BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02960.1
Length=741
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477542 jgi|Araly1|477542|fgenesh2_kg.3__243__AT3G02960.1 1164 0.0
Ahg497416 jgi|Araly1|497416|fgenesh2_kg.386__2__AT5G63530.2 69.4 3e-11
Ahg496541 jgi|Araly1|496541|fgenesh2_kg.8__2357__AT5G63530.2 69.4 3e-11
> Ahg477542 jgi|Araly1|477542|fgenesh2_kg.3__243__AT3G02960.1
Length=741
Score = 1164 bits (630), Expect = 0.0
Identities = 707/744 (95%), Gaps = 6/744 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAAGAACAAGCAAAATGGAGAATCAGACAACAAGTCTGAAAAGAAGAACCAGAAA 60
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1 ATGGGAAAGAACAAGCAAAATGGAGAATCAGATAACAAGTCAGAAAAGAAGAACCAGAAA 60
Query 61 AATGGAGATTCATCAGTCGATAAGTCTGATAAGAAAAATCAATGTAAAGAAATTGTTCTG 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 AATGGAGATTCATCAGTCGATAAGTCTGATAAGAAAAATCAATGTAAACAAATTGTTCTG 120
Query 121 AAGGTTTACATGCACTGTGAAGGATGTGCATCACAAGTTTCTCATTGCTTGAGGGGCTAT 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGGTTTACATGCACTGTGAAGGATGTGCATCACAAGTTTCTCATTGCTTGAGGGGCTAC 180
Query 181 GATGGGGTTGAGCATATTAAGACAGAGATAGGAGACAATAAAGTTGTTGTGTCTGGAAAA 240
|||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 181 GATGGGGTTGAGCAAATTAAGACAGAGATCGGAGACAATAAAGTGGTTGTGTCTGGAAAA 240
Query 241 TTTGATGATCCGTTGAAGATATTACGAAGAGTGCAAAAGAAATTTAGTAGAAATGCTGAG 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 241 TTTGATGATCCGTTGAAGATATTACGAAGAGTGCAAAAGAAATTTAGTAAAAATGCTGAG 300
Query 301 ATGATTTCCCCAAAACATAACCCTAAACAAGATCA---GAAGGAGCCACAGCAAAAGAAA 357
||||||||||||||| |||||| ||||||||||| |||||||||||| |||||||||
Sbjct 301 TTGATTTCCCCAAAACCTAACCCCAAACAAGATCATCAGAAGGAGCCACAACAAAAGAAA 360
Query 358 GAAAGTGCTCCCGAGATCAAAACTGCAATTTTAAGAATGAACATGCACTGTGAAGGATGT 417
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 361 GAAAGTGCTCCCCAGATCAAAACTGCAATTTTAAAAATGAACATGCACTGTGAAGGATGT 420
Query 418 GTTCATGAAATCAAAAGAGGCATTGAAAAAATAAAAGGCATTCAATCGGTGGAACCAGAC 477
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 421 GTTCATGAAATCAAAAGAGGCATTGAGAAAATAAAAGGTATTCAATCGGTGGAACCAGAC 480
Query 478 CGGTCAAAGTCAACGGTAGTGGTACGAGGAGTCATGGATCCTCCAAAACTTGTGGAGAAA 537
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CGGTCAAAGTCAACAGTAGTGGTACGAGGAGTCATGGATCCTCCAAAACTTGTGGAGAAA 540
Query 538 ATCAAGAAAAAACTTGGGAAACATGCAGAGCTTCTAAGTCAAATTACAGAGAAAGGCAAA 597
||||||||||| ||||||||||| ||||||||||||||||||| | |||||||||||||
Sbjct 541 ATCAAGAAAAAGCTTGGGAAACACGCAGAGCTTCTAAGTCAAACCAGAGAGAAAGGCAAA 600
Query 598 GACAATAATAAGAAGAACAATAATAAGAAGGAAGAAAGTGATGGAAACAAAATCTTTAGT 657
||||||||||| || || | ||||||| ||||| ||||||||||||||||||||||||
Sbjct 601 GACAATAATAATAATAA---TCATAAGAATGAAGACAGTGATGGAAACAAAATCTTTAGT 657
Query 658 TACCCTCCTCAGTATTCATCTCAACATGCTTATCCCTCTCAGATTTTTAGCGACGAAAAT 717
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 658 TACCCTCCTCAGTATTCATCCCAACATGCTTATCCCTCTCAGATCTTTAGCGACGAAAAT 717
Query 718 GTACATTCTTGTTCAATCATGTGA 741
|||||||| ||||| |||||||||
Sbjct 718 GTACATTCCTGTTCGATCATGTGA 741
> Ahg497416 jgi|Araly1|497416|fgenesh2_kg.386__2__AT5G63530.2
Length=1175
Score = 69.4 bits (37), Expect = 3e-11
Identities = 41/43 (95%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 107 AAGAAATTGTTCTGAAGGTTTACATGCACTGTGAAGGATGTGC 149
|||| |||||||| |||||||||||||||||||||||||||||
Sbjct 236 AAGAGATTGTTCTTAAGGTTTACATGCACTGTGAAGGATGTGC 278
> Ahg496541 jgi|Araly1|496541|fgenesh2_kg.8__2357__AT5G63530.2
Length=1175
Score = 69.4 bits (37), Expect = 3e-11
Identities = 41/43 (95%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 107 AAGAAATTGTTCTGAAGGTTTACATGCACTGTGAAGGATGTGC 149
|||| |||||||| |||||||||||||||||||||||||||||
Sbjct 236 AAGAGATTGTTCTTAAGGTTTACATGCACTGTGAAGGATGTGC 278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27296008572
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5