGAAAAGAAAGAAC 1773
Query 2156 GTTCTCCAGAGGATGAGACAGTTGAAGTTGAATTCAAAATGTGGGAAAGTTGTCAGATTG 2215
||| || || |||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1774 ATTCCCCGGATGATGAGACAGTTGAAGTTGAGTTTAAAATGTGGGAAAGTTGTCAGATTG 1833
Query 2216 AGAAGAAAGAAGTTTTTCATAA---A------GA----G--TCTGCAAAAGAAGAAGAGG 2260
|||||||||||||||| || || | || | ||||||||||||| |||||
Sbjct 1834 AGAAGAAAGAAGTTTTCCACAAGGGAAAACCAGAACAAGAGTCTGCAAAAGAAGTAGAGG 1893
Query 2261 AAGACTTAAATGTGGTGGACCAAAGCCAGAAAACCTCGCCAGTAAATGGATTAACCGGAG 2320
|||||||||| ||| | ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1894 AAGACTTAAACGTGATAGACCAAAGCCAGAAAACCTCGCCTGTAAATGGATTAACCGGAG 1953
Query 2321 AAGATGAGCTGTTgaaagagaa-ag-agaagaagaagaagaagaCATTGTTTGGTAAAGT 2378
||||||| ||| |||| | ||| || | ||||||||||||||||||||||||||||||||
Sbjct 1954 AAGATGAACTGGTGAA-G-GAACAGGAAAAGAAGAAGAAGAAGACATTGTTTGGTAAAGT 2011
Query 2379 TGGGAATCTTCTCAAGAAGAAAGGACCCGTGAATCAGAAATAA 2421
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 2012 TGGGAATCTTCTCAAGAAGAAAGGACCCGTGAATCAGAAATAA 2054
Score = 1330 bits (720), Expect = 0.0
Identities = 851/915 (93%), Gaps = 6/915 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCTAAGATTAAAAA-TGGTTTATCTGACACTACTTTGAGG-AAATCATCTTCAA 58
|||||||| |||| |||||| |||||||||||| || |||||| || ||||||| | ||
Sbjct 21 ATGGCTTCCAAGA-TAAAAACTGGTTTATCTGAAACCACTTTG-GGAAAATCATGTCCAG 78
Query 59 CATCTCTAAGAGTGCCTAGACTCACTCGGATTGTGACTAAACCTGATTCTAATTCTCCTT 118
|||||||||||||||||||||| |||||||| |||||||||||||| |||| ||||||||
Sbjct 79 CATCTCTAAGAGTGCCTAGACTTACTCGGATAGTGACTAAACCTGAATCTACTTCTCCTT 138
Query 119 CACCGACTCAACAACAGTCACGGCTTTCGTTCGAGCGCCCTTCTTCTAACTCAAAGCCTA 178
|||||||||||||||||||||| ||||| ||||||||| |||||||||| |||||||||
Sbjct 139 CACCGACTCAACAACAGTCACGTCTTTCCTTCGAGCGCTCTTCTTCTAATTCAAAGCCTT 198
Query 179 GTACTGATAAGAGGTCCCCCAAAGCTCCAACCCCACCAGAAAAAACTCAAATACGGGCTG 238
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 199 CTACTGATAAGAGGTCCCCCAAAGCTCGAACCCCACCAGAAAAAACTCAAATACGGGCTG 258
Query 239 TGAGAGTATCAGAATCGCAACCTCAGTCAGTTCAAATCAAGGAAGATTTAAAGAAAGCCA 298
||| || ||||||| | ||||||| |||||||||||||||||||||||| | ||||||||
Sbjct 259 TGAAAGGATCAGAAACACAACCTCGGTCAGTTCAAATCAAGGAAGATTTGAGGAAAGCCA 318
Query 299 ATGAGCTGATAGCATCGCTCGAGAATGAAAAAGCTAAAGCACTTGATCAACTTAAAGAAG 358
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 319 ATGAGCTGATAGCATCGCTTGAGAATGAGAAAGCTAAAGCACTTGATCAACTTAAAGAAG 378
