BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G02980.1
Length=744
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477544 jgi|Araly1|477544|fgenesh2_kg.3__245__AT3G02980.1 577 5e-164
Ahg350793 jgi|Araly1|350793|fgenesh1_pg.C_scaffold_6001386 503 8e-142
> Ahg477544 jgi|Araly1|477544|fgenesh2_kg.3__245__AT3G02980.1
Length=728
Score = 577 bits (312), Expect = 5e-164
Identities = 420/470 (89%), Gaps = 15/470 (3%)
Strand=Plus/Plus
Query 23 TCATAGATGATTCATCAATGGAAGATGCAGGAATCTCTCT-TTGCCCAAGTATTCACTAT 81
|||||||||||||||||||||| ||| || |||||||||| || |||||||||| ||||
Sbjct 1 TCATAGATGATTCATCAATGGAGGATCCACGAATCTCTCTCTT-CCCAAGTATTTACTAC 59
Query 82 AGACCTATAAACCCTAATGATCTAGATCGTTTGGAGCAAATCCATCGCGATATCTTCCCC 141
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 60 AGACCTATAAAACCTAATGATCTAGATCGTTTGGAGCAAATCCATCGCGACATCTTCCCC 119
Query 142 ATCAAGTATGAGTCTGAGTTTTTCCAGAGTGTTGTGAACGGAGTTGATATCGTCTCATGG 201
||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||
Sbjct 120 ATCAAGTATGAGTCTGAGTTTTTTCAGTGTGTTGTGAACGGAGTTGATATCATCTCATGG 179
Query 202 GCTGCTGTTGATCGGAGCCGGCCTGATGATCACTCTGATGAACTTATTGGTTTTGTTACT 261
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 180 GCTGCTGTTGATCGGAGCCGGCCTGATCATCACTGTGATGAACTTATTGGTTTTGTTACA 239
Query 262 GCCAAATTTGTGCTTGCCAAAGATAGCGAGATAGATGATCTTATACATTACGATTCCTCG 321
|| | || | |||| | | | ||||||||||||||| ||||||||||||||
Sbjct 240 GCGAG-TTCATA-TTGCTTATGGTTTTT-GATAGATGATCTTATTCATTACGATTCCTCA 296
Query 322 AAAGGAGAGGAGACTTTGATATACATCTTGACACTCGGAGTTGTAGAAACATACAGAAAC 381
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 297 AAAGGAGAGGAGACTTTGATCTACATCTTGACACTCGGAGTTGTGGAAACATACAGAAAC 356
Query 382 CGTGGAATCGCAATGTCACTTATTAGTGAGGTAATTAAATATGCTTCCGGTTTATCTGTG 441
| | ||||||||||||||||||||| ||||| |||||||| |||||||| |||
Sbjct 357 C-------C--AATGTCACTTATTAGTGAGGTGATTAATTATGCTTCTGGTTTATCGGTG 407
Query 442 TGTC-GCGGAGTTTACCTTCATGTGATTGCACACAACAATGCTGCGATCT 490
|||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 TGTCAGAGGAGTTTACCTTCATGTGATTGCACACAACAATGCTGCGATCT 457
Score = 326 bits (176), Expect = 2e-88
Identities = 203/216 (94%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 528 ATTACATGGATTTTATCTAATCAATCGACATCATTTTGATGCGTTCTTGTTTGTCTACTT 587
|||||| ||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 458 ATTACACGGATTCTATCTAATCAAACGACAGCATTTTGACGCGTTCTTGTTTGTCTACTT 517
Query 588 CATCAACGGTTCTCGAACTCCTTGCTCACCCTTAGAGGTGGCGATGTTTGTTGTGAATTA 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 CATCAACGGTTCTCGAACTCCTTGCTCACCCTTAGAGGTGGCGATGTTTGTTGTGAATTA 577
Query 648 TATGAAGAGTGGTATCAAGTCAGTGGCATCTAAGCTGGCT-AACAAGGATGAGAAAGGTT 706
|||||||||||| ||||||| ||||||||||||||||| | |||| ||| ||||||||||
