BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02970.1
Length=1159
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477543 jgi|Araly1|477543|fgenesh2_kg.3__244__AT3G02970.1 1655 0.0
> Ahg477543 jgi|Araly1|477543|fgenesh2_kg.3__244__AT3G02970.1
Length=1110
Score = 1655 bits (896), Expect = 0.0
Identities = 1056/1130 (93%), Gaps = 24/1130 (2%)
Strand=Plus/Plus
Query 1 ATCAAAGGCCAAAAGAACAGAAAAAAGtttttttCACGCGGTGGCAATGGCAATGGCGTC 60
||||||||||||||||||||||||||| ||| ||||||| || |||||||||||
Sbjct 1 ATCAAAGGCCAAAAGAACAGAAAAAAG-TTTCTTCACGC---GG---TGGCAATGGCG-- 51
Query 61 TGCTTCTTCCTCCTCCTCCTCCATATCCGTCATCATTTTCCTCCTCTTGGCGCCTCTCTG 120
| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 52 T-CTTCTTCCTCCTCCTCCT---TATCCGTCACCATTTTCCTCCTCTTGGCGCCTCTCTG 107
Query 121 CCTTTCACGTGAGCCACCTTCACAAATCCCAAACGGAACCCTAGATCTCTCTTTACTATG 180
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 108 CCTTTCACGTGAGTCACCTTCGCAAATCCCAAACGGAACCCTAGATCTCTCTTTACTATG 167
Query 181 GTACGGCCAATTCACGCCTACTCAAAAGGAGAGGGTTCACGATTTCATAGAATCGCTTAA 240
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 168 GTACGGCCAATTCACGCCTATTCAAAAGGAGAGGGTTCAAGATTTCATAGAATCGCTTAA 227
Query 241 CTTCGACGCCAAGGAAGGTCTTGACCCGAAGGTATCGGCGTGGTGGAAAGTGGTGGAGAG 300
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 228 CTTCGACGCCAAGGAAGGTCTTGACCCAAAGGTATCGGCCTGGTGGAAAGTGGTGGAGAG 287
Query 301 TTACCAAGAGAGGTTTGAGGTGAAGGATATTTACCGACAGAAGAAGAGTAACAGAACCGT 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 TTACCAAGAGAGGTTCGAGGTGAAGGATATTTACCGACAGAAGAAGAGTAACAGAACCGT 347
Query 361 AGCTCCGAGGATTAAGGTGAAGGTTGTCCGGAGTTATGTGGATGAGAAGATGAAGTATGG 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 348 AGCTCCGAGGATTAAGGTCAAGGTTGTCCGGAGTTATGTGGATGAGAAGATGAAGTATGG 407
Query 421 AAAGGAATTGACAATGGGGAACGGTGAGAAACTTGTTGAGACGGCTATCGGAAATATGTC 480
||||||||||||||| || || | ||||||||||||||||||||| ||||||||||||||
Sbjct 408 AAAGGAATTGACAATCGGAAATGCTGAGAAACTTGTTGAGACGGCCATCGGAAATATGTC 467
Query 481 GAAAGTGGTTCCCGTGGTATTACTTTCGGCGCAAGTTAGGGCTCA-TGGCGTAGGGTTTT 539
||||||||| ||||| ||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 468 GAAAGTGGTGCCCGTTGTATTACTTTCGGCGCAAGTTAGGGCT-ATTGGCGTAGGGTTTT 526
Query 540 GTGACGGAACTTGCCAACATAACGCCCTAGCCAAAATTAAAGGTCAAAAAGAACCACGAC 599
|| ||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct 527 GTAACGGAACTTGCCAACATAACGCCCTTGCCAAAATTAAAGGTCAAAATGAACCGCGAC 586
Query 600 GGTACATAATGGTAAGCAACCCGGAGG-TGGAATGTCCCGGAGAGTGCGCTTGGCCTTTC 658
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 587 CGTACATAATGGTAAGCAACCCGGAGGAT-GAATGTCCCGGAGAGTGCGCTTGGCCTTTC 645
Query 659 CACACGGCCGATAAGGGTCCACGTGGCATGACCTATCAACCGGCAAGTGGAGAAGTCGGA 718
||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||| |||
Sbjct 646 CACACGGCCGACAAGGGTCCACGTGGCATGACCTATCAACCGCCAAGTGGCGAAGTTGGA 705
Query 719 GCTGACGCACTGGTTATTCAGCTAGCCACCGGTTTAGCCGATTTGGCCACCAATCCAGA- 777
|| |||||| |||||||||||||||||||||||||||||||| | |||||||||||| |
Sbjct 706 GCCGACGCATTGGTTATTCAGCTAGCCACCGGTTTAGCCGATCTCGCCACCAATCCA-AC 764
Query 778 TCTAACCAAGTCCTTATTCAAATCTGAGACGACACCGTACAACGATGACGTAAAGAAAAA 837
||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 765 TCTAACCGAGTTCTTATTCAAATCTGAGACGACACCGTACAACGATGACGGAAAGAGAAA 824
Query 838 CCATGAATCTTCGTCAATGTATATTGTGGACCCTGCAACCAAGTGCACTCGGGTTTTTGG 897
||||| | ||| || || ||||| | ||||||||||||||| |||||||||||||||||
Sbjct 825 CCATG--T-TTCTTCCATCTATATCGCGGACCCTGCAACCAAATGCACTCGGGTTTTTGG 881
Query 898 ATCCGGAGCTTTTCCAGGTTTCACTGGTAGAATTCGGGTTGACCCGATTACTGGTGGAGC 957
|||||||||||| ||||||||||| ||||||||||||||||||||| | |||||||||||
Sbjct 882 ATCCGGAGCTTTCCCAGGTTTCACCGGTAGAATTCGGGTTGACCCGGTAACTGGTGGAGC 941
Query 958 CTTTAATTCACACGGAATCAACCACTTGAAATTCTTGATTCCTTCTATTTGGGACCCTAA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 CTTTAATTCACACGGAATCAACCACTTGAAATTCTTGATTCCTTCTATTTGGGACCCTAA 1001
Query 1018 GACCAAATCTTGCTGGACTCCTATGTAAACCGTTATTATTACGACAT-GTTACACAGTTT 1076
||||||||||||||||||||||||||||||||||| |||||| | || ||||||||||||
Sbjct 1002 GACCAAATCTTGCTGGACTCCTATGTAAACCGTTACTATTAC-ATATTGTTACACAGTTT 1060
Query 1077 TTACCCTTCATGAACTTTTAAGGTTGTTTTGTTATTGGAAATATTCAATA 1126
|||||||| |||||||||||||||| | |||||||||||| |||||||||
Sbjct 1061 TTACCCTTTATGAACTTTTAAGGTTATCTTGTTATTGGAAGTATTCAATA 1110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43231387878
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5