Query 359 CGCGGAAAGAAGCTGAAGAGGCATCTGAGAAACTAGATGAGGCTTTAGAA-GCTCAGAAA 417
|||||||||||||||||||||||||||| || |||||||||||| || || || ||||||
Sbjct 379 CGCGGAAAGAAGCTGAAGAGGCATCTGACAAGCTAGATGAGGCTGTA-AATGCGCAGAAA 437
Query 418 AAGTCCCTGGAGAACTTCGAAATTGAGAAATTTGAGGTTGTTGAGGCAGGGATAGAGGCG 477
||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 438 AAGGCCCAAGAGAACTTTGAAATTGAGAAATTTGAGGTTGTTGAGGCGGGGATAGAGGCG 497
Query 478 GTTCagagaaaagaagaagagttgaagaaagaactagagaatgtcaagaaCCAACATGCT 537
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 498 GTTCAGAGGAAAGAAGAAGAATTGAAGAAAGAACTAGAGAATGTCAAGAACCAACATGCT 557
Query 538 TCAGAATCAGCTACTCTTCTTTTGGTAACACAGGAGCTGGAGAATGTCAATCAAGAATTG 597
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 558 TCAGAATCAGCTACTCTTCTTTTGGTAACCCGGGAGCTGGAGAATGTCAATCAAGAATTG 617
Query 598 GCTAATGCTAAAGATGCCAAGAGTAAGGCTTTGTGTCGTGCAGATGATGCTAGTAAGATG 657
||| ||||||| || |||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 618 GCTTATGCTAATGACGCCAAGAGTAAGGCTTTGAGTCATGCAGATGATGCTAGTAAGATG 677
Query 658 GCTGCAATTCATGCAGAGAAAGTTGAAATCTTGTCGTCAGAGTTAATACGGTTGAAGGCT 717
| ||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 678 GTTGCAATTCATGCAGAGAAAGTGGAAATCTTGTCATCAGAGTTAATCCGGTTGAAGGCT 737
Query 718 TTGCTTGATTCAACTCGAGAGAAGGAAATCATCTCCAAGAATGAGATTGCTTTAAAGCTA 777
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||
Sbjct 738 TTGCTTGATTCAACTCGAGAGAAGGAAACCATCTCCAAGAATGAGATTGCTTCAAAACTA 797
Query 778 GGGGCGGAGATAGTGGATCTAAAAAGAGACCTTGAGAATGCGAGAAGTTTGGAAGCAAAG 837
|| || |||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 798 GGAGCCGAGATAGTGGATCTAAAAAGAGACCTTGAGAAAGCGACAAGTTTGGAAGCAAAG 857
Query 838 GTCAAGGAACTAGAGATGATCATTGAGCAGCTTAATGTTGACTTAGAAGCTGCAAAAATG 897
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 858 GTCAAGGAACTAGAGATGATCATTGAGCAGCTTAATGTTGACTTAGAAGCTGCGAAGATG 917
Query 898 GCAGAATCTTATGCG 912
|||| ||||||||||
Sbjct 918 GCAGGATCTTATGCG 932
> Ahg488531 jgi|Araly1|488531|fgenesh2_kg.6__1665__AT5G16730.1
Length=2745
Score = 1472 bits (797), Expect = 0.0
Identities = 1576/1946 (81%), Gaps = 77/1946 (4%)
Strand=Plus/Plus
Query 197 CCAAAGC-TCCAACCCCACCAGAAAAAACTCAAATAC-GG--GCTGTGAGAGTATCAGAA 252
||||||| |||||| || || || ||||||||| | || || |||| || | |||||
Sbjct 426 CCAAAGCTTCCAACTCCTCCTGAGAAAACTCAAGCGCGGGTAGCGGTGAAAGGAACAGAA 485
Query 253 T---CGCA-ACCTCAG-TCAGTTCAAATCAAGGAAGATTTAAAGAAAGCCAATGAGCTGA 307