Sbjct 578 TATGAAGAGTGGCATCAAGTTAGTGGCATCTAAGCTGG-TGAACAGGGAGGAGAAAGGTT 636
Query 707 TGAAATGGCTGTTTTGCAAAGACACGGATTGTGTCT 742
||||||||||| ||||||||||||||||||| ||||
Sbjct 637 TGAAATGGCTGATTTGCAAAGACACGGATTGCGTCT 672
> Ahg350793 jgi|Araly1|350793|fgenesh1_pg.C_scaffold_6001386
Length=864
Score = 503 bits (272), Expect = 8e-142
Identities = 514/630 (82%), Gaps = 20/630 (3%)
Strand=Plus/Plus
Query 1 ATGTCGCGATTTCCTCGAAGATTCATAGATG-ATTCATCAATGGAAG-ATGCAGGAATCT 58
||||| || ||||| || ||||| | || | ||||||||||||| | | || ||||
Sbjct 1 ATGTCTCGTTTTCCCCGTGGATTCGTGGA-GAATTCATCAATGGAGGAACCCA-AAATCG 58
Query 59 CTCTTTGCCCAAGTATTC-ACTAT-AGACCTATAAACCCTAATGATCTAGATCGTTTGGA 116
||| | | |||| || || || | | || ||||||||| |||| |||| ||||||||
Sbjct 59 CTCGTCGTCCAACTA-TCTGCT-TCCGGCCAATAAACCCTTCTGATTTAGAACGTTTGGA 116
Query 117 GCAAATCCATCGCGATATCTTCCCCATCAAGTATGAGTCTGAGTTTTTCCAGAGTGTTGT 176
||||||||||||||| || ||||| || | |||||||||||||||||| |||| ||||||
Sbjct 117 GCAAATCCATCGCGACATATTCCCAATTAGGTATGAGTCTGAGTTTTTTCAGAATGTTGT 176
Query 177 GAACGGAGTTGATATCGTCTCATGGGCTGCTGTTGATCGGAGCCGGCCTGATGATCACTC 236
||||||| |||||||||||| ||||||||| |||||||||| || ||||||| ||| ||
Sbjct 177 CAACGGAGGTGATATCGTCTCTTGGGCTGCTATTGATCGGAGTCGCCCTGATGGTCATTC 236
Query 237 TGATGAACTTATTGGTTTTGTTACTGCCAAATTTGTGCTTGCCAAAGATAGCGAGATA-G 295
||| ||||||||||| ||||||||||||||| | |||||||||||||| ||||| |||
Sbjct 237 TGAGGAACTTATTGGATTTGTTACTGCCAAAATCGTGCTTGCCAAAGAAAGCGAAATATC 296
Query 296 ATGATCTTAT-ACATTACGATTCCTCGAAAGGAGAGGAGACTTTGATATACATCTTGACA 354
| ||||| || | | || || || ||||| ||||||||||| ||| | |||||| | |||
Sbjct 297 A-GATCTAATAAGA-TATGACTCGTCGAAGGGAGAGGAGACATTGGTGTACATCCTAACA 354
Query 355 CTCGGAGTTGTAGAAACATACAGAAACCGTGGAATCGC-AATGTCACTTATTAGTGAGGT 413
|| ||||||||||||||||||||||| |||||||| || || ||| ||||||| ||||||
Sbjct 355 CTTGGAGTTGTAGAAACATACAGAAAACGTGGAATAGCTAA-GTCGCTTATTAATGAGGT 413
Query 414 AATTAAATATGCTTCCGGTTTATCTGTGTGTCGCGGAGTTTACCTTCATGTGATTGCACA 473
| ||||| |||| ||| | ||||||| || || |||||||||||||||||||||||
Sbjct 414 CGTGAAATACACTTCTGGTATCCCTGTGTGCCGTGGTGTTTACCTTCATGTGATTGCACA 473
Query 474 CAACAATGCTGCGATCTGTTTGTACAAAAGATTGATGTT-CAGATGCGTGCGGAGATTAC 532
||||||| | || ||| | |||||||||||| || | || |||||| || |||| ||||
Sbjct 474 CAACAATCCCGCAATCCGGTTGTACAAAAGAATG-TCTTTCAGATGTGTAAGGAGGTTAC 532
Query 533 ATGGATTTTATCT-AATCAATCG-ACATCATTTTGATGCGTTCTTGTTTGTCTACTTCAT 590
| ||||| || || |||||| || ||| ||||| ||| | | |||||| |||||||| ||
Sbjct 533 ACGGATTCTA-CTTAATCAA-CGGACAGCATTTCGATTCCTACTTGTTCGTCTACTTTAT 590
Query 591 CAACGGTTCTCGAACTCCTTGCTCACCCTT 620
|||||||||||| ||||||||||||||||
Sbjct 591 CAACGGTTCTCGCTCTCCTTGCTCACCCTT 620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27410377323
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5