BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G03010.1
Length=950
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477548 jgi|Araly1|477548|fgenesh2_kg.3__249__AT3G03010.1 1304 0.0
Ahg927795 jgi|Araly1|927795|scaffold_300252.1 453 1e-126
Ahg488549 jgi|Araly1|488549|fgenesh2_kg.6__1683__AT5G16870.1 424 8e-118
Ahg927794 jgi|Araly1|927794|scaffold_300251.1 267 1e-70
> Ahg477548 jgi|Araly1|477548|fgenesh2_kg.3__249__AT3G03010.1
Length=921
Score = 1304 bits (706), Expect = 0.0
Identities = 843/905 (93%), Gaps = 25/905 (3%)
Strand=Plus/Plus
Query 1 ATATTAAGGAGAGACCTATTCGTGTGGCC-AA-ACACCAGAATATCGCCAAAATCGTTGA 58
||||||||||||||| |||||||||| || || ||||||||||||||||||| |||||||
Sbjct 1 ATATTAAGGAGAGACATATTCGTGTGCCCAAACACACCAGAATATCGCCAAAGTCGTTGA 60
Query 59 AACTTGAACGAAGAAACAGAC---T-TGTCACA--GCTCAGCCGCCGGAAGA-CTT-TAA 110
|||||||| |||||||||||| | ||||||| ||||||||||||||| | ||| | |
Sbjct 61 AACTTGAAAGAAGAAACAGACTTGTCTGTCACACTGCTCAGCCGCCGGAACATCTTGT-A 119
Query 111 GGAGGTATGGATTTGGTGTGGTTATTAAGTGTTTTACTTGTTGGAGCTGCACTTGGATAT 170
||||| |||||||||||||||||| |||||||| ||||| |||||||||||||||||| |
Sbjct 120 GGAGG-ATGGATTTGGTGTGGTTAATAAGTGTTCTACTTCTTGGAGCTGCACTTGGATTT 178
Query 171 TACATCAGCACTTTACGACAAACCCGCCGAATCTTT-CTCTCCTCCAAATCTGTCGCCAT 229
|||||||||||||||||||||||||||| ||||||| | || ||||||||||||||||||
Sbjct 179 TACATCAGCACTTTACGACAAACCCGCCAAATCTTTGCCCT-CTCCAAATCTGTCGCCAT 237
Query 230 AGATGCAGGATCCAGCGGGAATAAGAAAACCAAGTCCAAGGAACCCCTCGAGATAGAGAA 289
| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 238 AAATGCAGGATCCAGCGGAAATAAGAAGACCAAGTCCAAGGAACCCCTCGAGATAGAGAA 297
Query 290 ACTCGCTGATTTTCGCAAAAATTTCAAAATGGTTTTGGTTGTGAGGAATGATCTTAAAAT 349
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 ACTCGCTGATCTTCGCAAAAATTTCAAAATGGTTTTGGTTGTGAGGAATGATCTTAAAAT 357
Query 350 GGGTAAAGGGAAGATTGCAGCTCAATGCAGTCATGCAACTTTAGGTTTATACAAGAAACT 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GGGTAAAGGGAAGATTGCAGCTCAATGCAGTCATGCAACTTTAGGTTTATACAAGAAACT 417
Query 410 CCTTCAACGGGCGCCAAAAGCCTTGAACAGATGGGAATATTGTGCTCAGCCAAAAGTTGT 469
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CCTTCAACGGGCGCCAAGAGCCTTGAACAGATGGGAATATTGTGCTCAGCCAAAAGTTGT 477
Query 470 TGTCAAAATTGAAAGTGAGGAAGAGATGCTAGTTTTGCAAGAAAGAGCAAAGACCCTGAA 529
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 478 TGTCAAAATCGAAAGTGAGGAAGAGATGCTAGTTTTGCAAGAAAGAGCAAAGACCCTTAA 537
Query 530 ACTGCCAACCCATATCACCATTGATGCGGGAAAAACACAGATCGCTCCAAATTCAAGGAC 589