| |||| ||| | | | || |||||||||||||||||| |||||||| ||||||| ||
Sbjct 486 TCACCGCAGACC-CGGTTGAG-TCAAATCAAGGAAGATTTCAAGAAAGCTAATGAGCGGA 543
Query 308 -TAGCATCGCTCGAGAATGAAAAAGCTAAAGCACTTGATCAACTTAAAGAAGCGC-GGAA 365
|| | || | ||||| || |||||||||||||||||| |||| ||| |||| | ||
Sbjct 544 TTA-CTTCATTGGAGAAGGATAAAGCTAAAGCACTTGATGAACTCAAACAAGC-CAAAAA 601
Query 366 AGAAGCTGAAGAGGC-ATCTGAGAAACTAGATGAGGCTTTAG-AAGCTCAGAAA-AAGTC 422
|||||||||||| || | ||| ||| || | ||| ||||| | ||||||||||| | ||
Sbjct 602 AGAAGCTGAAGAAGCGA-CTGTGAAGCTGGTTGATGCTTT-GAAAGCTCAGAAACATGT- 658
Query 423 CCTGGAGAACTTC-GAAATTGAGAAATTTGAGGTTGTTGAGGCAGGGATAGAGGCGGTTC 481
|||||| ||| || |||||||| ||| ||| ||||||||| ||||| ||||| ||||
Sbjct 659 AGAGGAGAA-TTCTGAGATTGAGAAGTTTCAGGCTGTTGAGGCGGGGATCGAGGCAGTTC 717
Query 482 agaga-aaagaagaagagttgaagaaagaactagagaatgtcaagaaCCAACATGCTTCA 540
||| | || |||||||| ||||||||||||||||||| ||| |||||||||||||| |||
Sbjct 718 AGA-ACAATGAAGAAGAATTGAAGAAAGAACTAGAGAGTGTTAAGAACCAACATGCATCA 776
Query 541 GAATCAGCTACTCTTCTTTTGGTAACACAGGAGCTGGAGAATGTCAATCAAGAATTGGCT 600
|| |||||| ||||| ||| || | || |||||| ||||| ||||| ||||||||| |
Sbjct 777 GATTCAGCTGCTCTTGTTTCCGTTAGACTGGAGCTTGAGAAAATCAATGAAGAATTGGTT 836
Query 601 AATGCTAAAGATGCCAAGA-GTAAGGCTTTGTGTCGTGCAGATGATGCTAGTAAGATGGC 659
|| || ||||| |||| | ||||| ||| | | ||||||||||||||||||| |||
Sbjct 837 GCGGCCAATGATGCTAAGACG-AAGGCCTTGAGCCAAGCAGATGATGCTAGTAAGACGGC 895
Query 660 TGCA-ATTCATGCAGAGAAAGTTGAAATCTTGTCGTCAGAGTTAATACGGTTGAAGGCTT 718
|| | |||||||| ||||||||||| |||||||| || ||||| || ||||| ||||
Sbjct 896 TG-ATATTCATGCGGAGAAAGTTGACATCTTGTCTTCGGAGTTGGCGCGCTTGAAAGCTT 954
Query 719 TGCTTGATTCAACTCGAGAGAAGGAAAT--CATCTCCAAG-AATGAGATTGCTT-TAAAG 774
||||||||||||| ||||| || | | | ||| | | | || |||| || || |||
Sbjct 955 TGCTTGATTCAACCCGAGA-AAAG-ACTGCCATAT-CGGGCAACGAGA-TGGTTGCCAAG 1010
Query 775 CTAG-GGGCGGAGATAGTGGATCTAAAAAGAGACCTTGAGAATGCGAGAAGTTTGGAA-G 832
|||| | | ||||| |||| | | |||||||| |||||||| |||||| |||| || |
Sbjct 1011 CTAGAAGAC-GAGATTGTGGTTTTGAAAAGAGATCTTGAGAAAGCGAGAGGTTT-CAAGG 1068
Query 833 CAAAGGTCAAGGAACTAGAGATGATCATTGAGCAGCTTAATGTTGACTTAGAAGCTGCAA 892
|| |||| || ||| |||| ||||||| ||| |||||||||||||| | |||||| | |
Sbjct 1069 CAGAGGTTAAAGAAAAAGAGGTGATCATCGAGAAGCTTAATGTTGACCTCGAAGCTTCGA 1128
Query 893 AAATGGCAGAATCTTATGCGCATGGCTTTG-CTGACGAGTGGCAAAACAAAGCGAAAGAA 951
| |||||||| | |||||| || | ||| ||||||||||||| | |||||| ||||||
Sbjct 1129 AGATGGCAGAGTTTTATGCACACAAC-TTGTCTGACGAGTGGCAGAGCAAAGCCAAAGAA 1187
