BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G02940.1 Length=1231 Score E Sequences producing significant alignments: (Bits) Value Ahg477540 jgi|Araly1|477540|fgenesh2_kg.3__241__AT3G02940.1 1903 0.0 Ahg488535 jgi|Araly1|488535|fgenesh2_kg.6__1669__AT5G16770.1 599 2e-170 > Ahg477540 jgi|Araly1|477540|fgenesh2_kg.3__241__AT3G02940.1 Length=1217 Score = 1903 bits (1030), Expect = 0.0 Identities = 1162/1222 (95%), Gaps = 24/1222 (2%) Strand=Plus/Plus Query 1 AACTAAGATCTTGCCTTCACCATTTTTCTCTCTTCTCGATTATATCTCTAACCTCAAAGG 60 |||||||||||||| ||| ||| |||||||||||||| ||||| ||||| |||||||||| Sbjct 1 AACTAAGATCTTGCATTCGCCA-TTTTCTCTCTTCTCAATTATCTCTCT-ACCTCAAAGG 58 Query 61 --TACATTTAATAGCTAGATGTTATAACAAAATGGGGAGATCACCGTGTTGCGATGAGAG 118 || |||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 59 TATATATTTAATAACTAGATGTTATAACAAAATGGGGAGATCACCGTGTTGCGATGAGAG 118 Query 119 CGGATTAAAGAAAGGGCCATGGACGCCAGAAGAAGATCAGAAACTGATAAATCACATAAG 178 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 TGGATTAAAGAAAGGGCCATGGACGCCAGAAGAAGATCAGAAACTGATAAATCACATAAG 178 Query 179 AAAACACGGCCATGGAAGCTGGAGAGCTCTACCCAAGCAAGCCGGTTTAAACCGGTGTGG 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 AAAACACGGCCATGGAAGCTGGAGAGCTCTACCCAAGCAAGCCGGTTTAAACCGGTGTGG 238 Query 239 GAAGAGTTGCAGATTGAGATGGACTAATTACTTGAGACCAGATATCAAAAGAGGAAACTT 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 GAAGAGTTGCAGATTGAGATGGACTAATTACTTGAGACCAGATATCAAAAGAGGAAACTT 298 Query 299 CACAGCTGAGGAAGAACAAACTATCATTAACCTTCATTCTCTTCTTGGGAACAAGTGGTC 358 ||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 299 CACAGCTGAGGAAGAGCAAACCATCATCAACCTTCATTCTCTTCTTGGGAACAAGTGGTC 358 Query 359 GTCTATAGCTGGTCATCTCCCAGGAAGAACGGATAACGAAATAAAGAACTATTGGAACAC 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 GTCTATAGCTGGTCATCTCCCAGGAAGAACGGATAACGAAATAAAGAACTATTGGAACAC 418 Query 419 GCATATTAGAAAGAAACTTATTCAGATGGGAATCGATCCGGTGACCCATAGGCCAAGAAC 478 |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 419 GCATATTAGAAAGAAACTTATTCAGATGGGGATCGATCCCGTGACCCATAGGCCAAGAAC 478 Query 479 CGACCATCTAAACGTTCTAGCCGCTCTCCCGCAACTACTAGCTGCCGCAAATTTCAACAA 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 CGACCATCTAAACGTTCTAGCCGCTCTCCCGCAACTACTAGCTGCCGCAAATTTCAACAA 538 Query 539 CCTCTTGAATCTAAATCAAAATATACAA-TTGGATGCAACAAGTGTTGCGAAAGCCCAAC 597 |||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||| Sbjct 