BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02940.1
Length=1231
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477540 jgi|Araly1|477540|fgenesh2_kg.3__241__AT3G02940.1 1903 0.0
Ahg488535 jgi|Araly1|488535|fgenesh2_kg.6__1669__AT5G16770.1 599 2e-170
> Ahg477540 jgi|Araly1|477540|fgenesh2_kg.3__241__AT3G02940.1
Length=1217
Score = 1903 bits (1030), Expect = 0.0
Identities = 1162/1222 (95%), Gaps = 24/1222 (2%)
Strand=Plus/Plus
Query 1 AACTAAGATCTTGCCTTCACCATTTTTCTCTCTTCTCGATTATATCTCTAACCTCAAAGG 60
|||||||||||||| ||| ||| |||||||||||||| ||||| ||||| ||||||||||
Sbjct 1 AACTAAGATCTTGCATTCGCCA-TTTTCTCTCTTCTCAATTATCTCTCT-ACCTCAAAGG 58
Query 61 --TACATTTAATAGCTAGATGTTATAACAAAATGGGGAGATCACCGTGTTGCGATGAGAG 118
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 TATATATTTAATAACTAGATGTTATAACAAAATGGGGAGATCACCGTGTTGCGATGAGAG 118
Query 119 CGGATTAAAGAAAGGGCCATGGACGCCAGAAGAAGATCAGAAACTGATAAATCACATAAG 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 TGGATTAAAGAAAGGGCCATGGACGCCAGAAGAAGATCAGAAACTGATAAATCACATAAG 178
Query 179 AAAACACGGCCATGGAAGCTGGAGAGCTCTACCCAAGCAAGCCGGTTTAAACCGGTGTGG 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AAAACACGGCCATGGAAGCTGGAGAGCTCTACCCAAGCAAGCCGGTTTAAACCGGTGTGG 238
Query 239 GAAGAGTTGCAGATTGAGATGGACTAATTACTTGAGACCAGATATCAAAAGAGGAAACTT 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GAAGAGTTGCAGATTGAGATGGACTAATTACTTGAGACCAGATATCAAAAGAGGAAACTT 298
Query 299 CACAGCTGAGGAAGAACAAACTATCATTAACCTTCATTCTCTTCTTGGGAACAAGTGGTC 358
||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 299 CACAGCTGAGGAAGAGCAAACCATCATCAACCTTCATTCTCTTCTTGGGAACAAGTGGTC 358
Query 359 GTCTATAGCTGGTCATCTCCCAGGAAGAACGGATAACGAAATAAAGAACTATTGGAACAC 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GTCTATAGCTGGTCATCTCCCAGGAAGAACGGATAACGAAATAAAGAACTATTGGAACAC 418
Query 419 GCATATTAGAAAGAAACTTATTCAGATGGGAATCGATCCGGTGACCCATAGGCCAAGAAC 478
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 419 GCATATTAGAAAGAAACTTATTCAGATGGGGATCGATCCCGTGACCCATAGGCCAAGAAC 478
Query 479 CGACCATCTAAACGTTCTAGCCGCTCTCCCGCAACTACTAGCTGCCGCAAATTTCAACAA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CGACCATCTAAACGTTCTAGCCGCTCTCCCGCAACTACTAGCTGCCGCAAATTTCAACAA 538
Query 539 CCTCTTGAATCTAAATCAAAATATACAA-TTGGATGCAACAAGTGTTGCGAAAGCCCAAC 597
|||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||
Sbjct 539 CCTCTTGAATCTAAATCAAAATATACAACTTG-ATGCAACAAGTGTTGCAAAAGCCCAAT 597
Query 598 TGTTACATAGTATGATTCAAGTCCTTAGCAACAACAATACCTCTTCTTCCTTTGACATTC 657
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 598 TGTTACATAGTATGATTCAAGTCCTTAGCAGCAACAATACCTCTTCTTCTTTTGACATTC 657
Query 658 ATCACAC-AACCAATAATCTCTTTGGCCAATCTTCTTTCTTAGAGAACCTACCAAATATT 716
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 ATCACACCAAC-AATAATCTCTTTGGCCAATCTTCTTTCTTAGAGAACCTACCAAATATT 716
Query 717 -G--AAAATCCTTATGATCAAACCCAAGGCCTCTCTCACATTGACGATCAGCCTCTGGAT 773
| ||||||||||||||||||||||| ||||||||||||| ||| ||||| ||||||||
Sbjct 717 AGTGAAAATCCTTATGATCAAACCCAAAGCCTCTCTCACATCGACAATCAGTCTCTGGAT 776
Query 774 TCGTTTTCTAGCCCGATTCGAGTAGTTGCTTATCAACATGATCAGAATTTTATTCCGCCC 833
||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||
Sbjct 777 CCGTTTTCTAGCCCGATTCGAGTAGTTGCTCATCAACTTGATCAGAATTTGATTCCGCCC 836
Query 834 TTGATTTCGACATCTCCTGATGAGTCTAAGGAAACCCAAATGATGGTCAAGAACAAGGAA 893
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 TTGATTTCGGCATCCCCTGATGAGTCTAAGGAAACCCAAATGATGGTCAAGAACAAGGAA 896
Query 894 ATCATGAAGTATAATGATCATACTTCAAACCCTTCGTCGACCTCAACTTTTACACAAGAT 953