Query 952 CTGGAGAAACGGTTGGAAGAAGCTAACAAGCTGGAGAAATGTGCTTCGGTATCTCTGGTA 1011
|||||| ||| | | ||||||||||||||| |||||| || |||||| |||||| ||| |
Sbjct 1188 CTGGAGGAACAGCTAGAAGAAGCTAACAAGTTGGAGAGATCTGCTTCTGTATCTTTGGAA 1247
Query 1012 TCTGTGA-CAAAGCAGCTGGAAGTAAGCAATAG-TAGATTGCACGATATGGAATCTGAAA 1069
||||||| ||| ||||| |||| ||||||| | || |||||| ||||||||| ||||||
Sbjct 1248 TCTGTGATGAAA-CAGCTTGAAGGAAGCAAT-GATAAATTGCATGATATGGAAACTGAAA 1305
Query 1070 TTACTGATCTTAAGGAGAAAATTGAGTTATTGGAGATGACAGTTGCTAGTCAAAAGGTTG 1129
| |||||||||||||||||||| | | |||||||| |||| |||||| ||||||| |
Sbjct 1306 TCACTGATCTTAAGGAGAAAATCGTGACATTGGAGACGACAATTGCTAAACAAAAGGAGG 1365
Query 1130 ATCTTGAGAAATCTGAACAGAA--GCTAGGTATTGCAGAAGAAGAATCATCTAAGAGTGA 1187
|||| ||| |||||| | | || | | || | |||||||||||||| |||||||| |||
Sbjct 1366 ATCTCGAGGAATCTG-AGA-AACGGTTGGGCAGTGCAGAAGAAGAATTATCTAAGACTGA 1423
Query 1188 AAAAGAAGCAGAGAAAC-TGAAGAATGAGCTTGAAACTGTGAATGAAGAGAAAACCCAGG 1246
|||||||| |||| ||| |||||| ||||||||||||| |||| || ||||||| | ||
Sbjct 1424 AAAAGAAGTAGAG-AACTTGAAGAGTGAGCTTGAAACTTTGAAGGAGGAGAAAAATCGGG 1482
Query 1247 CTTTAAAGAAGGAGCAAGATGCTACTTCAAGTGTGCAAAGGCTCTTGGAAGaaaaaaaG- 1305
||||||||||||||||||||||||||||||| || |||||||||| ||||| | |||||
Sbjct 1483 CTTTAAAGAAGGAGCAAGATGCTACTTCAAGAGTTCAAAGGCTCTCGGAAG-AGAAAAGC 1541
Query 1306 AAGATCTTGTCAGAACTGGAGAGCTCGAAGGAGGAAGAGGAGAAGAGTAAGAAAGCAATG 1365
||| |||| ||||| || |||||||| || |||||||||||||||||||||||||| |||
Sbjct 1542 AAGCTCTTATCAGATCTAGAGAGCTCAAAAGAGGAAGAGGAGAAGAGTAAGAAAGCGATG 1601
Query 1366 GAGAGTTTAGCTTCAGCAT-TGCACGAAGTGTCAAGTGAATCACGTGAGTTGAAAGAAAA 1424
|||||||||||||| || | ||||||||||||| |||||| | | ||||||||||| ||
Sbjct 1602 GAGAGTTTAGCTTCGGC-TCTGCACGAAGTGTCGAGTGAAGGAAGGGAGTTGAAAGAGAA 1660
Query 1425 ATTGCTGAGTCGAGGTGATCAAAATTATGAAACACAGATAGAAGATC-TGAAGTTGGTGA 1483
||| |||||| ||| ||||| | |||||| |||| |||||||| | | |||||||| |
Sbjct 1661 GTTGTTGAGTCAAGGCGATCACGAGTATGAATCACAAATAGAAGA-CTTAAAGTTGGTTA 1719
Query 1484 TTAAAGCAACGAACAACAAGTACGAGAACATGCTTGACGAGGCGAGACATGAGATCGATG 1543
||||||| |||||| | ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1720 TTAAAGCGACGAACGAGAAGTATGAGAATATGCTTGACGAGGCGAGACATGAGATCGATG 1779
Query 1544 TTCTTGTCAATGCGGTAGAACAAACCAAGAAACAGTTT-GAGAGCGCAATGGTAGATTGG 1602
||||||| | ||||| ||||||||||||||||| ||| |||||| ||| | ||||||
Sbjct 1780 TTCTTGTTAGCGCGGTCGAACAAACCAAGAAACA-TTTCGAGAGCTCAAAGACGGATTGG 1838
