BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02950.1
Length=1135
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927788 jgi|Araly1|927788|scaffold_300245.1 1234 0.0
> Ahg927788 jgi|Araly1|927788|scaffold_300245.1
Length=751
Score = 1234 bits (668), Expect = 0.0
Identities = 721/747 (97%), Gaps = 1/747 (0%)
Strand=Plus/Plus
Query 131 GAGGTTTTTAAGTAAGTTGAGATGTCAGTTAAAGCAAGGAGAATTTCTGGTAGATTAGAG 190
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 GAGG-TTTTAAGTAAGTTGAGATGTCAGTTAAAGCAAGGAGGATTTCTGGTAGATTAGAG 59
Query 191 ACTGTAGTAACTAAGGTTAATTATGCATTTGATCCTGTTGACGATGACAAAATCATAAGA 250
||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 60 ACTGTAGTAACTAAGGTTAATTATGCATTTGATCCGGTGGACGATGACAAGATCATAAGA 119
Query 251 AACCGGCTTCTAACCCGAACCACGACCACTCGAGGCGAGCCTCCATTGAAGAAACTTCAG 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AACCGGCTTCTAACCCGAACCACGACCACTCGAGGCGAGCCTCCATTGAAGAAACTTCAG 179
Query 311 AAGAAGTTCACTTCTTTTGTACTCGAGGTGGATAAAGAAGAAGAGAACTATAACGACTGC 370
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 180 AAGAAGTTCACTTCTTTTGTACTCGAAGTGGATAAAGAAGAAGAGAACTATAACGACTGC 239
Query 371 GGTAGACTTGCCAAAGCTTTTTTACAGGAACTGTCAACTTTCGAGATTCCGCTTCTGAAG 430
||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 240 GGTAGACTTGCAAAAGCTTTCTTACAGGAACTTTCAACTTTCGAGATCCCGCTTCTGAAG 299
Query 431 AGCCAAGCGGTTGTGGAAGCAAACCTTAGGGAGAAAGAGAGCTTTAATGAGGTGAAAGAT 490
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 300 AGCCAAGCGGTTGTGGAAGCAAATCTTAGGGAGAAAGAGAGCTTTAACGAGGTGAAAGAT 359
Query 491 GAGACGGAAAGGCAGATAATGCAGGCGAAAGCTGAGATTGAAGATCTAAAGAAGCAGCTT 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAGACGGAAAGGCAGATAATGCAGGCGAAAGCTGAGATTGAAGATCTAAAGAAGCAGCTT 419
Query 551 GAGGAGAGTAAAATAGATAGACAGCATAAAGAAGAGTGTGAGACGATAAGGAAACTGATT 610
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 420 GAGGAGAGTAAAATAGACAGACAGCATAAAGAGGAGTGTGAGACGATAAGGAAACTGATT 479
Query 611 TCTGCGCAACCGCCAAGGTCAGAGACAGAGAAGGTTATATATGAATTGAACAAGGAGATT 670
||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 480 TCTGCTCAACCGCCGAGGTCAGAGACAGAGAAGGTCATATATGAATTGAACAAGGAGATT 539
Query 671 GCTGAGCTTGAAGCAGAGAGCACTGCAAGTTGGAGATTGCTTGAGCTAAGGAAGAAGCAG 730
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 540 GCTGAGCTTGAAGCAGAGAGCACTGCAAGCTGGAGATTGCTTGAGCTAAGGAAGAAGCAG 599
Query 731 TTTGCTCTCCTGATGCATGTGGTGGATGAGTTGCAGAACACAATGGAAGATGAGCAGAAG 790
|||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 600 TTTGCTCTGTTGTTGCATGTGGTAGATGAGTTGCAGAACACAATGGAAGATGAGCAGAAG 659
Query 791 AGTTTGGTGGACGAGATTCGGTCAGCGTCGGAAGATCAGAGGAACATAACCGACGCTATG 850
||||||||||||||||||||| |||||| |||||||||||||||||||||||| || |||
Sbjct 660 AGTTTGGTGGACGAGATTCGGACAGCGTTGGAAGATCAGAGGAACATAACCGAGGCCATG 719
Query 851 TCTGTTGATTAAGTCCAAATCTCGATA 877
|||||||||||||||||||||||||||
Sbjct 720 TCTGTTGATTAAGTCCAAATCTCGATA 746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42316437870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5