539 CCTCTTGAATCTAAATCAAAATATACAACTTG-ATGCAACAAGTGTTGCAAAAGCCCAAT 597 Query 598 TGTTACATAGTATGATTCAAGTCCTTAGCAACAACAATACCTCTTCTTCCTTTGACATTC 657 |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| Sbjct 598 TGTTACATAGTATGATTCAAGTCCTTAGCAGCAACAATACCTCTTCTTCTTTTGACATTC 657 Query 658 ATCACAC-AACCAATAATCTCTTTGGCCAATCTTCTTTCTTAGAGAACCTACCAAATATT 716 ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 ATCACACCAAC-AATAATCTCTTTGGCCAATCTTCTTTCTTAGAGAACCTACCAAATATT 716 Query 717 -G--AAAATCCTTATGATCAAACCCAAGGCCTCTCTCACATTGACGATCAGCCTCTGGAT 773 | ||||||||||||||||||||||| ||||||||||||| ||| ||||| |||||||| Sbjct 717 AGTGAAAATCCTTATGATCAAACCCAAAGCCTCTCTCACATCGACAATCAGTCTCTGGAT 776 Query 774 TCGTTTTCTAGCCCGATTCGAGTAGTTGCTTATCAACATGATCAGAATTTTATTCCGCCC 833 ||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||| Sbjct 777 CCGTTTTCTAGCCCGATTCGAGTAGTTGCTCATCAACTTGATCAGAATTTGATTCCGCCC 836 Query 834 TTGATTTCGACATCTCCTGATGAGTCTAAGGAAACCCAAATGATGGTCAAGAACAAGGAA 893 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 837 TTGATTTCGGCATCCCCTGATGAGTCTAAGGAAACCCAAATGATGGTCAAGAACAAGGAA 896 Query 894 ATCATGAAGTATAATGATCATACTTCAAACCCTTCGTCGACCTCAACTTTTACACAAGAT 953 ||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 897 ATCATGAAGCATAATGATCATACTTCAAACCCTTCGTCGACCTCAACGTTCACACAAGAT 956 Query 954 CACCAGCCATGGTGTGACATAATTGATGATGAAGCAAGTGATTCTTATTGGAAAGAGATC 1013 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 957 CATCAGCCATGGTGTGACATAATTGATGATGAAGCAAGTGATTCTTATTGGAAAGAGATC 1016 Query 1014 ATAGAGCAAACTTGTTCGGAGCCTTGGCCATTTCGTGAATAGAGATGAAAGTAAAACATT 1073 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1017 ATAGAGCAAACTTGTTCGGAGCCTTGGCCATTTCGTGAATAGAGATGAAAGAAAAACATT 1076 Query 1074 AGTCTTAtttttttCTGTGGATATA--------GATATATACATATACGTTGTTAATTAA 1125 ||||||||||||| ||||||||||| |||||||||||||| |||||||||||| Sbjct 1077 AGTCTTATTTTTT-CTGTGGATATACTTATATAGATATATACATATATGTTGTTAATTAA 1135 Query 1126 CTTTCATACAATTTGTGTCTTAATTATTTTCCAACCATGTATACAAA-CACATTGAT-A- 1182 |||||||||| ||||||||||||||||||| | ||||| |||||||| ||||||||| | Sbjct 1136 CTTTCATACAGTTTGTGTCTTAATTATTTTTCGACCATATATACAAAACACATTGATCAT 1195 Query 1183 -CTGTACAAAACTGATTATCAT 1203 ||||||||||||||||||||| Sbjct 1196 ACTGTACAAAACTGATTATCAT 1217 > Ahg488535 jgi|Araly1|488535|fgenesh2_kg.6__1669__AT5G16770.1 Length=1248 Score = 599 bits (324), Expect = 2e-170 Identities = 533/632 (84%), Gaps = 21/632 (3%) Strand=Plus/Plus Query 89 AATGGGGAGATCACCGTGTTGCGATGAGAGCGGAT-TAAAGAAAGGGCCATGGACGCCAG 147 ||||||| | ||||| ||||||||||||| || | ||||||||||||||||||| | || Sbjct 63 AATGGGGCGTTCACCATGTTGCGATGAGAATGG-TCTAAAGAAAGGGCCATGGACACAAG 121 Query 148 AAGAAGATCAGAAACTGATAAATCACA-TAAGAAAACACGGCCATGGAAGCTGGAGAGCT 206 | || ||| |||||||||| |||||| | | || ||| |||||||| |||||||||||| Sbjct 122 AGGAGGATGAGAAACTGATTGATCACATTCA-AACACATGGCCATGGCAGCTGGAGAGCT 180 Query 207 CTACCCAAGCAAGCCGGTTTAAACCGGTGTGGGAAGAGTTGCAGATTGAGATGGACTAAT 266 || || |||||||||||||||||||| || || |||||||| ||||||||||||||||| Sbjct 181 CTTCCGAAGCAAGCCGGTTTAAACCGATGCGGAAAGAGTTGTAGATTGAGATGGACTAAC 240 Query 267 TACTTGAGACCAGATATCAAAAGAGGAAACTTCACAGCTGAGGAAGAACAAACTATCATT 326 ||||||||||| || ||||| |||||||| ||||| | |||||||||||||| || || Sbjct 241 TACTTGAGACCTGACATCAAGAGAGGAAATTTCACTGAAGAGGAAGAACAAACAATTATC 300 Query 327 AACCTTCATTCTCTTCTTGGGAACAAGTGGTCGTCTATAGCTGGTCATCTCCCAGGAAGA 386 ||||| ||||| |||||||| |||||||||||||| ||||| ||| |||| || |||||| Sbjct 301 AACCTCCATTCCCTTCTTGGAAACAAGTGGTCGTCGATAGCCGGTAATCTTCCTGGAAGA 360 Query 387 ACGGATAACGAAATAAAGAACTATTGGAACACGCATATT-AGAAAGAAACTTATTCAGAT 445 ||||| || |||||||| |||||||||||||| ||| || |||||||||||| | || || Sbjct 361 ACGGACAATGAAATAAAAAACTATTGGAACACACAT-TTGAGAAAGAAACTTCTCCAAAT 419 Query 446 GGGAATCGATCCGGTGACCCATAGGCCAAGAACCGACCATCTAAACGTTCTAGCCGCTCT 505 ||| || |||||||||||||||||||||||||||||||||||||||||| |||| ||||| Sbjct 420 GGGGATTGATCCGGTGACCCATAGGCCAAGAACCGACCATCTAAACGTTTTAGCTGCTCT 479 Query 506 CCCGCAACT-ACTAGCTGCCGCAAATTTCAACAACCTCTTGAATCTAAATCAAAATATAC 564 |||||| || | |||| |||||||||||||||| |||||||||||| |||||||| | | Sbjct 480 CCCGCAGCTTA-TAGCCGCCGCAAATTTCAACAGCCTCTTGAATCTCAATCAAAACGTGC 538 Query 565 AATTGGATGCAACAAGTGTTGCGAAAGCCCAACTGTTACATAGTATGATTCAAGTCCTTA 624 || |||||||||||| | |||| ||||| ||||| ||||| | |||||||||||||||| Sbjct 539 AAGTGGATGCAACAACTCTTGCTAAAGCTCAACTTTTACACACTATGATTCAAGTCCTTG 598 Query 625 GCAACAA---CAATACCTCTTCTTCCTTTGACATTCATCA-C-A--CAAC-CAATA--A- 673 ||| ||| ||| ||| | |||| ||| | ||||||| | | ||| || || | Sbjct 599 GCACCAATAACAACACCAATCCTTCTTTTT-C-TTCATCAACTATGCAAAACAGTAGCAA 656 Query 674 TCTCTTTGGCCAATCTTCTTTCTTAGAGAACC 705 |||||||||||||||||||| ||||||||||| Sbjct 657 TCTCTTTGGCCAATCTTCTTACTTAGAGAACC 688 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45976237902 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5