Query 1603 GAGATGAGAGAAGCCGGTTTGGTGAATCACGTGAAGGAATTTGATGAAGAAGTTTCTTCA 1662
||||||| ||||||| |||||||||| |||||||| || | || ||||| ||| ||||
Sbjct 1839 GAGATGAAAGAAGCCAATTTGGTGAATTACGTGAAGAAAATGGAAGAAGACGTTGCTTCG 1898
Query 1663 ATGGGGAAAGAAATGAATAGGTTGGGCAATTTGGTTAAAAGGACAAAGGAAGAAGCTGAT 1722
|||||||| |||||||||||| | | ||| || | || || || |||||||||| |||
Sbjct 1899 ATGGGGAAGGAAATGAATAGGCTAGATAATCTGCTGAAGAGAACCGAGGAAGAAGCCGAT 1958
Query 1723 GCATCATGGGAA-AAAGAATCCCAAATGAGAGATTGTCTTAAA-GAAGTGGAAGATGAGG 1780
||| | ||| || |||||| |||| | || ||| || ||||| ||||||||||| ||||
Sbjct 1959 GCAGCTTGG-AAGAAAGAAGCCCAGACGAAAGACAGT-TTAAAAGAAGTGGAAGAAGAGG 2016
Query 1781 T-GATTTATCTTCAGGAAACTCTCAGGGAAGCGAAAGCTGAAACCTTGAAACTAAAGGGG 1839
| | |||||||||||||||||||| ||||||| ||||| |||| | |||| ||||||| |
Sbjct 2017 TCG-TTTATCTTCAGGAAACTCTCGGGGAAGCAAAAGCCGAAAGCATGAAGCTAAAGGAG 2075
Query 1840 AAGATGTTGGATAAAGAAACTGAGTTTCAAAGCATTGTTCATGAGAACGATGAACTCAGA 1899
|| ||||||||||||||||||||||||||| | | |||| || ||||| || || ||
Sbjct 2076 AATCTGTTGGATAAAGAAACTGAGTTTCAAAACGTCATTCACGAAAACGAGGATCTGAGG 2135
Query 1900 GTGAAACAGGATGATTC-TCTGAAGAAGATCAAGGAACTATCGGAGTTACTCGAAGAAGC 1958
| ||| |||||| ||| | ||||||||||| |||| |||| |||||||||| |||||
Sbjct 2136 GCGAAGGAGGATGTTTCGT-TGAAGAAGATCGAGGAGTTATCAAAGTTACTCGAGGAAGC 2194
Query 1959 A-T-T-GGCCAAGAAACATAT-TGAAGA-GA-AC-GGTGAGCTCAGTGAGAGTGAAAAAG 2011
| | | ||||||||| || | |||||| || | || |||||||||||||| |||||||
Sbjct 2195 AATATTGGCCAAGAAGCA-ACCTGAAGAAGAGAATGGCGAGCTCAGTGAGAGCGAAAAAG 2253
Query 2012 ACTATGATTTGCTGCCAAAGGTGGTTGAGTTTTCTGAGGAAAATGGTTATAGAAGTGCAG 2071
||||||||||||| ||||| ||||||||||||||| || || ||| ||||||||| ||
Sbjct 2254 ACTATGATTTGCTACCAAAAGTGGTTGAGTTTTCTTCTGAGAACGGTCATAGAAGTGTAG 2313
Query 2072 AAGAGAAGTCTTCTAAAGTAGAGACC 2097
||||||| ||| ||||||| || |||
Sbjct 2314 AAGAGAAATCTCCTAAAGTCGAAACC 2339
Score = 86.1 bits (46), Expect = 1e-15
Identities = 82/99 (83%), Gaps = 4/99 (4%)
Strand=Plus/Plus
Query 2311 TTAACCGGAGAAGATGAGCTGT-Tgaaagagaaag-agaagaagaagaagaagaCATTGT 2368
||||||| ||||| |||| | ||| ||| ||| ||| ||||| |||||||| ||
Sbjct 2610 TTAACCGCCGAAGACCAGCT-TATGATGGAG-AAGAAGATCAAGAAAAAGAAGACTTTAC 2667
Query 2369 TTGGTAAAGTTGGGAATCTTCTCAAGAAGAAAGGACCCG 2407
||||||||||||||||||||||||||||||||| |||||
Sbjct 2668 TTGGTAAAGTTGGGAATCTTCTCAAGAAGAAAGCACCCG 2706
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91226136775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5