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 538 ACTGCCAACCCATATCACCATTGATGCCGGAAAAACACAGATCGCTCCAAATTCAAGAAC 597
Query 590 AGTAATGGCTATTCTTGGACCTGTTGATAATGTTGATGAAGTAACAGGTGGACTAAAGCT 649
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 598 AGTAATGGCTATTCTTGGACCGGTTGATAATGTTGATGAAGTAACAGGTGGACTAAAGCT 657
Query 650 TATGTAATAACTCTTGGATTCGACATTACCAACACTCTGGCAGAAAGGA-GAGCATGCTA 708
|||||||||||||| |||||||||||||||| ||||||||||||| ||| ||| ||||||
Sbjct 658 TATGTAATAACTCTAGGATTCGACATTACCA-CACTCTGGCAGAA-GGAAGAGGATGCTA 715
Query 709 ATTGGCTCCCAAGTTTTCGACATTTCTCGGTGACAAATCTGTTTTCCCTTCTTCTGAGTA 768
||||||||| || ||||| |||||||||||||||||||||| | ||| ||||| |||||
Sbjct 716 ATTGGCTCCGAATTTTTCAACATTTCTCGGTGACAAATCTGCCTCCCCATCTTCGGAGTA 775
Query 769 GATAACTCCATTTTACATGGATTTGTACAATTGTCTTACTAGAAGATAATCATATGACAA 828
|||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 776 GATAACTCAATTTTGCATGGATTTGTACAATTGTCTTACTAGAAAATAATCATATGACAA 835
Query 829 CATTTGCTGATTATCC-ACAACATTTTAAAGATGAAG--T---TTT-GATGCTCTCCTTT 881
|||||||||||||||| | || ||||||||||||||| | ||| |||||| || |||
Sbjct 836 CATTTGCTGATTATCCCATAA-ATTTTAAAGATGAAGAGTCAGTTTTGATGCTTTCTTTT 894
Query 882 GTTTT 886
|||||
Sbjct 895 GTTTT 899
> Ahg927795 jgi|Araly1|927795|scaffold_300252.1
Length=427
Score = 453 bits (245), Expect = 1e-126
Identities = 297/320 (93%), Gaps = 12/320 (4%)
Strand=Plus/Plus
Query 260 CAAGTCCAAGGAACCCCTCGAGATAGAGAAACTCGCTGATTTTCGCAAAAATTTCAAAAT 319
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 44 CAAGTCCAAGGAACCCCTCGAGATAGAGAAACTCGCTGATCTTCGCAAAAATTTCAAAAT 103
Query 320 GGTTTTGGTTGTGAGGAATGATCTTAAAATGGGTAAAGGGAAGATTGCAGCTCAATGCAG 379
||||||||||||||||| ||||||||||||||||||||||||||||||||| | | ||
Sbjct 104 GGTTTTGGTTGTGAGGATTGATCTTAAAATGGGTAAAGGGAAGATTGCAGCGC--T-CA- 159
Query 380 TCATGCAACTTTAGGTTTATACAAGAAACTCCTTCAACGGGCGCCAAAAGCCTTGAACAG 439
||| | ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 160 --ATG---C---AGGTTTATACAAGAAACTCCTTCAACGGGCGCCAAGAGCCTTGAACAG 211
Query 440 ATGGGAATATTGTGCTCAGCCAAAAGTTGTTGTCAAAATTGAAAGTGAGGAAGAGATGCT 499
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 212 ATGGGAATATTGTGCTCAGGGAAAAGTTGTTGTCAAAATCGAAAGTGAGGAAGAGATGCT 271
Query 500 AGTTTTGCAAGAAAGAGCAAAGACCCTGAAACTGCCAACCCATATCACCATTGATGCGGG 559
|||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||| ||
Sbjct 272 AGTTTTGCAAGAAAGAGCAAAGTCCCTTAAACTGCCAACCCATATCACCATTGCTGCCGG 331
Query 560 AAAAACACAGATCGCTCCAA 579
||||||||||||||||||||
Sbjct 332 AAAAACACAGATCGCTCCAA 351
> Ahg488549 jgi|Araly1|488549|fgenesh2_kg.6__1683__AT5G16870.1