||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 897 ATCATGAAGCATAATGATCATACTTCAAACCCTTCGTCGACCTCAACGTTCACACAAGAT 956
Query 954 CACCAGCCATGGTGTGACATAATTGATGATGAAGCAAGTGATTCTTATTGGAAAGAGATC 1013
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 CATCAGCCATGGTGTGACATAATTGATGATGAAGCAAGTGATTCTTATTGGAAAGAGATC 1016
Query 1014 ATAGAGCAAACTTGTTCGGAGCCTTGGCCATTTCGTGAATAGAGATGAAAGTAAAACATT 1073
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1017 ATAGAGCAAACTTGTTCGGAGCCTTGGCCATTTCGTGAATAGAGATGAAAGAAAAACATT 1076
Query 1074 AGTCTTAtttttttCTGTGGATATA--------GATATATACATATACGTTGTTAATTAA 1125
||||||||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 1077 AGTCTTATTTTTT-CTGTGGATATACTTATATAGATATATACATATATGTTGTTAATTAA 1135
Query 1126 CTTTCATACAATTTGTGTCTTAATTATTTTCCAACCATGTATACAAA-CACATTGAT-A- 1182
|||||||||| ||||||||||||||||||| | ||||| |||||||| ||||||||| |
Sbjct 1136 CTTTCATACAGTTTGTGTCTTAATTATTTTTCGACCATATATACAAAACACATTGATCAT 1195
Query 1183 -CTGTACAAAACTGATTATCAT 1203
|||||||||||||||||||||
Sbjct 1196 ACTGTACAAAACTGATTATCAT 1217
> Ahg488535 jgi|Araly1|488535|fgenesh2_kg.6__1669__AT5G16770.1
Length=1248
Score = 599 bits (324), Expect = 2e-170
Identities = 533/632 (84%), Gaps = 21/632 (3%)
Strand=Plus/Plus
Query 89 AATGGGGAGATCACCGTGTTGCGATGAGAGCGGAT-TAAAGAAAGGGCCATGGACGCCAG 147
||||||| | ||||| ||||||||||||| || | ||||||||||||||||||| | ||
Sbjct 63 AATGGGGCGTTCACCATGTTGCGATGAGAATGG-TCTAAAGAAAGGGCCATGGACACAAG 121
Query 148 AAGAAGATCAGAAACTGATAAATCACA-TAAGAAAACACGGCCATGGAAGCTGGAGAGCT 206
| || ||| |||||||||| |||||| | | || ||| |||||||| ||||||||||||
Sbjct 122 AGGAGGATGAGAAACTGATTGATCACATTCA-AACACATGGCCATGGCAGCTGGAGAGCT 180
Query 207 CTACCCAAGCAAGCCGGTTTAAACCGGTGTGGGAAGAGTTGCAGATTGAGATGGACTAAT 266
|| || |||||||||||||||||||| || || |||||||| |||||||||||||||||
Sbjct 181 CTTCCGAAGCAAGCCGGTTTAAACCGATGCGGAAAGAGTTGTAGATTGAGATGGACTAAC 240
Query 267 TACTTGAGACCAGATATCAAAAGAGGAAACTTCACAGCTGAGGAAGAACAAACTATCATT 326
||||||||||| || ||||| |||||||| ||||| | |||||||||||||| || ||
Sbjct 241 TACTTGAGACCTGACATCAAGAGAGGAAATTTCACTGAAGAGGAAGAACAAACAATTATC 300
Query 327 AACCTTCATTCTCTTCTTGGGAACAAGTGGTCGTCTATAGCTGGTCATCTCCCAGGAAGA 386
||||| ||||| |||||||| |||||||||||||| ||||| ||| |||| || ||||||
Sbjct 301 AACCTCCATTCCCTTCTTGGAAACAAGTGGTCGTCGATAGCCGGTAATCTTCCTGGAAGA 360
Query 387 ACGGATAACGAAATAAAGAACTATTGGAACACGCATATT-AGAAAGAAACTTATTCAGAT 445
||||| || |||||||| |||||||||||||| ||| || |||||||||||| | || ||
Sbjct 361 ACGGACAATGAAATAAAAAACTATTGGAACACACAT-TTGAGAAAGAAACTTCTCCAAAT 419
Query 446 GGGAATCGATCCGGTGACCCATAGGCCAAGAACCGACCATCTAAACGTTCTAGCCGCTCT 505
||| || |||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 420 GGGGATTGATCCGGTGACCCATAGGCCAAGAACCGACCATCTAAACGTTTTAGCTGCTCT 479
Query 506 CCCGCAACT-ACTAGCTGCCGCAAATTTCAACAACCTCTTGAATCTAAATCAAAATATAC 564
|||||| || | |||| |||||||||||||||| |||||||||||| |||||||| | |
Sbjct 480 CCCGCAGCTTA-TAGCCGCCGCAAATTTCAACAGCCTCTTGAATCTCAATCAAAACGTGC 538
Query 565 AATTGGATGCAACAAGTGTTGCGAAAGCCCAACTGTTACATAGTATGATTCAAGTCCTTA 624
|| |||||||||||| | |||| ||||| ||||| ||||| | ||||||||||||||||
Sbjct 539 AAGTGGATGCAACAACTCTTGCTAAAGCTCAACTTTTACACACTATGATTCAAGTCCTTG 598
Query 625 GCAACAA---CAATACCTCTTCTTCCTTTGACATTCATCA-C-A--CAAC-CAATA--A- 673
||| ||| ||| ||| | |||| ||| | ||||||| | | ||| || || |
Sbjct 599 GCACCAATAACAACACCAATCCTTCTTTTT-C-TTCATCAACTATGCAAAACAGTAGCAA 656
Query 674 TCTCTTTGGCCAATCTTCTTTCTTAGAGAACC 705
|||||||||||||||||||| |||||||||||
Sbjct 657 TCTCTTTGGCCAATCTTCTTACTTAGAGAACC 688
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45976237902
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5