BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03000.1
Length=845
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477546 jgi|Araly1|477546|fgenesh2_kg.3__247__AT3G03000.1 763 0.0
> Ahg477546 jgi|Araly1|477546|fgenesh2_kg.3__247__AT3G03000.1
Length=725
Score = 763 bits (413), Expect = 0.0
Identities = 454/474 (96%), Gaps = 2/474 (0%)
Strand=Plus/Plus
Query 43 CATTACCTGTCATCGTTGACTTGTCAAGAAGAAACAAATCAACTCT-AAAAAGAAAAATG 101
||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1 CATTACCTGTCGTCGTTGACTTGTCAAGAAGAAACAAATCAACTCTAAAAAAG-AAAATG 59
Query 102 TTGTTCATCGAAATCGAAGCTTGACAGTATTCAAAATCAGATTCGAGATGAGCTGCGACG 161
|| |||||||||||| ||||||||||||||| ||||||||||| ||||||||| ||||||
Sbjct 60 TTCTTCATCGAAATCAAAGCTTGACAGTATTTAAAATCAGATTTGAGATGAGCGGCGACG 119
Query 162 GAGGCAAACCGGCGCCGGCGAAACTAGGCGACGAACAACTAGCGGAGCTCCGGGAGATAT 221
||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
Sbjct 120 GAGATAAACCGGCGCCGGCGAAACTAGGCGACGAACAATTAGCGGAGCTTCGGGAGATTT 179
Query 222 TCCGATCATTTGACCAGAACAAGGATGGAAGTTTGACGGAGCTCGAGTTAGGCTCACTTC 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCCGATCATTTGACCAGAACAAGGATGGAAGTTTGACGGAGCTCGAGTTAGGCTCACTTC 239
Query 282 TAAGATCTCTCGGTCTAAAGCCGAGTCAAGACCAACTCGACACATTGATCCAGAAAGCAG 341
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 240 TAAGATCTCTCGGTCTAAAGCCGAGTCAAGACCAACTCGACACCTTGATCCAGAAAGCAG 299
Query 342 ATCGGAATAACAACGGACTGGTCGAGTTCTCCGAGTTCGTCGCCCTCGTCGAGCCAGATC 401
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 300 ATCGGAATAGCAACGGACTGGTCGAGTTCTCCGAGTTCGTCGCTCTCGTCGAGCCAGATC 359
Query 402 TGGTCAAGTGTCCTTACACGGATGATCAGCTTAAAGCCATCTTTAGAATGTTTGACCGCG 461
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 360 TGGTCAAGTGTCCTTACACGGATGATCAGCTTAAAGCCATCTTTAAAATGTTTGACCGAG 419
Query 462 ATGGAAACGGTTACATAACGGCGGCGGAGTTAGCCCATTCGATGGCGAAGCTAG 515
| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 420 ACGGAAACGGTTACATAACGGCGGCGGAGTTAGCTCATTCGATGGCGAAGCTAG 473
Score = 270 bits (146), Expect = 1e-71
Identities = 245/286 (86%), Gaps = 34/286 (12%)
Strand=Plus/Plus
Query 556 AGAAGCTGATCGAGACGGCGATGGTTGTATTGATTTCCAAGAGTTTGTTCAAGCGATTAC 615
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 472 AGAAGCTGATCGAGACGGCGATGGTTGTATCGATTTCCAAGAGTTTGTTCAGGCGATTAC 531
Query 616 TTCAGCTGCGTTTGATAATGCTTGGGGTTGAAGAAAGAAAGGTATATATATACATAGTTT 675
||||||||| ||||||||||||||||||||||||||||||| | |||||||| || |
Sbjct 532 TTCAGCTGCATTTGATAATGCTTGGGGTTGAAGAAAGAAAG-T-TATATATA--TA-T-- 584
Query 676 GAAATACTTGTGTTTTGtttttttGGCTTCATCCTCAAATCAAAGACA-TTTGGAAGTAT 734
| | || | ||| | | |||||| ||||||||||||||| |||||||||||
Sbjct 585 G---T--TT-T-TTT-G-------G-CTTCATTCTCAAATCAAAGACAATTTGGAAGTAT 628
Query 735 ATGTGTGTAGGTGCGATTCCATGGAAAATGT-GTGTTATTTATTGTTTCATATTATTCTT 793
| ||||||||||||||||||||||||||||| |||||||||| |||||||| |
Sbjct 629 AAGTGTGTAGGTGCGATTCCATGGAAAATGTTGTGTTATTTACTGTTTCAT-T------- 680
Query 794 TGATGAAATTTTGATAGCTTGAAGAGAAAGCTATCATTGTTGGTTT 839
||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 681 -GATGAAATTTTGATAGCTTGAAGAGAAAGTTATCATTGTTGGTTT 725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31260791940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5