Length=732
Score = 424 bits (229), Expect = 8e-118
Identities = 346/402 (86%), Gaps = 10/402 (2%)
Strand=Plus/Plus
Query 255 AAAACCAA--GTCCAAGGAACCCCTCGAGATAGAGAAACTCGCTGATTTTCGCAAAAATT 312
|||||||| ||||||| || ||||| || ||||||||||||||| ||| | | |||
Sbjct 165 AAAACCAATCCTCCAAGGGTCCTCTCGAAATCGAGAAACTCGCTGATATTCTCGATGATT 224
Query 313 TCAAAATGGTTTTGGTTGTGAGGAATGATCTTAAAATGGGTAAAGGGAAGATTGCAGCTC 372
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 225 TCAAGATGGTTTTGGTTGTGAGGAATGATCTTAAAATGGGTAAAGGAAAGATTGCAGCTC 284
Query 373 AATGCAGTCATGCAACTTTAGGTTTATACAAGAAA-CTCCTTCAACGGGCGCCAAAAGCC 431
||||||||||||||||||||||||||||||| ||| || ||| || || ||||||||
Sbjct 285 AATGCAGTCATGCAACTTTAGGTTTATACAA-AAAGCTTGTTCGTCGAGCACCAAAAGCA 343
Query 432 TTGAACAGATGGGAATATTGTGCTCAGCCAAAAGTTGTTGTCAAAATTGAA-AGTGAGGA 490
||| || | ||||| | ||||| ||||||||||||||||||||||| || | |||||
Sbjct 344 TTGGACTGCTGGGAGGAATGTGCACAGCCAAAAGTTGTTGTCAAAATCGAGGAC-GAGGA 402
Query 491 AGAGATGCTAGTTTTGCAAGAAAGAGC-AAAGACCCTGAAACTGCCAACCCATATCACCA 549
|||||||||| |||||||||||||| ||| |||| |||||||| |||||||||||||
Sbjct 403 CGAGATGCTAGAATTGCAAGAAAGAGCTAAAT-CCCTTAAACTGCCTACCCATATCACCA 461
Query 550 TTGATGCGGGAAAAACACAGATCGCTCCAAATTCAAGGACAGTAATGGCTATTCTTGGAC 609
||||||| |||| ||| ||||| || |||||||||||||| || ||||||||||||||||
Sbjct 462 TTGATGCTGGAAGAACCCAGATTGCCCCAAATTCAAGGACGGTTATGGCTATTCTTGGAC 521
Query 610 CTGTTGATAAT-GTTGATGAAGTAACAGGTGGACTAAAGCTT 650
| || || | | ||||||||||||||||||||||||||||||
Sbjct 522 CAGTCGA-AGTTGTTGATGAAGTAACAGGTGGACTAAAGCTT 562
> Ahg927794 jgi|Araly1|927794|scaffold_300251.1
Length=2215
Score = 267 bits (144), Expect = 1e-70
Identities = 176/191 (92%), Gaps = 4/191 (2%)
Strand=Plus/Plus
Query 105 CTTTA-AGGAGGTATGGATTTGGTGTGGTTATTAAGTGTTTTACTTGTTGGAGCTGCACT 163
||||| |||||| |||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1137 CTTTATAGGAGG-ATGGATTTTGTGTGGTTATTAAGTGTTTTACTTCTTGGAGCTGCACG 1195
Query 164 TGGATATTACATCAGCACTTTACGACAAACCCGCCGAATCTTTCTCTCCTCCAAATCTGT 223
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1196 TGGATATTACATCAGCACTTTACGACAAACCCGGCGAATCTTTCTCTCCTCCAAATCTGT 1255
Query 224 CGCCAT-AGATGCAGGATCCAGCGGGAATAAGAAAACCAAGTCCAAGGAACCCCTCGAGA 282
| || | | |||||||||||||||| |||||||| | |||| ||||||||||||| ||||
Sbjct 1256 CACCGTTA-ATGCAGGATCCAGCGGAAATAAGAAGATCAAGGCCAAGGAACCCCTTGAGA 1314
Query 283 TAGAGAAACTC 293
|||||||||||
Sbjct 1315 TAGAGAAACTC 1325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35263698225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5